| Definition | Nitrosospira multiformis ATCC 25196 chromosome, complete genome. |
|---|---|
| Accession | NC_007614 |
| Length | 3,184,243 |
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The map label for this gene is hbpA [H]
Identifier: 82703451
GI number: 82703451
Start: 2657292
End: 2659559
Strand: Reverse
Name: hbpA [H]
Synonym: Nmul_A2334
Alternate gene names: 82703451
Gene position: 2659559-2657292 (Counterclockwise)
Preceding gene: 82703453
Following gene: 82703450
Centisome position: 83.52
GC content: 54.23
Gene sequence:
>2268_bases GTGTTTACCCAATTTCTGAATAAGGCCCCAACCTTGCCAGCCACGCACCTCCTTCCCGCATTCCTTGCTGTTCTGGTGTG CGCCTGCAGCGGCAACCCGTGGAACAGTCCATATCCTGCCGCGGATGCGGAAAAAAATATACTTTATGCAGCTTTTGCCG AACGCCCCAAGCATCTGGACCCCGTGCAGTCCTACAGTTCCAATGAGATTCTTTTTACGGCGCAGATATATGAACCGCCG CTGCAATACCATTACCTGAAACGCCCCTACGAATTGATTCCCGCTACCGCGACGAAAATGCCGGAGGTGCATTATTTCGA TGAAAAAGGCGCGCGCCTGGGCGACAATGTGGACGCCGCTCAGATCGCCTTTACCGTTTATGAAATTTCAATCAAGTCCG GTATACGTTATCAACCTCATCCGGCCTTTGCCAGGGACTCACAGGGAAAGTTCCTTTATCACCGGCTTGGCGAGGAGGAC GTACGTGGCATTTACAAGTTGAGCGATTTTCCACAAACCGGCTCCCGGGAACTCACGGCTGCGGATTACGTTTTCCAGGT CAAGCGGCTGGCTCATCCCCGGCTGCACTCTCCCATTTTTGGCCTGATGTCCGATTACATCGTGGGCCTCAAGGAATATG CGGCGATGCTCGAGATGGCGGCCAAAGAGCAGTCCAGGGAGCAGGGGGAGCAGAGCGGAGGCGAGCAGGACGGCGAGGAT TACCTGGATCTTGCGCGTTACCCCCTGGAGGGGGCCGAAGTGGTGGACCGGTATACCTATCGCATCAAGATCAAGGGCAA ATATCCCCAGTTCAGGTACTGGCTCACCATGCCTTTTTTCGCTCCTATTCCTTGGGAGGCTGAGCGCTTCTACAGTCAGA AAGGATTGGCAGAAAAAAATATCAACCTCGACTGGTATCCCGTCGGGACCGGCCCTTATATGCTGTCGGAAAATAACCCC AATCGGACAATGGTCCTGGAAAGGAATCCCAATTTTCATGGCGAAACCTATCCTGCCGATGGAATGCCAGGAGATGTGGA AGCGGGGTTGCTGAAAGATGCGGGCAAGCCCCTGCCTTTTATAGAAAAGATCGTATATAGCCGGGAGAAGGAAAGCATTC CGCGCTGGAACAAGTTTCTGCAGGGTTACTACGATTCATCGAATATCGGTTCCGACAGTTTCGACCAGGCCGTGCAGTTG ACAGGACAGGGAGAAGCCACCGTAACCGAAGCCATGAAGGAGCAGGGCATTCGGCTGGAAACGGCTGTTGCGGCTTCCAC AAACTATGTCGGTTTCAACATGCTCGACCCGGTCGTCGGCGGGGTGGGGAAGCATGGCCGCGAATCGGCCAGGAAGTTGC GCCAGGCGATTTCCATTGCGGTGGATTATGAGGAGTATGTCTCCATATTTGCCAACGGGCGTGGGATTCCCGCGCAAGGT CCGATTGCTCCCGGCATTGCCGGTCACCGGGAGGGTAAGGAAGGCATCAACCCGGTTGTCTATGAGTGGGTAAACGGACG GTCCCGCCGCAAATCCGTCGAAGTGGCCAAGGCATTACTGGCAGAGGCAGGCTATCCCAACGGTATCAGCGCGAAAACCG GCGCGCCCCTCGTACTTTATTTCGATGTCACGGCTCGCGGCGCGGAGGATAAATCCAGTCTCGACTGGATGCGCAAGCAA TTTCAGAAACTCAACATCCAGTTGGTGGTGCGCAGCACGGACTACAACCGCTTTCAGGACAAGATCCGCAAGGGTAATGC CCAGATTTTCGAGTGGGGCTGGAACGCCGACTATCCCGATCCGGAGAATTTCCTGTTCCTGTTACATGGCCCGCAGCAGA