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The map label for this gene is ygcF [C]

Identifier: 82703824

GI number: 82703824

Start: 3112928

End: 3113632

Strand: Reverse

Name: ygcF [C]

Synonym: Nmul_A2711

Alternate gene names: 82703824

Gene position: 3113632-3112928 (Counterclockwise)

Preceding gene: 82703825

Following gene: 82703823

Centisome position: 97.78

GC content: 54.89

Gene sequence:

>705_bases
ATGGTTCAGATCCTGTCCCCGGATTTCCCACCTCTGTCCAGGAAGATTCCATCTTCCGCGGAAGGGGCAAGCTTGCGTGT
CAACGAGATCTTTCTATCTCTGCAGGGAGAAACCAGTCGTGTAGGGCTGCCGACTGTTTTCGTGCGGCTCACCGGTTGTC
CGCTGCGTTGCGGCTACTGTGATACTGCTTATGCGTTCCATGAGGGCGAGCGCCTCTCCCTTGCCGCTATTCTGATGGAG
GTGGCAAGGCATGGGGCTCGTCATGTTACCGTGACAGGGGGCGAACCTCTGGCTCAAAAAGAGTGCCTGGCTTTGCTTCG
ATTGCTGTGCGATGCGGGTTATTCGGTATCAATGGAAACCGGCGGGGCTCTGGATATATCCAAAGTGGATGCGCGCGTAT
CCAGAATCCTGGACCTCAAAACGCCTGGTTCCGGAGAGGTGGAAAAAAATCTCTGGAGCAACGTTCAGTACCTTACAAGC
CATGACGAGGTAAAGTTTGTGCTCTGTGACGAAGACGATTACCGGTGGGCGGTCGAGATGATGGGTAAGCATCGGTTGGA
CCATACTTGTCCTGTATTGTTTTCTCCCGTTCATGGCAAACTGGAGCCGACTGTCCTTGCGGAATGGATCTTAAGGGACC
GGTTGCCCGTGCGCATGCAGGTTCAGTTGCACAAATTGCTGTGGGGGGAGGGCCCCGGACGATAA

Upstream 100 bases:

>100_bases
GGCAGCGACGCAGCAGACAAAGCCAAACGGCGGTTAACCAGTATCAAATAGCGGCGTGTGCCGGCCAGGACATTTTCCTG
CCGGCTTCCGTCCCGTATAT

Downstream 100 bases:

>100_bases
CGGGTGCTAACGGGGTAAAATAGACCGCGTCGTGACTCGTTTTTTACAACTTTATGGTTAAGGCAGTCGTGCTGCTGTCA
GGAGGTCTGGACTCGGCCAC

Product: radical SAM family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MVQILSPDFPPLSRKIPSSAEGASLRVNEIFLSLQGETSRVGLPTVFVRLTGCPLRCGYCDTAYAFHEGERLSLAAILME
VARHGARHVTVTGGEPLAQKECLALLRLLCDAGYSVSMETGGALDISKVDARVSRILDLKTPGSGEVEKNLWSNVQYLTS
HDEVKFVLCDEDDYRWAVEMMGKHRLDHTCPVLFSPVHGKLEPTVLAEWILRDRLPVRMQVQLHKLLWGEGPGR

Sequences:

>Translated_234_residues
MVQILSPDFPPLSRKIPSSAEGASLRVNEIFLSLQGETSRVGLPTVFVRLTGCPLRCGYCDTAYAFHEGERLSLAAILME
VARHGARHVTVTGGEPLAQKECLALLRLLCDAGYSVSMETGGALDISKVDARVSRILDLKTPGSGEVEKNLWSNVQYLTS
HDEVKFVLCDEDDYRWAVEMMGKHRLDHTCPVLFSPVHGKLEPTVLAEWILRDRLPVRMQVQLHKLLWGEGPGR
>Mature_234_residues
MVQILSPDFPPLSRKIPSSAEGASLRVNEIFLSLQGETSRVGLPTVFVRLTGCPLRCGYCDTAYAFHEGERLSLAAILME
VARHGARHVTVTGGEPLAQKECLALLRLLCDAGYSVSMETGGALDISKVDARVSRILDLKTPGSGEVEKNLWSNVQYLTS
HDEVKFVLCDEDDYRWAVEMMGKHRLDHTCPVLFSPVHGKLEPTVLAEWILRDRLPVRMQVQLHKLLWGEGPGR

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

Organism=Escherichia coli, GI1789139, Length=122, Percent_Identity=36.0655737704918, Blast_Score=75, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 25977; Mature: 25977

Theoretical pI: Translated: 6.71; Mature: 6.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVQILSPDFPPLSRKIPSSAEGASLRVNEIFLSLQGETSRVGLPTVFVRLTGCPLRCGYC
CCEECCCCCCCHHCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCEEEEEECCCCEECCCC
DTAYAFHEGERLSLAAILMEVARHGARHVTVTGGEPLAQKECLALLRLLCDAGYSVSMET
CCHHHHCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECC
GGALDISKVDARVSRILDLKTPGSGEVEKNLWSNVQYLTSHDEVKFVLCDEDDYRWAVEM
CCCCCHHHHHHHHHHHEECCCCCCCCHHHHHHCCCCEEECCCCEEEEEECCCCCCHHHHH
MGKHRLDHTCPVLFSPVHGKLEPTVLAEWILRDRLPVRMQVQLHKLLWGEGPGR
HHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHCCCCCCC
>Mature Secondary Structure
MVQILSPDFPPLSRKIPSSAEGASLRVNEIFLSLQGETSRVGLPTVFVRLTGCPLRCGYC
CCEECCCCCCCHHCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCEEEEEECCCCEECCCC
DTAYAFHEGERLSLAAILMEVARHGARHVTVTGGEPLAQKECLALLRLLCDAGYSVSMET
CCHHHHCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECC
GGALDISKVDARVSRILDLKTPGSGEVEKNLWSNVQYLTSHDEVKFVLCDEDDYRWAVEM
CCCCCHHHHHHHHHHHEECCCCCCCCHHHHHHCCCCEEECCCCEEEEEECCCCCCHHHHH
MGKHRLDHTCPVLFSPVHGKLEPTVLAEWILRDRLPVRMQVQLHKLLWGEGPGR
HHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]