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The map label for this gene is secD [H]

Identifier: 82703542

GI number: 82703542

Start: 2764848

End: 2766692

Strand: Reverse

Name: secD [H]

Synonym: Nmul_A2427

Alternate gene names: 82703542

Gene position: 2766692-2764848 (Counterclockwise)

Preceding gene: 82703543

Following gene: 82703541

Centisome position: 86.89

GC content: 58.1

Gene sequence:

>1845_bases
ATGAACCGCTATCCTGCCTGGAAATACCTCTTTATCGCGGTTTCGATACTGCTTGGTCTGCTCTATACCCTCCCGAATTT
CTATGGAGAGTCGCCGGCGGTGCAGATTTCGCCCCTGAGGAATGCGGCCAAGGCTGATACCGGGTTGTTGAATCGCGTCG
AAGAGGCACTTAAAAAAGCCGATCTCCCTACTACCGGCATGTTTCTGGAGGGGGGCAGCATCAAGGTACGCTTTGCCGAT
ACCGATACGCAGATCAGGGCAAGGGACGCACTGCAGTCGCTGCTGGGCAATGGCTACATGGTGGCACTGAATCTCCTGCC
CAATTCTCCCCAGTGGCTGACCAGTATAGGCGCACTGCCGATGTATCTCGGGCTCGATCTCCGCGGTGGCGTCCATTTTC
TGCTGGAAGTGGATATGAAAGGCGCCCTCTCCAAAGCCCTTGACCGCTTCAGTTCCGATATCCGCGGCAGCTTGCGGGAG
AAAAAAATTCCCTATGCAGGCCTCGACAAGCGCGGCTCGCTGATCATCGTCAAATTCCGCAATGCAGAATCGCGCGCGCA
GGCAGAGGCGGAAATCAAAAAGAACTATCCTGACCTGGATTTACGGGAAGAGAATGTCAGCACCGAGTTCCATCTGGCGG
CCACGTTGAGGCCGGAGGCACAGAAGCGCATTCAGGACGCCGCCGTACAGCAGAACATCACGACCCTGCGCAATCGTGTC
AACGAGCTCGGTGTGGCTGAGCCTATCATTCAGCAGGCCGGAGCAGACCGGGTGGTAGTGCAACTGCCCGGTGTGCAGGA
TACCGCCAAAGCCAAGGATATTCTGGGGCGCACCGCGACACTCGAAGTCCGCATGGTTGACGAGGAACACGACCTCAGCG
CGGCACTGAGAGGGCAGATTCCCTTTGGCTCCGAGCTGTACAGCGAACGCGGAGGCGGGCCATTACTGGTAAAGAAACAG
GTAGTGCTGACAGGTGACCGGATCAACGATGCGCAGCCGGGCTTCGACAATAATAACCAGCCCGCGGTGCACCTCAACCT
GGACAACAGCGGAGCCCGCATTTTCCAGCAGCTTACCCGCGATAACGTCGGCAAGCGCATGGCCATTCTGCTGATCGAGA
AAAACCAGGCCGAAGTGATCACCGCGCCGGTGATCCGGGAAGAAATCGGCGGTGGAAGGGTGCAGATCAGCGGCCGCATG
ACTTCCGAGGAAGCGCGGGATGTGGCATTGCTGCTACGCGCGGGCGCGCTGGCTGCTCCCATGGATATCGTCGAGGAGCG
AACCGTAGGCCCGAGCCTGGGTGCGGAAAACATCGAGAGCGGATTTAACTCCACGCTCTATGGCTTTGCCGCCATCGCCG
TCTTCATGACCATCTATTATCTGGTATTCGGCTTCATCTCGGTATTGGCACTCGGGGTCAACCTGCTGCTGCTGGTCGGC
CTGCTTTCGATTCTGCAGGCAACGCTCACGCTGCCCGGCATGGCTGCTATTGCGCTTACCCTGGGGATGGCCATTGACGC
CAATGTGCTCATCAACGAACGCATACGCGATGAACTGAGAGAGGGCATGGCGCCGCAGGCGGCGATAAACGCTGGCTACG
AGCGTGCCTGGGCGACCATTCTCGATTCCAACATCACTACCCTGATTGCGGGTATCGCTTTGTTTGCATTCGGCTCGGGC
CCGATAAAGGGATTTGCAGTGGTGCTGTGCCTGGGTATCCTGACTTCTATGTTCAGCGCGGTGATGGTCTCGCGCGGATT
CGTCAATCTGGTATACGGCAGCCGCCGCAAACTGGAGCGGGTTTCCATTGGGCAGGTGTGGAAGCCTGTGACCAACAAGC
GCTGA

Upstream 100 bases:

>100_bases
GGGAACATTGAATACCATCGAAAAAGAATAATTGAAACTATTGTAAACGCCGTATGGCGCGGTCGCTGCACTCTCCTCCT
CCTCTGGCTACTCCGAAAAC

Downstream 100 bases:

>100_bases
CAGCGAAAAAAAAGCGTACCTTTGGAGAAAATAAGGGTCATCAATGGAATTTTTCAGGTTCAAGCGCGATATCCCTTTCA
TGAGCTGGGGGAAATATACG

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 614; Mature: 614

Protein sequence:

>614_residues
MNRYPAWKYLFIAVSILLGLLYTLPNFYGESPAVQISPLRNAAKADTGLLNRVEEALKKADLPTTGMFLEGGSIKVRFAD
TDTQIRARDALQSLLGNGYMVALNLLPNSPQWLTSIGALPMYLGLDLRGGVHFLLEVDMKGALSKALDRFSSDIRGSLRE
KKIPYAGLDKRGSLIIVKFRNAESRAQAEAEIKKNYPDLDLREENVSTEFHLAATLRPEAQKRIQDAAVQQNITTLRNRV
NELGVAEPIIQQAGADRVVVQLPGVQDTAKAKDILGRTATLEVRMVDEEHDLSAALRGQIPFGSELYSERGGGPLLVKKQ
VVLTGDRINDAQPGFDNNNQPAVHLNLDNSGARIFQQLTRDNVGKRMAILLIEKNQAEVITAPVIREEIGGGRVQISGRM
TSEEARDVALLLRAGALAAPMDIVEERTVGPSLGAENIESGFNSTLYGFAAIAVFMTIYYLVFGFISVLALGVNLLLLVG
LLSILQATLTLPGMAAIALTLGMAIDANVLINERIRDELREGMAPQAAINAGYERAWATILDSNITTLIAGIALFAFGSG
PIKGFAVVLCLGILTSMFSAVMVSRGFVNLVYGSRRKLERVSIGQVWKPVTNKR

Sequences:

>Translated_614_residues
MNRYPAWKYLFIAVSILLGLLYTLPNFYGESPAVQISPLRNAAKADTGLLNRVEEALKKADLPTTGMFLEGGSIKVRFAD
TDTQIRARDALQSLLGNGYMVALNLLPNSPQWLTSIGALPMYLGLDLRGGVHFLLEVDMKGALSKALDRFSSDIRGSLRE
KKIPYAGLDKRGSLIIVKFRNAESRAQAEAEIKKNYPDLDLREENVSTEFHLAATLRPEAQKRIQDAAVQQNITTLRNRV
NELGVAEPIIQQAGADRVVVQLPGVQDTAKAKDILGRTATLEVRMVDEEHDLSAALRGQIPFGSELYSERGGGPLLVKKQ
VVLTGDRINDAQPGFDNNNQPAVHLNLDNSGARIFQQLTRDNVGKRMAILLIEKNQAEVITAPVIREEIGGGRVQISGRM
TSEEARDVALLLRAGALAAPMDIVEERTVGPSLGAENIESGFNSTLYGFAAIAVFMTIYYLVFGFISVLALGVNLLLLVG
LLSILQATLTLPGMAAIALTLGMAIDANVLINERIRDELREGMAPQAAINAGYERAWATILDSNITTLIAGIALFAFGSG
PIKGFAVVLCLGILTSMFSAVMVSRGFVNLVYGSRRKLERVSIGQVWKPVTNKR
>Mature_614_residues
MNRYPAWKYLFIAVSILLGLLYTLPNFYGESPAVQISPLRNAAKADTGLLNRVEEALKKADLPTTGMFLEGGSIKVRFAD
TDTQIRARDALQSLLGNGYMVALNLLPNSPQWLTSIGALPMYLGLDLRGGVHFLLEVDMKGALSKALDRFSSDIRGSLRE
KKIPYAGLDKRGSLIIVKFRNAESRAQAEAEIKKNYPDLDLREENVSTEFHLAATLRPEAQKRIQDAAVQQNITTLRNRV
NELGVAEPIIQQAGADRVVVQLPGVQDTAKAKDILGRTATLEVRMVDEEHDLSAALRGQIPFGSELYSERGGGPLLVKKQ
VVLTGDRINDAQPGFDNNNQPAVHLNLDNSGARIFQQLTRDNVGKRMAILLIEKNQAEVITAPVIREEIGGGRVQISGRM
TSEEARDVALLLRAGALAAPMDIVEERTVGPSLGAENIESGFNSTLYGFAAIAVFMTIYYLVFGFISVLALGVNLLLLVG
LLSILQATLTLPGMAAIALTLGMAIDANVLINERIRDELREGMAPQAAINAGYERAWATILDSNITTLIAGIALFAFGSG
PIKGFAVVLCLGILTSMFSAVMVSRGFVNLVYGSRRKLERVSIGQVWKPVTNKR

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=620, Percent_Identity=47.4193548387097, Blast_Score=555, Evalue=1e-159,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 66750; Mature: 66750

Theoretical pI: Translated: 9.03; Mature: 9.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRYPAWKYLFIAVSILLGLLYTLPNFYGESPAVQISPLRNAAKADTGLLNRVEEALKKA
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHC
DLPTTGMFLEGGSIKVRFADTDTQIRARDALQSLLGNGYMVALNLLPNSPQWLTSIGALP
CCCCCCEEEECCEEEEEEECCCCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHCCCH
MYLGLDLRGGVHFLLEVDMKGALSKALDRFSSDIRGSLREKKIPYAGLDKRGSLIIVKFR
HHCCEECCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEC
NAESRAQAEAEIKKNYPDLDLREENVSTEFHLAATLRPEAQKRIQDAAVQQNITTLRNRV
CCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHH
NELGVAEPIIQQAGADRVVVQLPGVQDTAKAKDILGRTATLEVRMVDEEHDLSAALRGQI
HHCCCHHHHHHHCCCCEEEEEECCCCCHHHHHHHHCCCEEEEEEEECCCCCCHHHHCCCC
PFGSELYSERGGGPLLVKKQVVLTGDRINDAQPGFDNNNQPAVHLNLDNSGARIFQQLTR
CCCHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHH
DNVGKRMAILLIEKNQAEVITAPVIREEIGGGRVQISGRMTSEEARDVALLLRAGALAAP
HCCCCEEEEEEEECCCCCEEEHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCHHCC
MDIVEERTVGPSLGAENIESGFNSTLYGFAAIAVFMTIYYLVFGFISVLALGVNLLLLVG
HHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLSILQATLTLPGMAAIALTLGMAIDANVLINERIRDELREGMAPQAAINAGYERAWATI
HHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHH
LDSNITTLIAGIALFAFGSGPIKGFAVVLCLGILTSMFSAVMVSRGFVNLVYGSRRKLER
HHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHEEHHCCCHHHHH
VSIGQVWKPVTNKR
CCHHHHHCCCCCCC
>Mature Secondary Structure
MNRYPAWKYLFIAVSILLGLLYTLPNFYGESPAVQISPLRNAAKADTGLLNRVEEALKKA
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHC
DLPTTGMFLEGGSIKVRFADTDTQIRARDALQSLLGNGYMVALNLLPNSPQWLTSIGALP
CCCCCCEEEECCEEEEEEECCCCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHCCCH
MYLGLDLRGGVHFLLEVDMKGALSKALDRFSSDIRGSLREKKIPYAGLDKRGSLIIVKFR
HHCCEECCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEC
NAESRAQAEAEIKKNYPDLDLREENVSTEFHLAATLRPEAQKRIQDAAVQQNITTLRNRV
CCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHH
NELGVAEPIIQQAGADRVVVQLPGVQDTAKAKDILGRTATLEVRMVDEEHDLSAALRGQI
HHCCCHHHHHHHCCCCEEEEEECCCCCHHHHHHHHCCCEEEEEEEECCCCCCHHHHCCCC
PFGSELYSERGGGPLLVKKQVVLTGDRINDAQPGFDNNNQPAVHLNLDNSGARIFQQLTR
CCCHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHH
DNVGKRMAILLIEKNQAEVITAPVIREEIGGGRVQISGRMTSEEARDVALLLRAGALAAP
HCCCCEEEEEEEECCCCCEEEHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCHHCC
MDIVEERTVGPSLGAENIESGFNSTLYGFAAIAVFMTIYYLVFGFISVLALGVNLLLLVG
HHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLSILQATLTLPGMAAIALTLGMAIDANVLINERIRDELREGMAPQAAINAGYERAWATI
HHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHH
LDSNITTLIAGIALFAFGSGPIKGFAVVLCLGILTSMFSAVMVSRGFVNLVYGSRRKLER
HHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHEEHHCCCHHHHH
VSIGQVWKPVTNKR
CCHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]