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The map label for this gene is fliN [H]

Identifier: 83309599

GI number: 83309599

Start: 535084

End: 535410

Strand: Reverse

Name: fliN [H]

Synonym: amb0500

Alternate gene names: 83309599

Gene position: 535410-535084 (Counterclockwise)

Preceding gene: 83309600

Following gene: 83309598

Centisome position: 10.78

GC content: 63.3

Gene sequence:

>327_bases
ATGCCCGACTTCGAACTCAACGATTTCAAGCCCGAGGTGGAGGAGCAGGGACGGGGCGACGTCCCGGACATGCCTCGGTC
GGCCCGCGATCTCGAAGCCGTCTACGATATTCCGGTGCAGGTATCGGCCGTGCTGGGCAAGGCCACCATGCAGGTCAACC
AGTTGCTGAAGCTGGGACGCGGCGCGGTCGTGGAACTGGACCGCAAAGTGGGCGAGGCCATCGACATCTACGTCAACAAC
CGCCTGGTGGCGCGTGGCGAAGTGGTGGTGGTCGAGGATCGCCTGGGCGTGACCATGACCGAAATCATCAAGACCGACCG
GGCCTAA

Upstream 100 bases:

>100_bases
GGAACGCGATCAGGTTCGTCTGATCGCCGATATCGAGACGGCGGTGAACCGGGCCCTGGCGCTGCCCGAAGGCCGCCCGG
AAGAGTAACAGGAGGATTCC

Downstream 100 bases:

>100_bases
GGGTCCTGACGGCGGGAGAGGGATGACATGCGACTTCTGATCATCGGCACGCTCGACGGCCAGATCGGCGCCGCCAGCCA
GATCGCCATGGCGCGGGGCG

Product: flagellar motor switch protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 108; Mature: 107

Protein sequence:

>108_residues
MPDFELNDFKPEVEEQGRGDVPDMPRSARDLEAVYDIPVQVSAVLGKATMQVNQLLKLGRGAVVELDRKVGEAIDIYVNN
RLVARGEVVVVEDRLGVTMTEIIKTDRA

Sequences:

>Translated_108_residues
MPDFELNDFKPEVEEQGRGDVPDMPRSARDLEAVYDIPVQVSAVLGKATMQVNQLLKLGRGAVVELDRKVGEAIDIYVNN
RLVARGEVVVVEDRLGVTMTEIIKTDRA
>Mature_107_residues
PDFELNDFKPEVEEQGRGDVPDMPRSARDLEAVYDIPVQVSAVLGKATMQVNQLLKLGRGAVVELDRKVGEAIDIYVNNR
LVARGEVVVVEDRLGVTMTEIIKTDRA

Specific function: FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the mot

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side. Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

Organism=Escherichia coli, GI1788256, Length=90, Percent_Identity=43.3333333333333, Blast_Score=74, Evalue=2e-15,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012826
- InterPro:   IPR001172
- InterPro:   IPR001543 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 11980; Mature: 11849

Theoretical pI: Translated: 4.39; Mature: 4.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDFELNDFKPEVEEQGRGDVPDMPRSARDLEAVYDIPVQVSAVLGKATMQVNQLLKLGR
CCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC
GAVVELDRKVGEAIDIYVNNRLVARGEVVVVEDRLGVTMTEIIKTDRA
CCEEEECHHCCCEEEEEECCEEEECCCEEEEECCCCCHHHHHHHCCCC
>Mature Secondary Structure 
PDFELNDFKPEVEEQGRGDVPDMPRSARDLEAVYDIPVQVSAVLGKATMQVNQLLKLGR
CCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC
GAVVELDRKVGEAIDIYVNNRLVARGEVVVVEDRLGVTMTEIIKTDRA
CCEEEECHHCCCEEEEEECCEEEECCCEEEEECCCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8002583; 11259647; 2315326; 1732219 [H]