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The map label for this gene is oppB2 [H]

Identifier: 82750973

GI number: 82750973

Start: 1352115

End: 1353101

Strand: Reverse

Name: oppB2 [H]

Synonym: SAB1237c

Alternate gene names: 82750973

Gene position: 1353101-1352115 (Counterclockwise)

Preceding gene: 82750974

Following gene: 82750972

Centisome position: 49.34

GC content: 30.9

Gene sequence:

>987_bases
ATGTTCATAATAAAGTCTATGTTGTATAGACTGATGCAAATGATAGTTGTTTTATTTGTTATTTCTACACTTACATTCAT
TTTAATGAAATTATCACCAGGCAATCCTGTTGATAAAATATTACATCTTGATGTAGCACAAGTGTCGATGGAACAAATAA
ATGCAACCAAAGATAAATTGGGATTAAATGATTCTTTATTGGTACAGTGGTGGCATTGGATGAATCATTTATTACATTTT
AATTTAGGAAAAAGTTTTGAATCAAAAGAACCGGTAACACAGATATTATTCAACTATGCACCCATAACACTACTCATATC
TTTTTCAACATTAGTATTGTCGTTATGCATATCTATACCGCTCGGCATTATAGCAGCCAAACGATTTCATAAGTTATCTG
ACAAAGTGATTAGAGTGATCTCAACTCTATCAATTAGTTTACCAGCGTTCTTTATCGGTATTATTTTATTATTTATTGTC
ACAAATTTAATGAATATAGATAGCGTTATACTAAGTCAGTTTATATTACCTGTAATCACGCTATCTTTAGGTATGTGTGC
ATACATCATTCGTTTAGTGCGCTCTAATTTATTGATGTTATTGCAAAGTAATATCGTACAAGCATCAAGATTACGCGGTA
TGAATGAACGTTATATTTTAATTCATGATTTACTAAAACCAACAATTTTGCCGATTATCCCATTATTAGGGATTTCACTT
GGTAGTCTAATAGGTGGTACTGTAGTGATTGAAAATTTATTTGATATACCTGGTATTGGTTATCTATTAATGGATAGTAT
TAAATCTCGAGATTATCCTGTTATTCAAGGATGCGTGTTATTTATTGGCTTCTTCGTTGTTATTATTAATACGATTGCTG
ATTTATTAACGTTATTACTTGATCCGAAGCAGCGTTTACAATTAGGAAATCCAAAAAGCAAAGCCAATACACCATTGATA
TCAGAAAGTAGTGACCGTCATGCATAA

Upstream 100 bases:

>100_bases
TATAATGAACTTTGGTTCTTAATATGTAAGTTGCATATACATGCGCCATTCTCATGTAAAAAGAAAGTGTTAGTAACTTA
CACAAGGAGGGGGGACTATT

Downstream 100 bases:

>100_bases
AATATTTTCAAAGAATAACCTTATCTTTTTTGTATTCGGCGCATTTATATTTGTGATGATTGTACTACAATTCTTTGTCA
GTAGTGAAAATGCAACCAAA

Product: oligopeptide membrane permease

Products: Ni2; [Cytoplasm]; ADP; phosphate [C]

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MFIIKSMLYRLMQMIVVLFVISTLTFILMKLSPGNPVDKILHLDVAQVSMEQINATKDKLGLNDSLLVQWWHWMNHLLHF
NLGKSFESKEPVTQILFNYAPITLLISFSTLVLSLCISIPLGIIAAKRFHKLSDKVIRVISTLSISLPAFFIGIILLFIV
TNLMNIDSVILSQFILPVITLSLGMCAYIIRLVRSNLLMLLQSNIVQASRLRGMNERYILIHDLLKPTILPIIPLLGISL
GSLIGGTVVIENLFDIPGIGYLLMDSIKSRDYPVIQGCVLFIGFFVVIINTIADLLTLLLDPKQRLQLGNPKSKANTPLI
SESSDRHA

Sequences:

>Translated_328_residues
MFIIKSMLYRLMQMIVVLFVISTLTFILMKLSPGNPVDKILHLDVAQVSMEQINATKDKLGLNDSLLVQWWHWMNHLLHF
NLGKSFESKEPVTQILFNYAPITLLISFSTLVLSLCISIPLGIIAAKRFHKLSDKVIRVISTLSISLPAFFIGIILLFIV
TNLMNIDSVILSQFILPVITLSLGMCAYIIRLVRSNLLMLLQSNIVQASRLRGMNERYILIHDLLKPTILPIIPLLGISL
GSLIGGTVVIENLFDIPGIGYLLMDSIKSRDYPVIQGCVLFIGFFVVIINTIADLLTLLLDPKQRLQLGNPKSKANTPLI
SESSDRHA
>Mature_328_residues
MFIIKSMLYRLMQMIVVLFVISTLTFILMKLSPGNPVDKILHLDVAQVSMEQINATKDKLGLNDSLLVQWWHWMNHLLHF
NLGKSFESKEPVTQILFNYAPITLLISFSTLVLSLCISIPLGIIAAKRFHKLSDKVIRVISTLSISLPAFFIGIILLFIV
TNLMNIDSVILSQFILPVITLSLGMCAYIIRLVRSNLLMLLQSNIVQASRLRGMNERYILIHDLLKPTILPIIPLLGISL
GSLIGGTVVIENLFDIPGIGYLLMDSIKSRDYPVIQGCVLFIGFFVVIINTIADLLTLLLDPKQRLQLGNPKSKANTPLI
SESSDRHA

Specific function: Part of a transport system that may be involved in oligopeptide uptake. Probably responsible for the translocation of the substrate across the membrane. Important for S.aureus growth and survival during the infection process [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789888, Length=311, Percent_Identity=33.1189710610932, Blast_Score=177, Evalue=9e-46,
Organism=Escherichia coli, GI1787053, Length=303, Percent_Identity=29.042904290429, Blast_Score=166, Evalue=2e-42,
Organism=Escherichia coli, GI1787497, Length=312, Percent_Identity=27.8846153846154, Blast_Score=150, Evalue=2e-37,
Organism=Escherichia coli, GI1789965, Length=338, Percent_Identity=26.3313609467456, Blast_Score=143, Evalue=2e-35,
Organism=Escherichia coli, GI1787761, Length=327, Percent_Identity=29.9694189602446, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1787550, Length=273, Percent_Identity=28.5714285714286, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1788504, Length=361, Percent_Identity=24.0997229916898, Blast_Score=79, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 36716; Mature: 36716

Theoretical pI: Translated: 9.77; Mature: 9.77

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCHHHHCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure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CCHHHHCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Ni2; [Periplasm]; ATP; H2O [C]

Specific reaction: Ni2+ [Periplasm] + ATP + H2O = Ni2+ [Cytoplasm] + ADP + phosphate [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA