Click here to switch to the map view.

The map label for this gene is sspB [H]

Identifier: 82702130

GI number: 82702130

Start: 1162827

End: 1163255

Strand: Reverse

Name: sspB [H]

Synonym: Nmul_A1001

Alternate gene names: 82702130

Gene position: 1163255-1162827 (Counterclockwise)

Preceding gene: 82702131

Following gene: 82702129

Centisome position: 36.53

GC content: 53.38

Gene sequence:

>429_bases
ATGAGAGAGCTTTCCACCAAGCCTTATCTGATTCGCGCCATTTACGAATGGTGCTCGGATTGCGGTTATACGCCTTACAT
CTCGGTTAAAGTGGATGACAACACCCGCGTACCGGATGAATATGTGAAGGATGGCGAGATTATTCTCAACATAAGCCACG
ATGCTGCTCACCACCTTACGCTTGGAAATGAAGTGATACAGTTCTCGGCGCGGTTTGCCGGCGTCTCGCGTGAAATCTCC
ATCCCCCTGGCGACAGTCCAGGGAATATTTGCCAAAGAAACCGCACGCGGTATGCTTTTTCCAGCCGAGGTAGAACCGGA
TGCCCCCCAGGATGAGGCTGCCGGAAAAGAAGCCGATGAGTCCCAATCCTCATCGGATCGGCCCCCTGCCAGGGCAACCA
AGAACCGTCGGCTTCAAGTGGTCAAGTAA

Upstream 100 bases:

>100_bases
TACCCAAGCAAGCCGCGCCCCTGCTGAAATTTGCCGAGCGCCTGTTCAGCAGACCGGCATTCATCGATGCGCTCACAGCC
TCTGAAAAGGCCATGCGCAA

Downstream 100 bases:

>100_bases
GGGCGAGCTGTCACCCGTATCAGCGGTTTGCTCCCCTCCTTTCCAGTCTCTATAATTGCATCCACGCCGGCATAGCTCAG
TTGGTAGAGCAGCTGATTTG

Product: ClpXP protease specificity-enhancing factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 142

Protein sequence:

>142_residues
MRELSTKPYLIRAIYEWCSDCGYTPYISVKVDDNTRVPDEYVKDGEIILNISHDAAHHLTLGNEVIQFSARFAGVSREIS
IPLATVQGIFAKETARGMLFPAEVEPDAPQDEAAGKEADESQSSSDRPPARATKNRRLQVVK

Sequences:

>Translated_142_residues
MRELSTKPYLIRAIYEWCSDCGYTPYISVKVDDNTRVPDEYVKDGEIILNISHDAAHHLTLGNEVIQFSARFAGVSREIS
IPLATVQGIFAKETARGMLFPAEVEPDAPQDEAAGKEADESQSSSDRPPARATKNRRLQVVK
>Mature_142_residues
MRELSTKPYLIRAIYEWCSDCGYTPYISVKVDDNTRVPDEYVKDGEIILNISHDAAHHLTLGNEVIQFSARFAGVSREIS
IPLATVQGIFAKETARGMLFPAEVEPDAPQDEAAGKEADESQSSSDRPPARATKNRRLQVVK

Specific function: Seems to act in concert with sspA in the regulation of several proteins during exponential and stationary-phase growth. The exact function of sspB is not yet known [H]

COG id: COG2969

COG function: function code R; Stringent starvation protein B

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789623, Length=121, Percent_Identity=42.1487603305785, Blast_Score=103, Evalue=5e-24,

Paralogues:

None

Copy number: 297 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007481 [H]

Pfam domain/function: PF04386 SspB [H]

EC number: NA

Molecular weight: Translated: 15779; Mature: 15779

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: PS00228 TUBULIN_B_AUTOREG

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRELSTKPYLIRAIYEWCSDCGYTPYISVKVDDNTRVPDEYVKDGEIILNISHDAAHHLT
CCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHCCCEEEEEECCCCCEEEE
LGNEVIQFSARFAGVSREISIPLATVQGIFAKETARGMLFPAEVEPDAPQDEAAGKEADE
CCHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCC
SQSSSDRPPARATKNRRLQVVK
CCCCCCCCCCCCCCCCEEEEEC
>Mature Secondary Structure
MRELSTKPYLIRAIYEWCSDCGYTPYISVKVDDNTRVPDEYVKDGEIILNISHDAAHHLT
CCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHCCCEEEEEECCCCCEEEE
LGNEVIQFSARFAGVSREISIPLATVQGIFAKETARGMLFPAEVEPDAPQDEAAGKEADE
CCHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCC
SQSSSDRPPARATKNRRLQVVK
CCCCCCCCCCCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]