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The map label for this gene is rarD [H]

Identifier: 83310352

GI number: 83310352

Start: 1336519

End: 1337301

Strand: Reverse

Name: rarD [H]

Synonym: amb1253

Alternate gene names: 83310352

Gene position: 1337301-1336519 (Counterclockwise)

Preceding gene: 83310353

Following gene: 83310349

Centisome position: 26.92

GC content: 70.88

Gene sequence:

>783_bases
GTGCCGCCAACCGAGGTCCTGGCCTATCGGGTGATCTGGTCGCTGCTGACCGTCATGATCATGCTGACCTGGACGGGGCG
CTGGGGCGAGGTGCTGGTGCTGCTGGCCTCGGGCCGCCGGCTGGCCGTGCTGGCCGCCTCGACCGCCTGCATCAGCGTCA
ACTGGCTGGTCTTCATCCGCGTGGTGGGAGAAGGCAACGTGCTGGAAGCCAGCATGGGCTACTTTCTCAATCCCCTGGTC
AACGTCGCGCTGGGCGTGGTGGTGCTGGGCGAGCGGCTGCGGCCACTGCAATGGGTGGCGGTCGGCCTGGCCCTGGCCGG
CATCGTCGAGCTGGCAATCGGCACCGGCACGGCGCCCTGGGCCGCGCTGACCCTGGCCGGAACCTTCGGGGTCTACGGCC
TGCTGCGCAAGAAGCTGCCGGTGGCGCCGCTGACCGGCCTGGCGGTGGAGACGGGGCTGATGCTGCCCCTGGCCGTGGCC
TATCTGTCCTGGCGGGTCGCCGAGGGCGCGCCGCTGTTGGGGGGATCGCCGGAGCTGGGCGCCGCCCTGCTGGCCAGTGG
GCCGGTGACCGCCCTGCCGCTGCTATGGTTCGCCGCCGCCGCCAGCCGCCTGCGCTATGCCACCCTGGGTTTTTTCCAAT
ACCTGGCCCCCACCGGGCACTTCCTGCTGGCGGTCCTGGTTTATGGCGAGAGCCCCGGCCCGGCCCATCTGATCACCTTC
GGCTGCATCTGGGCGGCCATCGGGCTTTATCTGGCCGACAGCTGGCGCCACAGCCGGCGCTGA

Upstream 100 bases:

>100_bases
GTGAACCGTGAGCGCGGAGCACCGCCGGGGCGTGCTGTTCGCCCTGGCGTGCTACGGCACCTGGGGACTGTTTCCCGCCT
TCTGGAAGCTGCTGGCCAGC

Downstream 100 bases:

>100_bases
GGCGCCCACCAGGGGCTCACCTTCGGGGGCGTTTGCCCCCGATCCCCCAATCGGGAAGCCCGCTTCCCGAACCCTTCAGC
TTTTTAAAAAGCTGGTGGCT

Product: permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 259

Protein sequence:

>260_residues
MPPTEVLAYRVIWSLLTVMIMLTWTGRWGEVLVLLASGRRLAVLAASTACISVNWLVFIRVVGEGNVLEASMGYFLNPLV
NVALGVVVLGERLRPLQWVAVGLALAGIVELAIGTGTAPWAALTLAGTFGVYGLLRKKLPVAPLTGLAVETGLMLPLAVA
YLSWRVAEGAPLLGGSPELGAALLASGPVTALPLLWFAAAASRLRYATLGFFQYLAPTGHFLLAVLVYGESPGPAHLITF
GCIWAAIGLYLADSWRHSRR

Sequences:

>Translated_260_residues
MPPTEVLAYRVIWSLLTVMIMLTWTGRWGEVLVLLASGRRLAVLAASTACISVNWLVFIRVVGEGNVLEASMGYFLNPLV
NVALGVVVLGERLRPLQWVAVGLALAGIVELAIGTGTAPWAALTLAGTFGVYGLLRKKLPVAPLTGLAVETGLMLPLAVA
YLSWRVAEGAPLLGGSPELGAALLASGPVTALPLLWFAAAASRLRYATLGFFQYLAPTGHFLLAVLVYGESPGPAHLITF
GCIWAAIGLYLADSWRHSRR
>Mature_259_residues
PPTEVLAYRVIWSLLTVMIMLTWTGRWGEVLVLLASGRRLAVLAASTACISVNWLVFIRVVGEGNVLEASMGYFLNPLVN
VALGVVVLGERLRPLQWVAVGLALAGIVELAIGTGTAPWAALTLAGTFGVYGLLRKKLPVAPLTGLAVETGLMLPLAVAY
LSWRVAEGAPLLGGSPELGAALLASGPVTALPLLWFAAAASRLRYATLGFFQYLAPTGHFLLAVLVYGESPGPAHLITFG
CIWAAIGLYLADSWRHSRR

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=260, Percent_Identity=43.8461538461538, Blast_Score=216, Evalue=1e-57,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 27571; Mature: 27440

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPPTEVLAYRVIWSLLTVMIMLTWTGRWGEVLVLLASGRRLAVLAASTACISVNWLVFIR
CCHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEECCCEEEEEEECHHHEEEEEEEEEE
VVGEGNVLEASMGYFLNPLVNVALGVVVLGERLRPLQWVAVGLALAGIVELAIGTGTAPW
EECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCH
AALTLAGTFGVYGLLRKKLPVAPLTGLAVETGLMLPLAVAYLSWRVAEGAPLLGGSPELG
HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
AALLASGPVTALPLLWFAAAASRLRYATLGFFQYLAPTGHFLLAVLVYGESPGPAHLITF
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEEECCCCCCHHHHHH
GCIWAAIGLYLADSWRHSRR
HHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PPTEVLAYRVIWSLLTVMIMLTWTGRWGEVLVLLASGRRLAVLAASTACISVNWLVFIR
CHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEECCCEEEEEEECHHHEEEEEEEEEE
VVGEGNVLEASMGYFLNPLVNVALGVVVLGERLRPLQWVAVGLALAGIVELAIGTGTAPW
EECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCH
AALTLAGTFGVYGLLRKKLPVAPLTGLAVETGLMLPLAVAYLSWRVAEGAPLLGGSPELG
HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
AALLASGPVTALPLLWFAAAASRLRYATLGFFQYLAPTGHFLLAVLVYGESPGPAHLITF
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEEECCCCCCHHHHHH
GCIWAAIGLYLADSWRHSRR
HHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1379743; 9278503 [H]