The gene/protein map for NC_007626 is currently unavailable.
Definition Magnetospirillum magneticum AMB-1 chromosome, complete genome.
Accession NC_007626
Length 4,967,148

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The map label for this gene is gdhII [H]

Identifier: 83309979

GI number: 83309979

Start: 941324

End: 942076

Strand: Reverse

Name: gdhII [H]

Synonym: amb0880

Alternate gene names: 83309979

Gene position: 942076-941324 (Counterclockwise)

Preceding gene: 83309981

Following gene: 83309975

Centisome position: 18.97

GC content: 69.85

Gene sequence:

>753_bases
ATGACCAGTTCCCTCAGCGGCAAAGTCGCCGTCGTCACCGGTGCCAGCAGCGGCATCGGCCATGCCATCGCCCAGCGCTT
CCTGGCCGAAGGCGCCAAGGTCGCCGTCTTCGCCCGCAATGCCGCCGCCCTGGCCGACCTCGCCAAGGGCCGCGAGGATT
CGGTGCTGGCGGTGACCGGCGACGTCACCTGCGCCGCCGACCTGGAACGGCTGGTGGCCGAAACGGTGAAGCGGTTTGGC
GGCGTCGACATGGTCATCCCCAACGCGGGCATCGCCAAGGTGGTGCCGTTCGAGCAGAGCGACGCGGCGGCCATCGACCA
CCAGTTCGCCGTCAATTTCACCGGCGCGGTGCAGACGGTGCGCGGCTTCCTGCCCCATATCCGCCAGGGCGGATCGGTGC
TGTTCGTCACCACCTTCCTGACCCAGGTCGGCTTTCCCGGCCTGGCCATCTACAGCGCCAGCAAGGCGGCGCTGAAGTCG
TTCTCGCAGACCCTGGCCGCCGAACTGGCCCCCAAGGGCATCCGGGTGAACTCGGTCGCCCCCGGCCCCATCGGCACCCC
CATCTGGGGCAGCATCGGCCTGCCGGCCGACGTGTTGCAGGCGGTGGCCACCCAGGTGACGGCGCGCCTGATGCCCGGCG
CCTTCGGCGAGCCCGGCGACATCGCCGCCACCGCCGCCTTCCTGTGCTCGGATCAGGCCAAGAATATCTGGGGCCAGGAG
ATCGTGGTCGACGGCGGCTACACCATCGGCTGA

Upstream 100 bases:

>100_bases
TCGTCGGGAATGGAGGGGGCGGCTTGACCGGCCTCAAAGCGGTCCGGGCGCCATCCGTGCGCTTTTGGCTCATCCCTCCC
TGTCCAAGGATATAGTCACC

Downstream 100 bases:

>100_bases
CCCATCCTCTTCCCCTCCCCCCGCCCCTGGTGGGGGGAGGGCGGGAGGGGGGATCTGGTATTAAACGGCCTCCACGTCCG
CGCCCATGGCCAGATTGCCC

Product: dehydrogenase

Products: NA

Alternate protein names: GLCDH-II [H]

Number of amino acids: Translated: 250; Mature: 249

Protein sequence:

>250_residues
MTSSLSGKVAVVTGASSGIGHAIAQRFLAEGAKVAVFARNAAALADLAKGREDSVLAVTGDVTCAADLERLVAETVKRFG
GVDMVIPNAGIAKVVPFEQSDAAAIDHQFAVNFTGAVQTVRGFLPHIRQGGSVLFVTTFLTQVGFPGLAIYSASKAALKS
FSQTLAAELAPKGIRVNSVAPGPIGTPIWGSIGLPADVLQAVATQVTARLMPGAFGEPGDIAATAAFLCSDQAKNIWGQE
IVVDGGYTIG

Sequences:

>Translated_250_residues
MTSSLSGKVAVVTGASSGIGHAIAQRFLAEGAKVAVFARNAAALADLAKGREDSVLAVTGDVTCAADLERLVAETVKRFG
GVDMVIPNAGIAKVVPFEQSDAAAIDHQFAVNFTGAVQTVRGFLPHIRQGGSVLFVTTFLTQVGFPGLAIYSASKAALKS
FSQTLAAELAPKGIRVNSVAPGPIGTPIWGSIGLPADVLQAVATQVTARLMPGAFGEPGDIAATAAFLCSDQAKNIWGQE
IVVDGGYTIG
>Mature_249_residues
TSSLSGKVAVVTGASSGIGHAIAQRFLAEGAKVAVFARNAAALADLAKGREDSVLAVTGDVTCAADLERLVAETVKRFGG
VDMVIPNAGIAKVVPFEQSDAAAIDHQFAVNFTGAVQTVRGFLPHIRQGGSVLFVTTFLTQVGFPGLAIYSASKAALKSF
SQTLAAELAPKGIRVNSVAPGPIGTPIWGSIGLPADVLQAVATQVTARLMPGAFGEPGDIAATAAFLCSDQAKNIWGQEI
VVDGGYTIG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=252, Percent_Identity=35.7142857142857, Blast_Score=127, Evalue=1e-29,
Organism=Homo sapiens, GI5031737, Length=254, Percent_Identity=34.6456692913386, Blast_Score=110, Evalue=9e-25,
Organism=Homo sapiens, GI126723750, Length=252, Percent_Identity=33.7301587301587, Blast_Score=109, Evalue=2e-24,
Organism=Homo sapiens, GI40254992, Length=249, Percent_Identity=32.9317269076305, Blast_Score=102, Evalue=2e-22,
Organism=Homo sapiens, GI33667109, Length=188, Percent_Identity=37.7659574468085, Blast_Score=101, Evalue=6e-22,
Organism=Homo sapiens, GI59889578, Length=227, Percent_Identity=29.5154185022026, Blast_Score=96, Evalue=4e-20,
Organism=Homo sapiens, GI19923817, Length=259, Percent_Identity=27.7992277992278, Blast_Score=94, Evalue=9e-20,
Organism=Homo sapiens, GI126723191, Length=185, Percent_Identity=36.2162162162162, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI7705925, Length=253, Percent_Identity=29.2490118577075, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI4503817, Length=194, Percent_Identity=29.8969072164948, Blast_Score=85, Evalue=7e-17,
Organism=Homo sapiens, GI15277342, Length=260, Percent_Identity=31.1538461538462, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI4758504, Length=256, Percent_Identity=30.078125, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI20149619, Length=195, Percent_Identity=29.7435897435897, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI7706318, Length=195, Percent_Identity=28.2051282051282, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI66933014, Length=253, Percent_Identity=28.4584980237154, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI10190704, Length=250, Percent_Identity=30, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI31542939, Length=245, Percent_Identity=26.530612244898, Blast_Score=75, Evalue=4e-14,
Organism=Homo sapiens, GI32455239, Length=181, Percent_Identity=31.4917127071823, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI5031765, Length=181, Percent_Identity=31.4917127071823, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI7657478, Length=196, Percent_Identity=29.5918367346939, Blast_Score=71, Evalue=8e-13,
Organism=Homo sapiens, GI223718074, Length=218, Percent_Identity=29.8165137614679, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI226371731, Length=208, Percent_Identity=28.8461538461538, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI4503301, Length=255, Percent_Identity=30.1960784313725, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI157739938, Length=192, Percent_Identity=25.5208333333333, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI40807363, Length=196, Percent_Identity=28.0612244897959, Blast_Score=65, Evalue=4e-11,
Organism=Homo sapiens, GI142976729, Length=238, Percent_Identity=26.890756302521, Blast_Score=65, Evalue=4e-11,
Organism=Escherichia coli, GI87082100, Length=257, Percent_Identity=30.3501945525292, Blast_Score=114, Evalue=5e-27,
Organism=Escherichia coli, GI1787335, Length=249, Percent_Identity=34.136546184739, Blast_Score=104, Evalue=7e-24,
Organism=Escherichia coli, GI1786812, Length=258, Percent_Identity=33.7209302325581, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI87082160, Length=252, Percent_Identity=28.1746031746032, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI2367365, Length=250, Percent_Identity=29.2, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1790717, Length=252, Percent_Identity=28.1746031746032, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1789378, Length=253, Percent_Identity=30.0395256916996, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1787905, Length=247, Percent_Identity=31.5789473684211, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1788891, Length=261, Percent_Identity=32.9501915708812, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1788459, Length=253, Percent_Identity=28.4584980237154, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI1787820, Length=213, Percent_Identity=26.7605633802817, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1789208, Length=253, Percent_Identity=26.8774703557312, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787545, Length=272, Percent_Identity=27.2058823529412, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI2367175, Length=256, Percent_Identity=28.90625, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1786701, Length=194, Percent_Identity=30.4123711340206, Blast_Score=69, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17562908, Length=266, Percent_Identity=34.9624060150376, Blast_Score=122, Evalue=1e-28,
Organism=Caenorhabditis elegans, GI17560332, Length=269, Percent_Identity=36.0594795539033, Blast_Score=122, Evalue=2e-28,
Organism=Caenorhabditis elegans, GI17562906, Length=264, Percent_Identity=34.8484848484849, Blast_Score=121, Evalue=3e-28,
Organism=Caenorhabditis elegans, GI17562910, Length=261, Percent_Identity=33.7164750957854, Blast_Score=120, Evalue=5e-28,
Organism=Caenorhabditis elegans, GI17559104, Length=260, Percent_Identity=32.3076923076923, Blast_Score=119, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI17560220, Length=262, Percent_Identity=33.969465648855, Blast_Score=118, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI17561402, Length=250, Percent_Identity=33.2, Blast_Score=117, Evalue=6e-27,
Organism=Caenorhabditis elegans, GI17563726, Length=263, Percent_Identity=33.0798479087452, Blast_Score=115, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI17531453, Length=262, Percent_Identity=32.0610687022901, Blast_Score=115, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI71994604, Length=251, Percent_Identity=33.0677290836653, Blast_Score=115, Evalue=3e-26,
Organism=Caenorhabditis elegans, GI17560150, Length=262, Percent_Identity=30.5343511450382, Blast_Score=110, Evalue=5e-25,
Organism=Caenorhabditis elegans, GI17544670, Length=265, Percent_Identity=30.188679245283, Blast_Score=110, Evalue=6e-25,
Organism=Caenorhabditis elegans, GI72000259, Length=264, Percent_Identity=32.1969696969697, Blast_Score=110, Evalue=9e-25,
Organism=Caenorhabditis elegans, GI17565030, Length=272, Percent_Identity=32.7205882352941, Blast_Score=109, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI71994600, Length=249, Percent_Identity=31.7269076305221, Blast_Score=108, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI193204405, Length=268, Percent_Identity=32.089552238806, Blast_Score=107, Evalue=6e-24,
Organism=Caenorhabditis elegans, GI17538480, Length=272, Percent_Identity=32.3529411764706, Blast_Score=105, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17562990, Length=261, Percent_Identity=32.183908045977, Blast_Score=104, Evalue=5e-23,
Organism=Caenorhabditis elegans, GI17551412, Length=269, Percent_Identity=30.1115241635688, Blast_Score=103, Evalue=6e-23,
Organism=Caenorhabditis elegans, GI17562904, Length=261, Percent_Identity=30.6513409961686, Blast_Score=102, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17560676, Length=254, Percent_Identity=31.1023622047244, Blast_Score=100, Evalue=9e-22,
Organism=Caenorhabditis elegans, GI17538486, Length=266, Percent_Identity=30.0751879699248, Blast_Score=99, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI25147288, Length=263, Percent_Identity=30.4182509505703, Blast_Score=96, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI115534694, Length=256, Percent_Identity=32.8125, Blast_Score=91, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI17555706, Length=252, Percent_Identity=32.5396825396825, Blast_Score=84, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI17561272, Length=256, Percent_Identity=32.8125, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17536025, Length=257, Percent_Identity=30.3501945525292, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI17507613, Length=213, Percent_Identity=29.1079812206573, Blast_Score=74, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI32563809, Length=213, Percent_Identity=29.1079812206573, Blast_Score=74, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI17508895, Length=199, Percent_Identity=26.1306532663317, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17508651, Length=254, Percent_Identity=26.7716535433071, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17538182, Length=256, Percent_Identity=29.296875, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI71982365, Length=202, Percent_Identity=28.2178217821782, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17568967, Length=236, Percent_Identity=26.271186440678, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17536651, Length=258, Percent_Identity=27.5193798449612, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17567345, Length=203, Percent_Identity=26.6009852216749, Blast_Score=64, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17564282, Length=191, Percent_Identity=27.7486910994764, Blast_Score=64, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6324126, Length=251, Percent_Identity=30.2788844621514, Blast_Score=94, Evalue=2e-20,
Organism=Saccharomyces cerevisiae, GI6322226, Length=190, Percent_Identity=33.1578947368421, Blast_Score=86, Evalue=4e-18,
Organism=Saccharomyces cerevisiae, GI6322227, Length=197, Percent_Identity=29.4416243654822, Blast_Score=77, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6322067, Length=194, Percent_Identity=30.9278350515464, Blast_Score=75, Evalue=9e-15,
Organism=Saccharomyces cerevisiae, GI6322861, Length=191, Percent_Identity=31.413612565445, Blast_Score=74, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6323882, Length=196, Percent_Identity=28.0612244897959, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI23397609, Length=245, Percent_Identity=36.3265306122449, Blast_Score=123, Evalue=9e-29,
Organism=Drosophila melanogaster, GI24644339, Length=251, Percent_Identity=32.6693227091633, Blast_Score=119, Evalue=2e-27,
Organism=Drosophila melanogaster, GI28571526, Length=256, Percent_Identity=33.203125, Blast_Score=118, Evalue=4e-27,
Organism=Drosophila melanogaster, GI21357041, Length=251, Percent_Identity=32.6693227091633, Blast_Score=112, Evalue=2e-25,
Organism=Drosophila melanogaster, GI21355319, Length=251, Percent_Identity=33.4661354581673, Blast_Score=112, Evalue=3e-25,
Organism=Drosophila melanogaster, GI24643142, Length=253, Percent_Identity=30.0395256916996, Blast_Score=112, Evalue=3e-25,
Organism=Drosophila melanogaster, GI24639444, Length=249, Percent_Identity=32.5301204819277, Blast_Score=102, Evalue=2e-22,
Organism=Drosophila melanogaster, GI24644337, Length=252, Percent_Identity=30.952380952381, Blast_Score=90, Evalue=2e-18,
Organism=Drosophila melanogaster, GI21358495, Length=200, Percent_Identity=34, Blast_Score=88, Evalue=6e-18,
Organism=Drosophila melanogaster, GI21355631, Length=173, Percent_Identity=30.0578034682081, Blast_Score=78, Evalue=5e-15,
Organism=Drosophila melanogaster, GI21356301, Length=197, Percent_Identity=30.9644670050761, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI17737361, Length=255, Percent_Identity=29.0196078431373, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24663911, Length=198, Percent_Identity=28.7878787878788, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24581726, Length=249, Percent_Identity=25.3012048192771, Blast_Score=71, Evalue=8e-13,
Organism=Drosophila melanogaster, GI24649181, Length=193, Percent_Identity=29.0155440414508, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI221331218, Length=197, Percent_Identity=30.9644670050761, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24665243, Length=197, Percent_Identity=30.9644670050761, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI221331216, Length=198, Percent_Identity=31.3131313131313, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24665247, Length=198, Percent_Identity=31.3131313131313, Blast_Score=64, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: =1.1.1.47 [H]