AGGTAGACCATGAAGGCGAGAACGCTTCCAATTACTCCAATTCCGAATATAACCGGTTGTTCGAGCAAATGAAGAATATG GAGAACGGTCCCGCTCGCCAGAAAATCATCGATAGAATGGTCAATATCCTGCGTCATGACGCACCCTGGCTATGGGGCTA TCATCCCAAGGATTATGGCCTGTATCACTCATGGTATGGCAACGTAAAGCCGAACAGGATGTCAAACAACAATGCCAAAT ATCTGCGCATTGATGGCGTTTTGCGTGAGCAGAAGCGGCGTGAATGGAATGAACCAGTAGTCTGGCCGATGGTTGTAGGA CTGGCCGTGCTTGCCGGAAGTCTGCTTCCCGCCGTGCTTGTTTACCGGCGTAGGGAACGAGGGAGAGGAATATCGGATGT TGCGCTGAAAATGGAAGCGCAGGGGTAG
Upstream 100 bases:
>100_bases CCGGCATTATAGCTTCAACTGCTGCATGCTTGTAGAATCACACGGTTTGCCGAAAATCCGCCCATGAGGAATCAAGAATT GCCGCTGTATCATCAAGCCT
Downstream 100 bases:
>100_bases GGATGACTGATGCTTAATTACATCATCCGGCGCATCCTGTATGCGATTCCCATCCTGGTTGGCGTAAACCTGATTACTTT CACCTTGTTTTTCGTCGTAA
Product: extracellular solute-binding protein
Products: NA
Alternate protein names: Hemin-binding lipoprotein [H]
Number of amino acids: Translated: 755; Mature: 755
Protein sequence:
>755_residues MFTQFLNKAPTLPATHLLPAFLAVLVCACSGNPWNSPYPAADAEKNILYAAFAERPKHLDPVQSYSSNEILFTAQIYEPP LQYHYLKRPYELIPATATKMPEVHYFDEKGARLGDNVDAAQIAFTVYEISIKSGIRYQPHPAFARDSQGKFLYHRLGEED VRGIYKLSDFPQTGSRELTAADYVFQVKRLAHPRLHSPIFGLMSDYIVGLKEYAAMLEMAAKEQSREQGEQSGGEQDGED YLDLARYPLEGAEVVDRYTYRIKIKGKYPQFRYWLTMPFFAPIPWEAERFYSQKGLAEKNINLDWYPVGTGPYMLSENNP NRTMVLERNPNFHGETYPADGMPGDVEAGLLKDAGKPLPFIEKIVYSREKESIPRWNKFLQGYYDSSNIGSDSFDQAVQL TGQGEATVTEAMKEQGIRLETAVAASTNYVGFNMLDPVVGGVGKHGRESARKLRQAISIAVDYEEYVSIFANGRGIPAQG PIAPGIAGHREGKEGINPVVYEWVNGRSRRKSVEVAKALLAEAGYPNGISAKTGAPLVLYFDVTARGAEDKSSLDWMRKQ FQKLNIQLVVRSTDYNRFQDKIRKGNAQIFEWGWNADYPDPENFLFLLHGPQQKVDHEGENASNYSNSEYNRLFEQMKNM ENGPARQKIIDRMVNILRHDAPWLWGYHPKDYGLYHSWYGNVKPNRMSNNNAKYLRIDGVLREQKRREWNEPVVWPMVVG LAVLAGSLLPAVLVYRRRERGRGISDVALKMEAQG
Sequences:
>Translated_755_residues MFTQFLNKAPTLPATHLLPAFLAVLVCACSGNPWNSPYPAADAEKNILYAAFAERPKHLDPVQSYSSNEILFTAQIYEPP LQYHYLKRPYELIPATATKMPEVHYFDEKGARLGDNVDAAQIAFTVYEISIKSGIRYQPHPAFARDSQGKFLYHRLGEED VRGIYKLSDFPQTGSRELTAADYVFQVKRLAHPRLHSPIFGLMSDYIVGLKEYAAMLEMAAKEQSREQGEQSGGEQDGED YLDLARYPLEGAEVVDRYTYRIKIKGKYPQFRYWLTMPFFAPIPWEAERFYSQKGLAEKNINLDWYPVGTGPYMLSENNP NRTMVLERNPNFHGETYPADGMPGDVEAGLLKDAGKPLPFIEKIVYSREKESIPRWNKFLQGYYDSSNIGSDSFDQAVQL TGQGEATVTEAMKEQGIRLETAVAASTNYVGFNMLDPVVGGVGKHGRESARKLRQAISIAVDYEEYVSIFANGRGIPAQG PIAPGIAGHREGKEGINPVVYEWVNGRSRRKSVEVAKALLAEAGYPNGISAKTGAPLVLYFDVTARGAEDKSSLDWMRKQ FQKLNIQLVVRSTDYNRFQDKIRKGNAQIFEWGWNADYPDPENFLFLLHGPQQKVDHEGENASNYSNSEYNRLFEQMKNM