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The map label for this gene is rbcR [H]

Identifier: 82701820

GI number: 82701820

Start: 788802

End: 789737

Strand: Direct

Name: rbcR [H]

Synonym: Nmul_A0687

Alternate gene names: 82701820

Gene position: 788802-789737 (Clockwise)

Preceding gene: 82701816

Following gene: 82701826

Centisome position: 24.77

GC content: 54.38

Gene sequence:

>936_bases
ATGCTGCATATCACACTGCGGCAGTTAAAAGTTTTTGAATCGGTTGCCCGCCATCTGAGTTTTTCCCGTGCAGCCGAGGA
ACTCCATCTTACCCAGCCGGCAGTTTCCATGCAGATCAAGCAACTGGAAGACACCGTGGAACTTCCGTTGTTCGAGCAGA
TGGGCAAAAAGATCTACCTGACCGATGCGGGGCGCGAACTTTATCATTACAGTCGTGCCATCTCTCAGCAACTGTCAGAC
ATGGAGCTGGCGCTCGATGAATTGAAAGGACTGGAACGAGGCAGGCTCAATATTTCGGTGGTCAGTACCGCCAACTATTT
TGCCCCGCATCTGCTGGCCAAGTTCTGTCAGCGCTACCCGGACATTACCGTCAGCCTCAATGTTTCCAATCGCGAAACCG
TCCTCAAGCAACTGTCCGACAACGTGATCGATCTTGCCATCATGGGACAGCCTCCGGAAGACCTGGATATTGCGGCCGAA
TCTTTCATGGAGAATCCTCTGGTCGTCATTGCGGCGCCGGACCATCCGTTGTGCAGGATGGAGAGGATCCCTGTGAAACG
CCTGGAGCAGGAAACATTCCTGGTGCGGGAGCCGGGTTCCGGTACACGCGGCGCGATGGAGCGTTTTTTCGCATCGCACC
ATATTTCGCTCAGCAAGGGAATGGAAACGGACACCAGCGAGGCGATCAAACAGGCAGTCCAGGCAGGCATGGGTCTGGGC
ATCACCTCGCTGCACACGGTGGAGCTGGAACTGGAAACAAAACGGCTGAAGATTCTCGACGTCGAGGATTTTCCCATCAT
GCGCTACTGGCATATCGTTCATCGAAAGCACAAGCGGCTCTCCAGTGTTGCCCAGGCATTCAAGGAATTTCTGCTGAAAG
AGGCTCGCGGATTGATGCCGATGTCACACAAAAGAGCGGCTGAAGCCTGGCGATAG

Upstream 100 bases:

>100_bases
ATTGTAATCGATATTACTATAAATAACAGTCACATGTTTTGATTGTTATGATAAGATTATGCTTATATATTTTCACTCTC
CCATGAAACCATGAGGGAAT

Downstream 100 bases:

>100_bases
CTTTCCCCCGCAGCCATTCCAGCATGGAATGCTGCCGGCAGGAATGTTATCTGTCCAGGATGTTTATTCGTCTTCGACGG
TGGAAGGAGAATTATCCGGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MLHITLRQLKVFESVARHLSFSRAAEELHLTQPAVSMQIKQLEDTVELPLFEQMGKKIYLTDAGRELYHYSRAISQQLSD
MELALDELKGLERGRLNISVVSTANYFAPHLLAKFCQRYPDITVSLNVSNRETVLKQLSDNVIDLAIMGQPPEDLDIAAE
SFMENPLVVIAAPDHPLCRMERIPVKRLEQETFLVREPGSGTRGAMERFFASHHISLSKGMETDTSEAIKQAVQAGMGLG
ITSLHTVELELETKRLKILDVEDFPIMRYWHIVHRKHKRLSSVAQAFKEFLLKEARGLMPMSHKRAAEAWR

Sequences:

