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The map label for this gene is speC [H]

Identifier: 83310207

GI number: 83310207

Start: 1175626

End: 1177977

Strand: Reverse

Name: speC [H]

Synonym: amb1108

Alternate gene names: 83310207

Gene position: 1177977-1175626 (Counterclockwise)

Preceding gene: 83310211

Following gene: 83310206

Centisome position: 23.72

GC content: 64.84

Gene sequence:

>2352_bases
ATGGAATTTTTTCGCCGCCTGACCTTCCTGGTCTGCGCTCCCGCCTTCGATACCGACGACCTTGAGGGCGTGCGCGTCCA
GCAGATCATCACCGAGGTCGAGCGCCTGGGCTTCGAGGTGGTGCGCGCCCGGCGGATCGAGGACGCGGAAATCGCGGTGC
AGACCGACGCCGCCATCGGCTGCGTCCTGGTGGACTGGGAAAAGGGCGGCAAGGGGGCCGAGGCCACCGAGCTGATCAAC
CTGATGCGCCGGCGCGGCCTGGAAATGCCCATCGTCATCCTGGTGCGCGGCGAGCGCTTCGAGGATATTCCGGTGGATGT
GCTGGATTACATCGACGGTTATGTCTTCCTGGCCGAGGAAACCCCCGAATTCATCGCCAAGAATCTGGTCAGCCGCCTCA
AGCAGTTCGCCGAGACCCTGAAGACCCCGTTCTTCGGCGCCTTGGTGGATTACGCCGAGGAAGGCAACCAGCTGTGGACC
TGCCCCGGCCATAACGGCGGCATCTTCTACAACCGCAGCCCCATCGGGCGGATCTTCGTCGAGCATCTGGGCGAGGCGGT
GTTCCGCGACGATCTCGACAATTCCGTGCTGGAGTTGGGCGACCTCTTGACCCATGAAGGGCCGGCGCTGCAGGCCCAGA
AGGAAGCCGCCAAGATCTTCGGGGCCGAGAAAACCTATTTCGTGCTGAACGGCACCTCGGCCTCCAACAAGATCGTGCTG
TCGGCCCTGGTGGCCGAGGACGACCTGGTGCTGTTCGACCGCAACAACCACAAAGCCGCCCATCACGGCGCCCTGCTGCT
GGGCGGCGGCATTCCCATCTTCCTGGAAACCGACCGCAACGCCATGGGCATGATCGGCCCCATCTACGCCGAGGCCTTCG
ACGAGCAGGCCATCCGCGCCAAGATCCGCGACAATCCCCTGGTCAAGGACCCGGAGGCCTGGAAGAAGCCCCGCCCCTTC
CGGGTGGCGGTCATCGAGCAGTGCACCTATGACGGCACCATTTACAGCGCCGAGCACATTCTCGAACGGATCGGCCACCT
GTGCGACTACATCCTGTTCGACGAGGCCTGGGCCGGCTTCCTCAAGTTCCACCCGCTGTTCCGGGGGTGCTACGGCATGG
GGCTGAAGGACCGCCTGGACGAGGATTCGCCCGGCATCATCTCGACCCAGTCCACCCACAAGCAGATGGCCGGCTTCTCC
CAGGCGTCGCAGATCCACGTGCGCGACCGCCACATCAAGGGCCAAAGCCGCCGCATCGAGCACCGCCGCTTCAACGAGAC
CTTCCTGCTGCACGCCTCGACCTCGCCGTTCTACCCGCTGTTCGCGTCGCTGGACGTGGGAGCCCAGATGATGCGCGGAC
GCTCGGGCGAGGTGCTGTGGGACGACACCATCGATCTCGGCATCGAACTGCGCAAGAAGGTCCGGGCCATCAAGCGCGAA
TTCGTCGAGAAGGAAAAGGACAGTGCCCGCCACTGGTTCTTCGAGCCTTTCGTACCCGACCGGGTGCCCTCGCCCGAAGG
CGGCGAGACCATGGTGGCCTGGGAGGACCTGCCCACCGAGACCATCGCCGCCGATCCGCGCTACTGGGAATTCACCCCCG
GCGCCCGCTGGCACGGCTTCAAGCATGTGAGCCGGTCGGGCTATGCCATGACCGACCCCAACAAGCTGACCCTGATCACC
CCCGGCTTCAACCGCGACACCGGGGCCTATGCCGAATACGGCATCCCCGCCCCGGTGGTGGCCCAATACCTGCGTGAAAA
CCGGGTGGTGCCGGAAAAGAACGACCTTAATTCCATGCTGTTCCTGCTGACGCCGGGCGTGGAATCCAGCAAGGCGGGCA
CCCTGCTCAGCTCGCTGGTGGCCTTCAAGCGCCGCCACGACGACAATGCCCTGCTGGACGATGCCATCCCCGAATTCGTC
CGGCGGCGGCCCCAGCGCTATCGCGGCCTGCGTATCCAGGACCTGTGCGCCGAGATGCACGCCTTCTTCCGCGACCGCAA
CGTCAGCACCTTGCAACGCGCCCAGTTCTCGCCCGAGCACCGCCCCCACATGGTGATGCGCCCCAACGACGCGGTGCGCA
TGCTGACCCGCAATCAGGTGGATTACCTGCCCATCGACCAGATCGACGGGCGCATCGCCACCACCTTGTGGGTGGTCTAT
CCCCCCGGCATCGCCACCATCATCCCCGGTGAGCGCCTGTGCGAGCGCGCCCGGCCCATGCTCGACTACCTCAAGATGTT
CGAGCGCAGCGCCAACCTGTTCCCCGGCTTCGAAGCCGAGATTCAGGGGCTTTACCGCGAAATCGAACCGGACGGGTCCA
TCCGCTTTTACACCTACGTCGCCAAGGAGTAG

Upstream 100 bases:

>100_bases
TTTTGTGTCCCCCCGACCGCGCCATGGCAGCCGCCGCCAACCCTGATTAGTCTGCGGCCTCATCGCGCACCCCGCCTCTC
GAAGCCTATTGGAGCGTCCC

Downstream 100 bases:

>100_bases
GCAGTAGCTCTTACAAATAGATACAGGCTTCACCAATAAACAACGAGCAAGCCACAGAGCCTCGGTTAATTTTTTATTTC
ACAGCACTTAAGCTGTTTGA

Product: arginine/lysine/ornithine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 783; Mature: 783

Protein sequence:

>783_residues
MEFFRRLTFLVCAPAFDTDDLEGVRVQQIITEVERLGFEVVRARRIEDAEIAVQTDAAIGCVLVDWEKGGKGAEATELIN
LMRRRGLEMPIVILVRGERFEDIPVDVLDYIDGYVFLAEETPEFIAKNLVSRLKQFAETLKTPFFGALVDYAEEGNQLWT
CPGHNGGIFYNRSPIGRIFVEHLGEAVFRDDLDNSVLELGDLLTHEGPALQAQKEAAKIFGAEKTYFVLNGTSASNKIVL
SALVAEDDLVLFDRNNHKAAHHGALLLGGGIPIFLETDRNAMGMIGPIYAEAFDEQAIRAKIRDNPLVKDPEAWKKPRPF
RVAVIEQCTYDGTIYSAEHILERIGHLCDYILFDEAWAGFLKFHPLFRGCYGMGLKDRLDEDSPGIISTQSTHKQMAGFS
QASQIHVRDRHIKGQSRRIEHRRFNETFLLHASTSPFYPLFASLDVGAQMMRGRSGEVLWDDTIDLGIELRKKVRAIKRE
FVEKEKDSARHWFFEPFVPDRVPSPEGGETMVAWEDLPTETIAADPRYWEFTPGARWHGFKHVSRSGYAMTDPNKLTLIT
PGFNRDTGAYAEYGIPAPVVAQYLRENRVVPEKNDLNSMLFLLTPGVESSKAGTLLSSLVAFKRRHDDNALLDDAIPEFV
RRRPQRYRGLRIQDLCAEMHAFFRDRNVSTLQRAQFSPEHRPHMVMRPNDAVRMLTRNQVDYLPIDQIDGRIATTLWVVY
PPGIATIIPGERLCERARPMLDYLKMFERSANLFPGFEAEIQGLYREIEPDGSIRFYTYVAKE

Sequences:

