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The map label for this gene is ybeY [C]

Identifier: 82703810

GI number: 82703810

Start: 3101641

End: 3102210

Strand: Direct

Name: ybeY [C]

Synonym: Nmul_A2697

Alternate gene names: 82703810

Gene position: 3101641-3102210 (Clockwise)

Preceding gene: 82703809

Following gene: 82703811

Centisome position: 97.41

GC content: 53.86

Gene sequence:

>570_bases
ATGAAAGAAAGGAGTAGTTCCCCCGGCACTCCTGACAGCGGGAGGCGCGCCAGACCGAAACCGGCGAAATTGAAAATGAC
TGTCCAATATGCGACTTCAACACGCGAGCCGCTTCCTTCCAGAGCCTTGCTTCGTAAATGGGTCAAGGCGGCCCTGGCGC
ATGATGCGGAAATCGCATTACGCATCGTGGACGAAGAGGAAGGCCACCGCCTCAACCGGGACTTTCGCAATAAGGATTAT
GCAACCAATGTCCTGACCTTCGTTTACAGGGATGGGCAAATCCATCCTGACTCTCCGCTCGGGGAAAAGCGGGGTGCTTA
CCCTCTGACCGGCGATATCGTACTCTGTGCGCCGGTAGTGGAAAATGAAGCGGGTCAGCAGCAAAAGGATCTAATGGCGC
ATTATGCGCATCTGACGGTGCATGGAGTCCTGCATCTGCAGGGCTATGATCATCAGGAGGATGAGGATGCCAAAAACATG
GAGGAAACGGAAACCCGGATTCTAGCGTGGTTGGGATATGAGGATCCTTATGCAGGATATCAGCTGGCGGAAGCGGTTGA
TTGTGGATAA

Upstream 100 bases:

>100_bases
GTTCTTGAAAAAGTGCGGGGCATTGCCTTTACGCGGTTCGATGCAGAGGATGTGGTGCGGCATCCGCTGGTGCAAAGAAT
TGTCAATGCCTATGAGAAAT

Downstream 100 bases:

>100_bases
TGCGAGCACAGTTGATGGCTGACGGCAAGATTTCAATTGATTGGATTTTTATGGCTATGTTGACTTTTACAAATGGATGA
TCCTCCCCAACCTGGCTGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 189; Mature: 189

Protein sequence:

>189_residues
MKERSSSPGTPDSGRRARPKPAKLKMTVQYATSTREPLPSRALLRKWVKAALAHDAEIALRIVDEEEGHRLNRDFRNKDY
ATNVLTFVYRDGQIHPDSPLGEKRGAYPLTGDIVLCAPVVENEAGQQQKDLMAHYAHLTVHGVLHLQGYDHQEDEDAKNM
EETETRILAWLGYEDPYAGYQLAEAVDCG

Sequences:

>Translated_189_residues
MKERSSSPGTPDSGRRARPKPAKLKMTVQYATSTREPLPSRALLRKWVKAALAHDAEIALRIVDEEEGHRLNRDFRNKDY
ATNVLTFVYRDGQIHPDSPLGEKRGAYPLTGDIVLCAPVVENEAGQQQKDLMAHYAHLTVHGVLHLQGYDHQEDEDAKNM
EETETRILAWLGYEDPYAGYQLAEAVDCG
>Mature_189_residues
MKERSSSPGTPDSGRRARPKPAKLKMTVQYATSTREPLPSRALLRKWVKAALAHDAEIALRIVDEEEGHRLNRDFRNKDY
ATNVLTFVYRDGQIHPDSPLGEKRGAYPLTGDIVLCAPVVENEAGQQQKDLMAHYAHLTVHGVLHLQGYDHQEDEDAKNM
EETETRILAWLGYEDPYAGYQLAEAVDCG

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=159, Percent_Identity=41.5094339622642, Blast_Score=110, Evalue=5e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_NITMU (Q2Y5I7)

Other databases:

- EMBL:   CP000103
- RefSeq:   YP_413376.1
- ProteinModelPortal:   Q2Y5I7
- SMR:   Q2Y5I7
- STRING:   Q2Y5I7
- GeneID:   3786114
- GenomeReviews:   CP000103_GR
- KEGG:   nmu:Nmul_A2697
- eggNOG:   COG0319
- HOGENOM:   HBG734136
- OMA:   RWIRHAL
- PhylomeDB:   Q2Y5I7
- BioCyc:   NMUL323848:NMUL_A2697-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 21268; Mature: 21268

Theoretical pI: Translated: 6.09; Mature: 6.09

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKERSSSPGTPDSGRRARPKPAKLKMTVQYATSTREPLPSRALLRKWVKAALAHDAEIAL
CCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
RIVDEEEGHRLNRDFRNKDYATNVLTFVYRDGQIHPDSPLGEKRGAYPLTGDIVLCAPVV
EEECCCCCCCCCHHHCCCCHHHHEEEEEEECCEECCCCCCCCCCCCCCCCCCEEEEEEHH
ENEAGQQQKDLMAHYAHLTVHGVLHLQGYDHQEDEDAKNMEETETRILAWLGYEDPYAGY
CCCCCHHHHHHHHHHHHHEEEEEEEECCCCCCCCCHHHHHHHHHHHEEEEECCCCCCCCH
QLAEAVDCG
HHHHHHCCC
>Mature Secondary Structure
MKERSSSPGTPDSGRRARPKPAKLKMTVQYATSTREPLPSRALLRKWVKAALAHDAEIAL
CCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
RIVDEEEGHRLNRDFRNKDYATNVLTFVYRDGQIHPDSPLGEKRGAYPLTGDIVLCAPVV
EEECCCCCCCCCHHHCCCCHHHHEEEEEEECCEECCCCCCCCCCCCCCCCCCEEEEEEHH
ENEAGQQQKDLMAHYAHLTVHGVLHLQGYDHQEDEDAKNMEETETRILAWLGYEDPYAGY
CCCCCHHHHHHHHHHHHHEEEEEEEECCCCCCCCCHHHHHHHHHHHEEEEECCCCCCCCH
QLAEAVDCG
HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA