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The map label for this gene is yciR [C]

Identifier: 83310203

GI number: 83310203

Start: 1169594

End: 1171642

Strand: Reverse

Name: yciR [C]

Synonym: amb1104

Alternate gene names: 83310203

Gene position: 1171642-1169594 (Counterclockwise)

Preceding gene: 83310204

Following gene: 83310201

Centisome position: 23.59

GC content: 65.79

Gene sequence:

>2049_bases
ATGCCCTTGGCCCATCGAACGCCGAAATCCATCGGCCGCAAGCTTCTGCTGATCGTTCTGCCGTCCCTGCTGTTCGGCAC
GGTGGTGATGTTCTCGGCCTTCGAGCATTACAGCGTCCGCGACCGGCTTTCGGCCCTCAACTCCCGCCTGGACAGCTTTG
CCATCACCCAGGGAGCCGCACTGGTCAAACCCCTGTGGGAATTCGATTTCGCCGCGGTGCAGCGGCAATTCCAGTCCTAC
CCCGATGTCCCGGAACTGTTCGAGGCGACGGTCTTCGGCATCGGCGGCGAGATCGTCGCCTCGGCGCAGGGAGGCGACAC
CGACGGGCGGCGGGACGTTTTCCGCAAGGTCGTGCCCCTGATCCAGCAGACGCCGGGCGGCGAATATCCCGTCGGCCGGC
TGGAAGTGGCCTTCCACGACGGAAAGGTGCGCAGCGAACTGGTCCGTCAGCGGGCCGGAGCGGCCATCGTGCTGTCCGGC
GCCTTCCTCCTGGTGACCGCCGTCCTGCTGGCGGCGGTGCGCCACCTGGTCACCGGTCCGTTGACCCGGCTGCGCAACTC
GCTGCACCACAATGCCTCGGTGCTGATGCGCGAGCCCCTGGTGTGGTCGAGCCGCGACGAGCTGGGCGAGGTGGTCCACG
CCTACAACCAGCTCCTGACCGAGATCGACCAGCGAACCGAGGACATTCACCAATTGGCCAATCGGGACCTGCTGACCGGC
CTGCCCAACCGGCGCCTGCTGGAGGACCGCATCGGCCACGCCATCGCCCTGGCCGGCCGCCAGAACCGCTCCATCGCGCT
GCTGTTCGCCGACATCGACAATTTCAAGGTGGTCAACGACACCCTGGGCCACAAGCAGGGCGATGCCCTGCTCAGGATCA
TCGCCGACCGGATTCACGACATCATGCGCGGCATGGACACCGTCGCCCGCTGGGGCGGTGACGAATTCGTGATCGTGGTG
GAAAGCCTGAACTCGGCGGGCGAGGCCGCCAGCGTCGCCGAGAAGCTGATCGAGACCATCGGCGTGCCGGTCCAACTGGG
CAGCAATCTGCTGCGGGTCGGCGTCTCCGTCGGCATCAGCATGTATCCCCAGGACGGCGCCGACATCACCACCTTGATCA
AGAACGCCGACATGGCCCTGTTCGAGGCCAAGGGACGGGGGCGCAACACCTTCCACTTCTTCGACCAGGCCATGAATGCC
CGGGCCTTGCGCCGCATGGACATCGAGATGGCGCTGCGCCAGGCCATTCCCCAGAATCAGCTGGAGCTGCACTACCAGCC
CAAGATCGCCTCGGCCAGCGGCGCCCTGGCCGGCGTGGAGGCCCTGGTCCGCTGGCGCCGCCCCGGCGAGGGGCTGGTGC
AGCCCGACGAATTCATTCCCCTGGCCGAGGAAAGCGACCTGATCGTCGCCGTTGGCGAATGGGTTCTCAACGAAGCCTGC
CGCCAGATCAGGGACTGGGAGGCTAGAGGCTTCGGCGAGGTGGCCGTGGCGGTCAACCTCTCGCCCCGCCATTTCCTGCA
CGAGAAGGATGTGGACGGCATCTTCCGCATCGTCGACCAATCCGGCGTCAGACCCGATCTGATCGAGGTCGAGGTCACCG
AATCCACCTTCATGCACGAGCCGGAAAAGGTGATCGGCTATCTCAACCGGCTGCGGGACCGGGGGTTCGGCATCGCCATC
GACGATTTCGGCAGCGGCTATTCCAGCCTGTCCTACCTGCGGCGCCTGCCCATCACCACCTTGAAGATCGACCGCGCCTT
CGTGATGGATATCGAGCACAACGCCGACAATGCCGAGATCATCCGCGCCATCATCGCCATGGCCAATGCCATGGGGCTGG
GGCTGATCGCCGAAGGGGTGGAGAACCGGCATCAGTTCGAGTTCCTGCGCCATGCCGATTGCGGCGTGGTCCAGGGCTAC
TACTTCTCGCGCCCCCTGCCGCCCGCCGATCTCGAAGCGCAACTGGTCCGCCAGGGAGCGGATTCCATGGCGCCGCTATC
ACTCTCGGCCTCGCAGACTGGGCTGCAGCCCGTCTTCGCCACCAGTTGA

Upstream 100 bases:

>100_bases
CGCCGGGCGAACGCCAGCGGCGGCTGGCCGATATCAACCGCCGTATCGCCCAATTGGAAGGCCGCTCCGGCGCCATGGAA
AGCGGGGGAGGACAATGACC

Downstream 100 bases:

>100_bases
CGCCCCTTCGGGGGCTTTTGCCCCCGATCCCCCAACCGGGAAGCACAGCTTCCCGGCCCCTTCATCTTTTCAATCCATTG
AAATAGAAAGAAACTGGCGG

Product: signal transduction protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 682; Mature: 681

Protein sequence:

>682_residues
MPLAHRTPKSIGRKLLLIVLPSLLFGTVVMFSAFEHYSVRDRLSALNSRLDSFAITQGAALVKPLWEFDFAAVQRQFQSY
PDVPELFEATVFGIGGEIVASAQGGDTDGRRDVFRKVVPLIQQTPGGEYPVGRLEVAFHDGKVRSELVRQRAGAAIVLSG
AFLLVTAVLLAAVRHLVTGPLTRLRNSLHHNASVLMREPLVWSSRDELGEVVHAYNQLLTEIDQRTEDIHQLANRDLLTG
LPNRRLLEDRIGHAIALAGRQNRSIALLFADIDNFKVVNDTLGHKQGDALLRIIADRIHDIMRGMDTVARWGGDEFVIVV
ESLNSAGEAASVAEKLIETIGVPVQLGSNLLRVGVSVGISMYPQDGADITTLIKNADMALFEAKGRGRNTFHFFDQAMNA
RALRRMDIEMALRQAIPQNQLELHYQPKIASASGALAGVEALVRWRRPGEGLVQPDEFIPLAEESDLIVAVGEWVLNEAC
RQIRDWEARGFGEVAVAVNLSPRHFLHEKDVDGIFRIVDQSGVRPDLIEVEVTESTFMHEPEKVIGYLNRLRDRGFGIAI
DDFGSGYSSLSYLRRLPITTLKIDRAFVMDIEHNADNAEIIRAIIAMANAMGLGLIAEGVENRHQFEFLRHADCGVVQGY
YFSRPLPPADLEAQLVRQGADSMAPLSLSASQTGLQPVFATS

Sequences:

>Translated_682_residues
MPLAHRTPKSIGRKLLLIVLPSLLFGTVVMFSAFEHYSVRDRLSALNSRLDSFAITQGAALVKPLWEFDFAAVQRQFQSY
PDVPELFEATVFGIGGEIVASAQGGDTDGRRDVFRKVVPLIQQTPGGEYPVGRLEVAFHDGKVRSELVRQRAGAAIVLSG
AFLLVTAVLLAAVRHLVTGPLTRLRNSLHHNASVLMREPLVWSSRDELGEVVHAYNQLLTEIDQRTEDIHQLANRDLLTG
LPNRRLLEDRIGHAIALAGRQNRSIALLFADIDNFKVVNDTLGHKQGDALLRIIADRIHDIMRGMDTVARWGGDEFVIVV
ESLNSAGEAASVAEKLIETIGVPVQLGSNLLRVGVSVGISMYPQDGADITTLIKNADMALFEAKGRGRNTFHFFDQAMNA
RALRRMDIEMALRQAIPQNQLELHYQPKIASASGALAGVEALVRWRRPGEGLVQPDEFIPLAEESDLIVAVGEWVLNEAC
RQIRDWEARGFGEVAVAVNLSPRHFLHEKDVDGIFRIVDQSGVRPDLIEVEVTESTFMHEPEKVIGYLNRLRDRGFGIAI
DDFGSGYSSLSYLRRLPITTLKIDRAFVMDIEHNADNAEIIRAIIAMANAMGLGLIAEGVENRHQFEFLRHADCGVVQGY
YFSRPLPPADLEAQLVRQGADSMAPLSLSASQTGLQPVFATS
>Mature_681_residues
PLAHRTPKSIGRKLLLIVLPSLLFGTVVMFSAFEHYSVRDRLSALNSRLDSFAITQGAALVKPLWEFDFAAVQRQFQSYP
DVPELFEATVFGIGGEIVASAQGGDTDGRRDVFRKVVPLIQQTPGGEYPVGRLEVAFHDGKVRSELVRQRAGAAIVLSGA
FLLVTAVLLAAVRHLVTGPLTRLRNSLHHNASVLMREPLVWSSRDELGEVVHAYNQLLTEIDQRTEDIHQLANRDLLTGL
PNRRLLEDRIGHAIALAGRQNRSIALLFADIDNFKVVNDTLGHKQGDALLRIIADRIHDIMRGMDTVARWGGDEFVIVVE
SLNSAGEAASVAEKLIETIGVPVQLGSNLLRVGVSVGISMYPQDGADITTLIKNADMALFEAKGRGRNTFHFFDQAMNAR
ALRRMDIEMALRQAIPQNQLELHYQPKIASASGALAGVEALVRWRRPGEGLVQPDEFIPLAEESDLIVAVGEWVLNEACR
QIRDWEARGFGEVAVAVNLSPRHFLHEKDVDGIFRIVDQSGVRPDLIEVEVTESTFMHEPEKVIGYLNRLRDRGFGIAID
DFGSGYSSLSYLRRLPITTLKIDRAFVMDIEHNADNAEIIRAIIAMANAMGLGLIAEGVENRHQFEFLRHADCGVVQGYY
FSRPLPPADLEAQLVRQGADSMAPLSLSASQTGLQPVFATS

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=434, Percent_Identity=37.5576036866359, Blast_Score=291, Evalue=1e-79,
Organism=Escherichia coli, GI87081921, Length=435, Percent_Identity=34.7126436781609, Blast_Score=256, Evalue=3e-69,
Organism=Escherichia coli, GI226510982, Length=447, Percent_Identity=29.3064876957494, Blast_Score=211, Evalue=1e-55,
Organism=Escherichia coli, GI87081845, Length=244, Percent_Identity=36.4754098360656, Blast_Score=159, Evalue=5e-40,
Organism=Escherichia coli, GI1790496, Length=239, Percent_Identity=36.8200836820084, Blast_Score=151, Evalue=1e-37,
Organism=Escherichia coli, GI87081743, Length=252, Percent_Identity=33.7301587301587, Blast_Score=140, Evalue=4e-34,
Organism=Escherichia coli, GI87081980, Length=251, Percent_Identity=32.6693227091633, Blast_Score=134, Evalue=2e-32,
Organism=Escherichia coli, GI1788502, Length=239, Percent_Identity=31.7991631799163, Blast_Score=125, Evalue=8e-30,
Organism=Escherichia coli, GI1786507, Length=237, Percent_Identity=28.6919831223629, Blast_Score=120, Evalue=4e-28,
Organism=Escherichia coli, GI87082096, Length=447, Percent_Identity=25.503355704698, Blast_Score=112, Evalue=5e-26,
Organism=Escherichia coli, GI1787055, Length=417, Percent_Identity=23.7410071942446, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1787816, Length=228, Percent_Identity=32.4561403508772, Blast_Score=100, Evalue=5e-22,
Organism=Escherichia coli, GI145693134, Length=218, Percent_Identity=31.651376146789, Blast_Score=99, Evalue=1e-21,
Organism=Escherichia coli, GI1788849, Length=251, Percent_Identity=28.6852589641434, Blast_Score=96, Evalue=7e-21,
Organism=Escherichia coli, GI87081977, Length=201, Percent_Identity=30.8457711442786, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI1788381, Length=408, Percent_Identity=25.2450980392157, Blast_Score=94, Evalue=4e-20,
Organism=Escherichia coli, GI1786584, Length=245, Percent_Identity=29.7959183673469, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI87081881, Length=177, Percent_Identity=35.5932203389831, Blast_Score=83, Evalue=5e-17,
Organism=Escherichia coli, GI1788956, Length=282, Percent_Identity=26.9503546099291, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1787802, Length=183, Percent_Identity=30.0546448087432, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI1787262, Length=169, Percent_Identity=28.9940828402367, Blast_Score=73, Evalue=6e-14,
Organism=Escherichia coli, GI87082007, Length=168, Percent_Identity=32.7380952380952, Blast_Score=73, Evalue=7e-14,
Organism=Escherichia coli, GI1788085, Length=182, Percent_Identity=29.6703296703297, Blast_Score=66, Evalue=7e-12,
Organism=Escherichia coli, GI1787410, Length=158, Percent_Identity=25.9493670886076, Blast_Score=66, Evalue=1e-11,
Organism=Escherichia coli, GI87081974, Length=124, Percent_Identity=31.4516129032258, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 75266; Mature: 75135

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: PS50885 HAMP ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLAHRTPKSIGRKLLLIVLPSLLFGTVVMFSAFEHYSVRDRLSALNSRLDSFAITQGAA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
LVKPLWEFDFAAVQRQFQSYPDVPELFEATVFGIGGEIVASAQGGDTDGRRDVFRKVVPL
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHH
IQQTPGGEYPVGRLEVAFHDGKVRSELVRQRAGAAIVLSGAFLLVTAVLLAAVRHLVTGP
HHCCCCCCCCCCEEEEEEECCHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHH
LTRLRNSLHHNASVLMREPLVWSSRDELGEVVHAYNQLLTEIDQRTEDIHQLANRDLLTG
HHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHC
LPNRRLLEDRIGHAIALAGRQNRSIALLFADIDNFKVVNDTLGHKQGDALLRIIADRIHD
CCCCHHHHHHCCCEEEEECCCCCEEEEEEEECCCCEEEHHHCCCCCHHHHHHHHHHHHHH
IMRGMDTVARWGGDEFVIVVESLNSAGEAASVAEKLIETIGVPVQLGSNLLRVGVSVGIS
HHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCE
MYPQDGADITTLIKNADMALFEAKGRGRNTFHFFDQAMNARALRRMDIEMALRQAIPQNQ
ECCCCCCHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
LELHYQPKIASASGALAGVEALVRWRRPGEGLVQPDEFIPLAEESDLIVAVGEWVLNEAC
EEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCEEEEHHHHHHHHHH
RQIRDWEARGFGEVAVAVNLSPRHFLHEKDVDGIFRIVDQSGVRPDLIEVEVTESTFMHE
HHHHHHCCCCCCCEEEEEECCHHHHHCCCCHHHHHHHHHHCCCCCCEEEEEECCHHHHCC
PEKVIGYLNRLRDRGFGIAIDDFGSGYSSLSYLRRLPITTLKIDRAFVMDIEHNADNAEI
HHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCEEEEEECCCCCHHHH
IRAIIAMANAMGLGLIAEGVENRHQFEFLRHADCGVVQGYYFSRPLPPADLEAQLVRQGA
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHCCC
DSMAPLSLSASQTGLQPVFATS
CCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PLAHRTPKSIGRKLLLIVLPSLLFGTVVMFSAFEHYSVRDRLSALNSRLDSFAITQGAA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
LVKPLWEFDFAAVQRQFQSYPDVPELFEATVFGIGGEIVASAQGGDTDGRRDVFRKVVPL
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHH
IQQTPGGEYPVGRLEVAFHDGKVRSELVRQRAGAAIVLSGAFLLVTAVLLAAVRHLVTGP
HHCCCCCCCCCCEEEEEEECCHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHH
LTRLRNSLHHNASVLMREPLVWSSRDELGEVVHAYNQLLTEIDQRTEDIHQLANRDLLTG
HHHHHHHHCCCCHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHC
LPNRRLLEDRIGHAIALAGRQNRSIALLFADIDNFKVVNDTLGHKQGDALLRIIADRIHD
CCCCHHHHHHCCCEEEEECCCCCEEEEEEEECCCCEEEHHHCCCCCHHHHHHHHHHHHHH
IMRGMDTVARWGGDEFVIVVESLNSAGEAASVAEKLIETIGVPVQLGSNLLRVGVSVGIS
HHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCE
MYPQDGADITTLIKNADMALFEAKGRGRNTFHFFDQAMNARALRRMDIEMALRQAIPQNQ
ECCCCCCHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
LELHYQPKIASASGALAGVEALVRWRRPGEGLVQPDEFIPLAEESDLIVAVGEWVLNEAC
EEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCEEEEHHHHHHHHHH
RQIRDWEARGFGEVAVAVNLSPRHFLHEKDVDGIFRIVDQSGVRPDLIEVEVTESTFMHE
HHHHHHCCCCCCCEEEEEECCHHHHHCCCCHHHHHHHHHHCCCCCCEEEEEECCHHHHCC
PEKVIGYLNRLRDRGFGIAIDDFGSGYSSLSYLRRLPITTLKIDRAFVMDIEHNADNAEI
HHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCEEEEEECCCCCHHHH
IRAIIAMANAMGLGLIAEGVENRHQFEFLRHADCGVVQGYYFSRPLPPADLEAQLVRQGA
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHCCC
DSMAPLSLSASQTGLQPVFATS
CCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]