Molecular weight: Translated: 25465; Mature: 25334

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MTSSLSGKVAVVTGASSGIGHAIAQRFLAEGAKVAVFARNAAALADLAKGREDSVLAVTG
CCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCCEEEEEC
DVTCAADLERLVAETVKRFGGVDMVIPNAGIAKVVPFEQSDAAAIDHQFAVNFTGAVQTV
CCCHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEECCCCCCCHHHCCEEEEEEHHHHHHH
RGFLPHIRQGGSVLFVTTFLTQVGFPGLAIYSASKAALKSFSQTLAAELAPKGIRVNSVA
HHHHHHHHCCCCEEEHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCEEECCCC
PGPIGTPIWGSIGLPADVLQAVATQVTARLMPGAFGEPGDIAATAAFLCSDQAKNIWGQE
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCE
IVVDGGYTIG
EEEECCEECC
>Mature Secondary Structure 
TSSLSGKVAVVTGASSGIGHAIAQRFLAEGAKVAVFARNAAALADLAKGREDSVLAVTG
CCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCCEEEEEC
DVTCAADLERLVAETVKRFGGVDMVIPNAGIAKVVPFEQSDAAAIDHQFAVNFTGAVQTV
CCCHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEECCCCCCCHHHCCEEEEEEHHHHHHH
RGFLPHIRQGGSVLFVTTFLTQVGFPGLAIYSASKAALKSFSQTLAAELAPKGIRVNSVA
HHHHHHHHCCCCEEEHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCEEECCCC
PGPIGTPIWGSIGLPADVLQAVATQVTARLMPGAFGEPGDIAATAAFLCSDQAKNIWGQE
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCE
IVVDGGYTIG
EEEECCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA