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The map label for this gene is oppC2 [H]

Identifier: 82750972

GI number: 82750972

Start: 1351292

End: 1352122

Strand: Reverse

Name: oppC2 [H]

Synonym: SAB1236c

Alternate gene names: 82750972

Gene position: 1352122-1351292 (Counterclockwise)

Preceding gene: 82750973

Following gene: 82750971

Centisome position: 49.3

GC content: 32.73

Gene sequence:

>831_bases
ATGCATAAAATATTTTCAAAGAATAACCTTATCTTTTTTGTATTCGGCGCATTTATATTTGTGATGATTGTACTACAATT
CTTTGTCAGTAGTGAAAATGCAACCAAAGTCAATTTATCTCAAACTTTTGAACCTATTAGTTGGTTGCATTTATTAGGGA
CTGATGATTATGGGAGAGATTTATTTACCCGAATTATTATCGGTGCACGTTCAACATTGTTTGTTACTGTTTTAACATTA
ATAGCTATCGTTGTCATAGGTGTTACACTAGGTCTATTTGCCGGATATAAAAAGGGGTGGATTGAACGATTAGTGTTAAG
GTTTATTGATGTTGGTCTAAGTATTCCAGAATTTATCATCGTGATTGCTTTAGCAAGCTTTTTCCAACCATCGTTATGGA
ATTTAGTTATTTCAATTACAATAATAAAATGGATGAATTACACAAGGTTGACTAGAAGTATAGTTAATAGCGAAATGAAT
AAGCCTTATATAAAAATGGCACAATTATTTCATGTACCTACAAGAACAATATTAATACGTCATTTAACACCTAAAATTAT
ACCGGCTATTATCGTTTTGATGGTCGTTGATTTCGGTAAAATCATTCTATATATAAGTTCACTATCATTTATTGGGTTAG
GTTCACAACCGCCAACACCAGAGTGGGGCGCTATGTTGCAACAAGGTCGTGATTTTATTTCGTCTCATCCAATTATGTTG
ATTGCACCTGCTTCAGTCATTGCTATAACTATTTTAATTTTTAATTTAACCGGTGATGCGCTAAGAGATAGATTGCTGAA
ACAACGAGGTGAATATGATGAGTCTCATTGA

Upstream 100 bases:

>100_bases
GATTTATTAACGTTATTACTTGATCCGAAGCAGCGTTTACAATTAGGAAATCCAAAAAGCAAAGCCAATACACCATTGAT
ATCAGAAAGTAGTGACCGTC

Downstream 100 bases:

>100_bases
TATACAAAATTTAACAATAAAGAATACTAGTGAGAAATCACTTATTAAAGGGATTGATTTGAAAATTTTTAGTCAACAGA
TTAATGCCTTGATTGGAGAG

Product: oligopeptide membrane permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 276

Protein sequence:

>276_residues
MHKIFSKNNLIFFVFGAFIFVMIVLQFFVSSENATKVNLSQTFEPISWLHLLGTDDYGRDLFTRIIIGARSTLFVTVLTL
IAIVVIGVTLGLFAGYKKGWIERLVLRFIDVGLSIPEFIIVIALASFFQPSLWNLVISITIIKWMNYTRLTRSIVNSEMN
KPYIKMAQLFHVPTRTILIRHLTPKIIPAIIVLMVVDFGKIILYISSLSFIGLGSQPPTPEWGAMLQQGRDFISSHPIML
IAPASVIAITILIFNLTGDALRDRLLKQRGEYDESH

Sequences:

>Translated_276_residues
MHKIFSKNNLIFFVFGAFIFVMIVLQFFVSSENATKVNLSQTFEPISWLHLLGTDDYGRDLFTRIIIGARSTLFVTVLTL
IAIVVIGVTLGLFAGYKKGWIERLVLRFIDVGLSIPEFIIVIALASFFQPSLWNLVISITIIKWMNYTRLTRSIVNSEMN
KPYIKMAQLFHVPTRTILIRHLTPKIIPAIIVLMVVDFGKIILYISSLSFIGLGSQPPTPEWGAMLQQGRDFISSHPIML
IAPASVIAITILIFNLTGDALRDRLLKQRGEYDESH
>Mature_276_residues
MHKIFSKNNLIFFVFGAFIFVMIVLQFFVSSENATKVNLSQTFEPISWLHLLGTDDYGRDLFTRIIIGARSTLFVTVLTL
IAIVVIGVTLGLFAGYKKGWIERLVLRFIDVGLSIPEFIIVIALASFFQPSLWNLVISITIIKWMNYTRLTRSIVNSEMN
KPYIKMAQLFHVPTRTILIRHLTPKIIPAIIVLMVVDFGKIILYISSLSFIGLGSQPPTPEWGAMLQQGRDFISSHPIML
IAPASVIAITILIFNLTGDALRDRLLKQRGEYDESH

Specific function: Part of a transport system that may be involved in oligopeptide uptake. Probably responsible for the translocation of the substrate across the membrane. Important for S.aureus growth and survival during the infection process [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787054, Length=216, Percent_Identity=37.5, Blast_Score=159, Evalue=3e-40,
Organism=Escherichia coli, GI1787760, Length=253, Percent_Identity=30.8300395256917, Blast_Score=151, Evalue=5e-38,
Organism=Escherichia coli, GI1789964, Length=228, Percent_Identity=37.280701754386, Blast_Score=142, Evalue=2e-35,
Organism=Escherichia coli, GI1789889, Length=216, Percent_Identity=31.9444444444444, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI1787498, Length=216, Percent_Identity=35.1851851851852, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1787549, Length=268, Percent_Identity=29.1044776119403, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1788505, Length=236, Percent_Identity=32.6271186440678, Blast_Score=104, Evalue=6e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31230; Mature: 31230

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHKIFSKNNLIFFVFGAFIFVMIVLQFFVSSENATKVNLSQTFEPISWLHLLGTDDYGRD
CCCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHCCCCCHHH
LFTRIIIGARSTLFVTVLTLIAIVVIGVTLGLFAGYKKGWIERLVLRFIDVGLSIPEFII
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
VIALASFFQPSLWNLVISITIIKWMNYTRLTRSIVNSEMNKPYIKMAQLFHVPTRTILIR
HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHH
HLTPKIIPAIIVLMVVDFGKIILYISSLSFIGLGSQPPTPEWGAMLQQGRDFISSHPIML
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHCCCEEE
IAPASVIAITILIFNLTGDALRDRLLKQRGEYDESH
EECHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MHKIFSKNNLIFFVFGAFIFVMIVLQFFVSSENATKVNLSQTFEPISWLHLLGTDDYGRD
CCCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHCCCCCHHH
LFTRIIIGARSTLFVTVLTLIAIVVIGVTLGLFAGYKKGWIERLVLRFIDVGLSIPEFII
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
VIALASFFQPSLWNLVISITIIKWMNYTRLTRSIVNSEMNKPYIKMAQLFHVPTRTILIR
HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHH
HLTPKIIPAIIVLMVVDFGKIILYISSLSFIGLGSQPPTPEWGAMLQQGRDFISSHPIML
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHCCCEEE
IAPASVIAITILIFNLTGDALRDRLLKQRGEYDESH
EECHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA