Click here to switch to the map view.

The map label for this gene is qseB [H]

Identifier: 82701839

GI number: 82701839

Start: 812535

End: 813236

Strand: Direct

Name: qseB [H]

Synonym: Nmul_A0706

Alternate gene names: 82701839

Gene position: 812535-813236 (Clockwise)

Preceding gene: 82701838

Following gene: 82701840

Centisome position: 25.52

GC content: 55.7

Gene sequence:

>702_bases
TTGTTTGGAACTCTTCACGTGCGCATACTTATTATTGAAGATGATCGGGCAATAGCCAGTAATCTGTACGACTTTCTCGA
AGCTCGCGGGCACAGTGTCGATGCCGCCGCTGATGGGATTACAGGGCTGCATCTTGCGGTTACCCAGCAGTTTGATGGCA
TTTTGCTGGATCTGGGATTGCCGGGTGCGGATGGTATAACACTATGCCGGAAGCTTCGTCAGGAAGCGCATCTCGATACC
CCGGTCCTGATGCTGACAGCGCGCGACACGCTGGAAGACAAGCTGAAAGGTTTCGATTGCGGGGCGGATGACTACCTGGT
CAAACCCTTCGCCTTGAAAGAAGTTGAAGCGCGGCTGGTTGCCATGCACAAACGTCGCAAGGGCAAGGTAACCAGTCGAA
CCCTGGAAACCGAGGATCTTTCCTTCGATCCGAAAACTCTCACAATCCGCTTCGCGGGCGCGAACGTCAAATTGCCGCCG
AAATGCATCGGCTTGCTTGCAGTCATCATGAGCGAGCCTGGCCGCGTTTTCAGTCGCAGGGAGCTCGAATCGGAAGTATG
GGGGGATGTGCAGGAAACCAGCGATACTCTCCGCAGTCACATGCACGAGCTTCGCCGCGCACTGACGCGCGCTGGGGGCT
ATGATCCAATCGAAACCGTTCACGGTCTCGGCTATCGGCTTTCCACGCGTGCCCGTAATTAG

Upstream 100 bases:

>100_bases
CGTGCGGATGCAGAGGGAAACAACAGTTTCGGCAGCTAGCGGATAAACAGAATTTTTCACCTCGAATCTACATGATATTT
TGATATTTCTGCAGGTCTGA

Downstream 100 bases:

>100_bases
GCGTGGGCTTCGCCTTCGTGTTGCACTTGCGTTTGCGATATTCTGTATTGTTGTTGTCGGAACGCTGGGTGTCAGTCTGT
ATATCGCTTCCGATGACATC

Product: two component transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MFGTLHVRILIIEDDRAIASNLYDFLEARGHSVDAAADGITGLHLAVTQQFDGILLDLGLPGADGITLCRKLRQEAHLDT
PVLMLTARDTLEDKLKGFDCGADDYLVKPFALKEVEARLVAMHKRRKGKVTSRTLETEDLSFDPKTLTIRFAGANVKLPP
KCIGLLAVIMSEPGRVFSRRELESEVWGDVQETSDTLRSHMHELRRALTRAGGYDPIETVHGLGYRLSTRARN

Sequences:

>Translated_233_residues
MFGTLHVRILIIEDDRAIASNLYDFLEARGHSVDAAADGITGLHLAVTQQFDGILLDLGLPGADGITLCRKLRQEAHLDT
PVLMLTARDTLEDKLKGFDCGADDYLVKPFALKEVEARLVAMHKRRKGKVTSRTLETEDLSFDPKTLTIRFAGANVKLPP
KCIGLLAVIMSEPGRVFSRRELESEVWGDVQETSDTLRSHMHELRRALTRAGGYDPIETVHGLGYRLSTRARN
>Mature_233_residues
MFGTLHVRILIIEDDRAIASNLYDFLEARGHSVDAAADGITGLHLAVTQQFDGILLDLGLPGADGITLCRKLRQEAHLDT
PVLMLTARDTLEDKLKGFDCGADDYLVKPFALKEVEARLVAMHKRRKGKVTSRTLETEDLSFDPKTLTIRFAGANVKLPP
KCIGLLAVIMSEPGRVFSRRELESEVWGDVQETSDTLRSHMHELRRALTRAGGYDPIETVHGLGYRLSTRARN

Specific function: Member of a two-component regulatory system qseB/qseC. Activates the flagella regulon by activating transcription of flhDC. Currently it is not known whether this effect is direct or not [H]

COG id: COG0745

COG function: function code TK; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789402, Length=225, Percent_Identity=40.8888888888889, Blast_Score=151, Evalue=3e-38,
Organism=Escherichia coli, GI1786599, Length=225, Percent_Identity=36.8888888888889, Blast_Score=138, Evalue=3e-34,
Organism=Escherichia coli, GI1790552, Length=228, Percent_Identity=34.6491228070175, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1786911, Length=226, Percent_Identity=38.0530973451327, Blast_Score=124, Evalue=4e-30,
Organism=Escherichia coli, GI1788394, Length=230, Percent_Identity=36.0869565217391, Blast_Score=124, Evalue=5e-30,
Organism=Escherichia coli, GI1786784, Length=230, Percent_Identity=34.7826086956522, Blast_Score=124, Evalue=6e-30,
Organism=Escherichia coli, GI87082012, Length=220, Percent_Identity=33.6363636363636, Blast_Score=124, Evalue=8e-30,
Organism=Escherichia coli, GI1790860, Length=223, Percent_Identity=36.322869955157, Blast_Score=120, Evalue=7e-29,
Organism=Escherichia coli, GI1787375, Length=225, Percent_Identity=29.3333333333333, Blast_Score=100, Evalue=6e-23,
Organism=Escherichia coli, GI2367329, Length=227, Percent_Identity=34.3612334801762, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1790863, Length=229, Percent_Identity=29.2576419213974, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1789809, Length=231, Percent_Identity=29.4372294372294, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1787229, Length=226, Percent_Identity=26.5486725663717, Blast_Score=77, Evalue=7e-16,
Organism=Escherichia coli, GI1788713, Length=134, Percent_Identity=32.8358208955224, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788550, Length=108, Percent_Identity=34.2592592592593, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 25891; Mature: 25891

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFGTLHVRILIIEDDRAIASNLYDFLEARGHSVDAAADGITGLHLAVTQQFDGILLDLGL
CCCEEEEEEEEEECCHHHHHHHHHHHHHCCCCCCHHHCCCCCEEEEEECCCCCEEEECCC
PGADGITLCRKLRQEAHLDTPVLMLTARDTLEDKLKGFDCGADDYLVKPFALKEVEARLV
CCCCHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHCCCCCCCCCCEECCHHHHHHHHHHH
AMHKRRKGKVTSRTLETEDLSFDPKTLTIRFAGANVKLPPKCIGLLAVIMSEPGRVFSRR
HHHHHHCCCCHHHEECCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHH
ELESEVWGDVQETSDTLRSHMHELRRALTRAGGYDPIETVHGLGYRLSTRARN
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCEEECCCCCC
>Mature Secondary Structure
MFGTLHVRILIIEDDRAIASNLYDFLEARGHSVDAAADGITGLHLAVTQQFDGILLDLGL
CCCEEEEEEEEEECCHHHHHHHHHHHHHCCCCCCHHHCCCCCEEEEEECCCCCEEEECCC
PGADGITLCRKLRQEAHLDTPVLMLTARDTLEDKLKGFDCGADDYLVKPFALKEVEARLV
CCCCHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHCCCCCCCCCCEECCHHHHHHHHHHH
AMHKRRKGKVTSRTLETEDLSFDPKTLTIRFAGANVKLPPKCIGLLAVIMSEPGRVFSRR
HHHHHHCCCCHHHEECCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHH
ELESEVWGDVQETSDTLRSHMHELRRALTRAGGYDPIETVHGLGYRLSTRARN
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796; 11929534 [H]