>Translated_783_residues
MEFFRRLTFLVCAPAFDTDDLEGVRVQQIITEVERLGFEVVRARRIEDAEIAVQTDAAIGCVLVDWEKGGKGAEATELIN
LMRRRGLEMPIVILVRGERFEDIPVDVLDYIDGYVFLAEETPEFIAKNLVSRLKQFAETLKTPFFGALVDYAEEGNQLWT
CPGHNGGIFYNRSPIGRIFVEHLGEAVFRDDLDNSVLELGDLLTHEGPALQAQKEAAKIFGAEKTYFVLNGTSASNKIVL
SALVAEDDLVLFDRNNHKAAHHGALLLGGGIPIFLETDRNAMGMIGPIYAEAFDEQAIRAKIRDNPLVKDPEAWKKPRPF
RVAVIEQCTYDGTIYSAEHILERIGHLCDYILFDEAWAGFLKFHPLFRGCYGMGLKDRLDEDSPGIISTQSTHKQMAGFS
QASQIHVRDRHIKGQSRRIEHRRFNETFLLHASTSPFYPLFASLDVGAQMMRGRSGEVLWDDTIDLGIELRKKVRAIKRE
FVEKEKDSARHWFFEPFVPDRVPSPEGGETMVAWEDLPTETIAADPRYWEFTPGARWHGFKHVSRSGYAMTDPNKLTLIT
PGFNRDTGAYAEYGIPAPVVAQYLRENRVVPEKNDLNSMLFLLTPGVESSKAGTLLSSLVAFKRRHDDNALLDDAIPEFV
RRRPQRYRGLRIQDLCAEMHAFFRDRNVSTLQRAQFSPEHRPHMVMRPNDAVRMLTRNQVDYLPIDQIDGRIATTLWVVY
PPGIATIIPGERLCERARPMLDYLKMFERSANLFPGFEAEIQGLYREIEPDGSIRFYTYVAKE
>Mature_783_residues
MEFFRRLTFLVCAPAFDTDDLEGVRVQQIITEVERLGFEVVRARRIEDAEIAVQTDAAIGCVLVDWEKGGKGAEATELIN
LMRRRGLEMPIVILVRGERFEDIPVDVLDYIDGYVFLAEETPEFIAKNLVSRLKQFAETLKTPFFGALVDYAEEGNQLWT
CPGHNGGIFYNRSPIGRIFVEHLGEAVFRDDLDNSVLELGDLLTHEGPALQAQKEAAKIFGAEKTYFVLNGTSASNKIVL
SALVAEDDLVLFDRNNHKAAHHGALLLGGGIPIFLETDRNAMGMIGPIYAEAFDEQAIRAKIRDNPLVKDPEAWKKPRPF
RVAVIEQCTYDGTIYSAEHILERIGHLCDYILFDEAWAGFLKFHPLFRGCYGMGLKDRLDEDSPGIISTQSTHKQMAGFS
QASQIHVRDRHIKGQSRRIEHRRFNETFLLHASTSPFYPLFASLDVGAQMMRGRSGEVLWDDTIDLGIELRKKVRAIKRE
FVEKEKDSARHWFFEPFVPDRVPSPEGGETMVAWEDLPTETIAADPRYWEFTPGARWHGFKHVSRSGYAMTDPNKLTLIT
PGFNRDTGAYAEYGIPAPVVAQYLRENRVVPEKNDLNSMLFLLTPGVESSKAGTLLSSLVAFKRRHDDNALLDDAIPEFV
RRRPQRYRGLRIQDLCAEMHAFFRDRNVSTLQRAQFSPEHRPHMVMRPNDAVRMLTRNQVDYLPIDQIDGRIATTLWVVY
PPGIATIIPGERLCERARPMLDYLKMFERSANLFPGFEAEIQGLYREIEPDGSIRFYTYVAKE

Specific function: Spermidine biosynthesis from ornithine. [C]

COG id: COG1982

COG function: function code E; Arginine/lysine/ornithine decarboxylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Orn/Lys/Arg decarboxylase class-I family [H]

Homologues:

Organism=Escherichia coli, GI87082193, Length=705, Percent_Identity=44.113475177305, Blast_Score=600, Evalue=1e-173,
Organism=Escherichia coli, GI1786909, Length=692, Percent_Identity=44.6531791907514, Blast_Score=593, Evalue=1e-170,
Organism=Escherichia coli, GI221142684, Length=748, Percent_Identity=32.2192513368984, Blast_Score=439, Evalue=1e-124,
Organism=Escherichia coli, GI1790573, Length=758, Percent_Identity=31.1345646437995, Blast_Score=389, Evalue=1e-109,
Organism=Escherichia coli, GI1786384, Length=729, Percent_Identity=31.1385459533608, Blast_Score=375, Evalue=1e-105,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR005308
- InterPro:   IPR011193
- InterPro:   IPR000310
- InterPro:   IPR008286
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01276 OKR_DC_1; PF03711 OKR_DC_1_C; PF03709 OKR_DC_1_N [H]

EC number: =4.1.1.17 [H]

Molecular weight: Translated: 89066; Mature: 89066

Theoretical pI: Translated: 5.83; Mature: 5.83

Prosite motif: PS00703 OKR_DC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFFRRLTFLVCAPAFDTDDLEGVRVQQIITEVERLGFEVVRARRIEDAEIAVQTDAAIG
CCHHHHHHHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEE
CVLVDWEKGGKGAEATELINLMRRRGLEMPIVILVRGERFEDIPVDVLDYIDGYVFLAEE
EEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHCCCEEEEECC
TPEFIAKNLVSRLKQFAETLKTPFFGALVDYAEEGNQLWTCPGHNGGIFYNRSPIGRIFV
CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEECCCCCCCEEECCCCHHHHHH
EHLGEAVFRDDLDNSVLELGDLLTHEGPALQAQKEAAKIFGAEKTYFVLNGTSASNKIVL
HHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCEEEE
SALVAEDDLVLFDRNNHKAAHHGALLLGGGIPIFLETDRNAMGMIGPIYAEAFDEQAIRA
EEEECCCCEEEEECCCCCCHHCCEEEEECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHH
KIRDNPLVKDPEAWKKPRPFRVAVIEQCTYDGTIYSAEHILERIGHLCDYILFDEAWAGF
HHCCCCCCCCCHHHCCCCCEEEEEEECCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHH
LKFHPLFRGCYGMGLKDRLDEDSPGIISTQSTHKQMAGFSQASQIHVRDRHIKGQSRRIE
HHHHHHHHHHHCCCCHHHCCCCCCCEEECCHHHHHHHCCCCCCEEEEEHHCCCCCHHHHH
HRRFNETFLLHASTSPFYPLFASLDVGAQMMRGRSGEVLWDDTIDLGIELRKKVRAIKRE
HHCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHHHH
FVEKEKDSARHWFFEPFVPDRVPSPEGGETMVAWEDLPTETIAADPRYWEFTPGARWHGF
HHHHHCCCCCCEEECCCCCCCCCCCCCCCEEEEECCCCCHHHCCCCCEEECCCCCCCCCH
KHVSRSGYAMTDPNKLTLITPGFNRDTGAYAEYGIPAPVVAQYLRENRVVPEKNDLNSML
HHHCCCCCEECCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEE
FLLTPGVESSKAGTLLSSLVAFKRRHDDNALLDDAIPEFVRRRPQRYRGLRIQDLCAEMH
EEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCHHHHCCCCHHHHHHHHH
AFFRDRNVSTLQRAQFSPEHRPHMVMRPNDAVRMLTRNQVDYLPIDQIDGRIATTLWVVY
HHHHCCCHHHHHHHCCCCCCCCEEEECCCHHHHHHHCCCCCCCCHHHCCCEEEEEEEEEE
PPGIATIIPGERLCERARPMLDYLKMFERSANLFPGFEAEIQGLYREIEPDGSIRFYTYV
CCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEE
AKE
ECC
>Mature Secondary Structure
MEFFRRLTFLVCAPAFDTDDLEGVRVQQIITEVERLGFEVVRARRIEDAEIAVQTDAAIG
CCHHHHHHHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEE
CVLVDWEKGGKGAEATELINLMRRRGLEMPIVILVRGERFEDIPVDVLDYIDGYVFLAEE
EEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHCCCEEEEECC
TPEFIAKNLVSRLKQFAETLKTPFFGALVDYAEEGNQLWTCPGHNGGIFYNRSPIGRIFV
CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEECCCCCCCEEECCCCHHHHHH
EHLGEAVFRDDLDNSVLELGDLLTHEGPALQAQKEAAKIFGAEKTYFVLNGTSASNKIVL
HHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCEEEE
SALVAEDDLVLFDRNNHKAAHHGALLLGGGIPIFLETDRNAMGMIGPIYAEAFDEQAIRA
EEEECCCCEEEEECCCCCCHHCCEEEEECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHH
KIRDNPLVKDPEAWKKPRPFRVAVIEQCTYDGTIYSAEHILERIGHLCDYILFDEAWAGF
HHCCCCCCCCCHHHCCCCCEEEEEEECCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHH
LKFHPLFRGCYGMGLKDRLDEDSPGIISTQSTHKQMAGFSQASQIHVRDRHIKGQSRRIE
HHHHHHHHHHHCCCCHHHCCCCCCCEEECCHHHHHHHCCCCCCEEEEEHHCCCCCHHHHH
HRRFNETFLLHASTSPFYPLFASLDVGAQMMRGRSGEVLWDDTIDLGIELRKKVRAIKRE
HHCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHHHH
FVEKEKDSARHWFFEPFVPDRVPSPEGGETMVAWEDLPTETIAADPRYWEFTPGARWHGF
HHHHHCCCCCCEEECCCCCCCCCCCCCCCEEEEECCCCCHHHCCCCCEEECCCCCCCCCH
KHVSRSGYAMTDPNKLTLITPGFNRDTGAYAEYGIPAPVVAQYLRENRVVPEKNDLNSML
HHHCCCCCEECCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEE
FLLTPGVESSKAGTLLSSLVAFKRRHDDNALLDDAIPEFVRRRPQRYRGLRIQDLCAEMH
EEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCHHHHCCCCHHHHHHHHH
AFFRDRNVSTLQRAQFSPEHRPHMVMRPNDAVRMLTRNQVDYLPIDQIDGRIATTLWVVY
HHHHCCCHHHHHHHCCCCCCCCEEEECCCHHHHHHHCCCCCCCCHHHCCCEEEEEEEEEE
PPGIATIIPGERLCERARPMLDYLKMFERSANLFPGFEAEIQGLYREIEPDGSIRFYTYV
CCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEE
AKE
ECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]