ENGPARQKIIDRMVNILRHDAPWLWGYHPKDYGLYHSWYGNVKPNRMSNNNAKYLRIDGVLREQKRREWNEPVVWPMVVG LAVLAGSLLPAVLVYRRRERGRGISDVALKMEAQG >Mature_755_residues MFTQFLNKAPTLPATHLLPAFLAVLVCACSGNPWNSPYPAADAEKNILYAAFAERPKHLDPVQSYSSNEILFTAQIYEPP LQYHYLKRPYELIPATATKMPEVHYFDEKGARLGDNVDAAQIAFTVYEISIKSGIRYQPHPAFARDSQGKFLYHRLGEED VRGIYKLSDFPQTGSRELTAADYVFQVKRLAHPRLHSPIFGLMSDYIVGLKEYAAMLEMAAKEQSREQGEQSGGEQDGED YLDLARYPLEGAEVVDRYTYRIKIKGKYPQFRYWLTMPFFAPIPWEAERFYSQKGLAEKNINLDWYPVGTGPYMLSENNP NRTMVLERNPNFHGETYPADGMPGDVEAGLLKDAGKPLPFIEKIVYSREKESIPRWNKFLQGYYDSSNIGSDSFDQAVQL TGQGEATVTEAMKEQGIRLETAVAASTNYVGFNMLDPVVGGVGKHGRESARKLRQAISIAVDYEEYVSIFANGRGIPAQG PIAPGIAGHREGKEGINPVVYEWVNGRSRRKSVEVAKALLAEAGYPNGISAKTGAPLVLYFDVTARGAEDKSSLDWMRKQ FQKLNIQLVVRSTDYNRFQDKIRKGNAQIFEWGWNADYPDPENFLFLLHGPQQKVDHEGENASNYSNSEYNRLFEQMKNM ENGPARQKIIDRMVNILRHDAPWLWGYHPKDYGLYHSWYGNVKPNRMSNNNAKYLRIDGVLREQKRREWNEPVVWPMVVG LAVLAGSLLPAVLVYRRRERGRGISDVALKMEAQG
Specific function: Important role in heme acquisition or metabolism [H]
COG id: COG4166
COG function: function code E; ABC-type oligopeptide transport system, periplasmic component
Gene ontology:
Cell location: Cell inner membrane; Lipid-anchor [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 5 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000914 [H]
Pfam domain/function: PF00496 SBP_bac_5 [H]
EC number: NA
Molecular weight: Translated: 85627; Mature: 85627
Theoretical pI: Translated: 7.53; Mature: 7.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFTQFLNKAPTLPATHLLPAFLAVLVCACSGNPWNSPYPAADAEKNILYAAFAERPKHLD CCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEHHCCCCCCC PVQSYSSNEILFTAQIYEPPLQYHYLKRPYELIPATATKMPEVHYFDEKGARLGDNVDAA HHHCCCCCCEEEEEEECCCCHHHHHHCCCHHHCCCHHHCCCCEEEECCCCCCCCCCCCHH QIAFTVYEISIKSGIRYQPHPAFARDSQGKFLYHRLGEEDVRGIYKLSDFPQTGSRELTA HEEEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHCCCCCCCCCCCHH ADYVFQVKRLAHPRLHSPIFGLMSDYIVGLKEYAAMLEMAAKEQSREQGEQSGGEQDGED HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH YLDLARYPLEGAEVVDRYTYRIKIKGKYPQFRYWLTMPFFAPIPWEAERFYSQKGLAEKN HHHHHHCCCCHHHHHEEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCC INLDWYPVGTGPYMLSENNPNRTMVLERNPNFHGETYPADGMPGDVEAGLLKDAGKPLPF CCEEEEECCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHH IEKIVYSREKESIPRWNKFLQGYYDSSNIGSDSFDQAVQLTGQGEATVTEAMKEQGIRLE HHHHHHHCCHHCCHHHHHHHHCCCCCCCCCCCCHHHHEEECCCCCHHHHHHHHHCCCEEE TAVAASTNYVGFNMLDPVVGGVGKHGRESARKLRQAISIAVDYEEYVSIFANGRGIPAQG EEEECCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCC PIAPGIAGHREGKEGINPVVYEWVNGRSRRKSVEVAKALLAEAGYPNGISAKTGAPLVLY CCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEE FDVTARGAEDKSSLDWMRKQFQKLNIQLVVRSTDYNRFQDKIRKGNAQIFEWGWNADYPD EEEECCCCCCHHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHHCCCCEEEEECCCCCCCC PENFLFLLHGPQQKVDHEGENASNYSNSEYNRLFEQMKNMENGPARQKIIDRMVNILRHD CCCEEEEEECCHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC APWLWGYHPKDYGLYHSWYGNVKPNRMSNNNAKYLRIDGVLREQKRREWNEPVVWPMVVG CCCEECCCCCCCCCEEHHCCCCCCCCCCCCCCCEEEECHHHHHHHHHHCCCCCHHHHHHH LAVLAGSLLPAVLVYRRRERGRGISDVALKMEAQG HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC >Mature Secondary Structure MFTQFLNKAPTLPATHLLPAFLAVLVCACSGNPWNSPYPAADAEKNILYAAFAERPKHLD CCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEHHCCCCCCC PVQSYSSNEILFTAQIYEPPLQYHYLKRPYELIPATATKMPEVHYFDEKGARLGDNVDAA HHHCCCCCCEEEEEEECCCCHHHHHHCCCHHHCCCHHHCCCCEEEECCCCCCCCCCCCHH QIAFTVYEISIKSGIRYQPHPAFARDSQGKFLYHRLGEEDVRGIYKLSDFPQTGSRELTA HEEEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHCCCCCCCCCCCHH ADYVFQVKRLAHPRLHSPIFGLMSDYIVGLKEYAAMLEMAAKEQSREQGEQSGGEQDGED HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH YLDLARYPLEGAEVVDRYTYRIKIKGKYPQFRYWLTMPFFAPIPWEAERFYSQKGLAEKN HHHHHHCCCCHHHHHEEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCC INLDWYPVGTGPYMLSENNPNRTMVLERNPNFHGETYPADGMPGDVEAGLLKDAGKPLPF CCEEEEECCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHH IEKIVYSREKESIPRWNKFLQGYYDSSNIGSDSFDQAVQLTGQGEATVTEAMKEQGIRLE HHHHHHHCCHHCCHHHHHHHHCCCCCCCCCCCCHHHHEEECCCCCHHHHHHHHHCCCEEE TAVAASTNYVGFNMLDPVVGGVGKHGRESARKLRQAISIAVDYEEYVSIFANGRGIPAQG EEEECCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCC PIAPGIAGHREGKEGINPVVYEWVNGRSRRKSVEVAKALLAEAGYPNGISAKTGAPLVLY CCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEE FDVTARGAEDKSSLDWMRKQFQKLNIQLVVRSTDYNRFQDKIRKGNAQIFEWGWNADYPD EEEECCCCCCHHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHHCCCCEEEEECCCCCCCC PENFLFLLHGPQQKVDHEGENASNYSNSEYNRLFEQMKNMENGPARQKIIDRMVNILRHD CCCEEEEEECCHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC APWLWGYHPKDYGLYHSWYGNVKPNRMSNNNAKYLRIDGVLREQKRREWNEPVVWPMVVG CCCEECCCCCCCCCEEHHCCCCCCCCCCCCCCCEEEECHHHHHHHHHHCCCCCHHHHHHH LAVLAGSLLPAVLVYRRRERGRGISDVALKMEAQG HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1339409; 7542800; 2041470 [H]