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The map label for this gene is rfbA [H]

Identifier: 83310162

GI number: 83310162

Start: 1125607

End: 1126395

Strand: Reverse

Name: rfbA [H]

Synonym: amb1063

Alternate gene names: 83310162

Gene position: 1126395-1125607 (Counterclockwise)

Preceding gene: 83310163

Following gene: 83310161

Centisome position: 22.68

GC content: 58.3

Gene sequence:

>789_bases
ATGGAGTCCAGGCCTGCGTTGATCTTCATCGGCTTGGTTTGGGCTCGCGCCAAGGCGGACTTTGGCTCTCGCTATGCGGG
CTCGGCCCTTGGGACTCTCTGGAACGCCCTTCAGCCCATCCTGACGATCGCTGTCTTCTCCGCCGTGTTCGAGACCATTC
TGCGCGTTCGGCTGCCGAAGGGCGACTTGCCCTTTGGCTACACCTTGTACCTCTGCGCGGGCTATTTTCCGTGGCTCGCG
TTCAGCGAATCGATGACCCTGGGGGCCGGCGCATTCCTGCGAAATGCCCAGTTCATCCGTAAAATGCCGGTGCCAGCCTA
TCTGTTTGTTGCCGATGTGGTGCTGACGTCCTTCATCTTCCTCGCGGTCAATTTCGCCATTTTCCTCCTGCTCTCGATCT
TCGCCGGCAACCCGGTATCCCTGACTTGGGCGCTGATCCCGATCATCTTCCTGGTTCTGTGGGTCTACACATATTGCCTC
GGCCTGATCGTCGGGCTGGTGAACACCTATTTCCGGGATGTCGGACTGGCGGTTCCGATCATTCTGCAGCTGTGGATGTG
GATGACGCCCATCGTATACCCGATTGAAGCCGTGCCGGAATCGTTCCAAAAACTTCTGATGATCAACCCGCTGACACCGG
TCTTGGCAATGTTGCGCGACGCGACCCTTAACGGACGGATGCCGGCCCGTCATGATCTGACCTTGACTGCCTTGTGGACA
ATCGTGTTGATCGCATTGGCGACGCTTGCTTGGCGACGGTTGGGCCGTGACGTGAGAGACCTGCTATGA

Upstream 100 bases:

>100_bases
GCAGCCATCCGCCCTTTGGATTACTGTCCCCCGGCTTCGCGCACGGATCATACGGCACGGAGTGAGAGGGAGACAGAATG
TCTGGCGGAGAGCACCGTCT

Downstream 100 bases:

>100_bases
GCGCGGCGGATCGGCCTTCCGCCCACCGGGAGGCGGTGTCCTTATCGGTTCGGAATCTTTCAAAATTCTTCAAGATCTAC
CGGAACTCCGGCGACCGCCT

Product: ABC-type polysaccharide/polyol phosphate export systems

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MESRPALIFIGLVWARAKADFGSRYAGSALGTLWNALQPILTIAVFSAVFETILRVRLPKGDLPFGYTLYLCAGYFPWLA
FSESMTLGAGAFLRNAQFIRKMPVPAYLFVADVVLTSFIFLAVNFAIFLLLSIFAGNPVSLTWALIPIIFLVLWVYTYCL
GLIVGLVNTYFRDVGLAVPIILQLWMWMTPIVYPIEAVPESFQKLLMINPLTPVLAMLRDATLNGRMPARHDLTLTALWT
IVLIALATLAWRRLGRDVRDLL

Sequences:

>Translated_262_residues
MESRPALIFIGLVWARAKADFGSRYAGSALGTLWNALQPILTIAVFSAVFETILRVRLPKGDLPFGYTLYLCAGYFPWLA
FSESMTLGAGAFLRNAQFIRKMPVPAYLFVADVVLTSFIFLAVNFAIFLLLSIFAGNPVSLTWALIPIIFLVLWVYTYCL
GLIVGLVNTYFRDVGLAVPIILQLWMWMTPIVYPIEAVPESFQKLLMINPLTPVLAMLRDATLNGRMPARHDLTLTALWT
IVLIALATLAWRRLGRDVRDLL
>Mature_262_residues
MESRPALIFIGLVWARAKADFGSRYAGSALGTLWNALQPILTIAVFSAVFETILRVRLPKGDLPFGYTLYLCAGYFPWLA
FSESMTLGAGAFLRNAQFIRKMPVPAYLFVADVVLTSFIFLAVNFAIFLLLSIFAGNPVSLTWALIPIIFLVLWVYTYCL
GLIVGLVNTYFRDVGLAVPIILQLWMWMTPIVYPIEAVPESFQKLLMINPLTPVLAMLRDATLNGRMPARHDLTLTALWT
IVLIALATLAWRRLGRDVRDLL

Specific function: May form an ATP-driven O-antigen export apparatus, in association with rfbB [H]

COG id: COG1682

COG function: function code GM; ABC-type polysaccharide/polyol phosphate export systems, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 29335; Mature: 29335

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHCHHHHHHC
>Mature Secondary Structure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HHHHHHHHHHHHHHCHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7533882 [H]