>Translated_311_residues
MLHITLRQLKVFESVARHLSFSRAAEELHLTQPAVSMQIKQLEDTVELPLFEQMGKKIYLTDAGRELYHYSRAISQQLSD
MELALDELKGLERGRLNISVVSTANYFAPHLLAKFCQRYPDITVSLNVSNRETVLKQLSDNVIDLAIMGQPPEDLDIAAE
SFMENPLVVIAAPDHPLCRMERIPVKRLEQETFLVREPGSGTRGAMERFFASHHISLSKGMETDTSEAIKQAVQAGMGLG
ITSLHTVELELETKRLKILDVEDFPIMRYWHIVHRKHKRLSSVAQAFKEFLLKEARGLMPMSHKRAAEAWR
>Mature_311_residues
MLHITLRQLKVFESVARHLSFSRAAEELHLTQPAVSMQIKQLEDTVELPLFEQMGKKIYLTDAGRELYHYSRAISQQLSD
MELALDELKGLERGRLNISVVSTANYFAPHLLAKFCQRYPDITVSLNVSNRETVLKQLSDNVIDLAIMGQPPEDLDIAAE
SFMENPLVVIAAPDHPLCRMERIPVKRLEQETFLVREPGSGTRGAMERFFASHHISLSKGMETDTSEAIKQAVQAGMGLG
ITSLHTVELELETKRLKILDVEDFPIMRYWHIVHRKHKRLSSVAQAFKEFLLKEARGLMPMSHKRAAEAWR

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcAB) expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=290, Percent_Identity=32.4137931034483, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI157672245, Length=282, Percent_Identity=28.7234042553192, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI1788748, Length=304, Percent_Identity=25.3289473684211, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1787879, Length=305, Percent_Identity=27.8688524590164, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1788887, Length=242, Percent_Identity=30.5785123966942, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI145693105, Length=300, Percent_Identity=25.3333333333333, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1789173, Length=298, Percent_Identity=28.5234899328859, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1790399, Length=259, Percent_Identity=26.2548262548263, Blast_Score=91, Evalue=9e-20,
Organism=Escherichia coli, GI1786401, Length=293, Percent_Identity=26.2798634812287, Blast_Score=88, Evalue=9e-19,
Organism=Escherichia coli, GI1787530, Length=249, Percent_Identity=25.7028112449799, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1789204, Length=302, Percent_Identity=25.8278145695364, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1790208, Length=261, Percent_Identity=27.2030651340996, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787601, Length=178, Percent_Identity=26.4044943820225, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI87082132, Length=251, Percent_Identity=24.7011952191235, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788297, Length=240, Percent_Identity=22.5, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787128, Length=304, Percent_Identity=24.3421052631579, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI2367136, Length=242, Percent_Identity=24.7933884297521, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1788706, Length=258, Percent_Identity=27.1317829457364, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787949, Length=265, Percent_Identity=26.0377358490566, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1786508, Length=178, Percent_Identity=29.2134831460674, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI87081904, Length=232, Percent_Identity=24.5689655172414, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1788296, Length=244, Percent_Identity=21.7213114754098, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1789506, Length=294, Percent_Identity=23.469387755102, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI48994962, Length=151, Percent_Identity=31.1258278145695, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35440; Mature: 35440

Theoretical pI: Translated: 7.21; Mature: 7.21

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLHITLRQLKVFESVARHLSFSRAAEELHLTQPAVSMQIKQLEDTVELPLFEQMGKKIYL
CEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHCCCEEEE
TDAGRELYHYSRAISQQLSDMELALDELKGLERGRLNISVVSTANYFAPHLLAKFCQRYP
ECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHHCC
DITVSLNVSNRETVLKQLSDNVIDLAIMGQPPEDLDIAAESFMENPLVVIAAPDHPLCRM
CEEEEEECCHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHCCCEEEEECCCCCCHHH
ERIPVKRLEQETFLVREPGSGTRGAMERFFASHHISLSKGMETDTSEAIKQAVQAGMGLG
HCCCHHHHCCHHEEEECCCCCCHHHHHHHHHHHCCCHHCCCCCCHHHHHHHHHHHCCCCC
ITSLHTVELELETKRLKILDVEDFPIMRYWHIVHRKHKRLSSVAQAFKEFLLKEARGLMP
CCEEEEEEEEEEECEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
MSHKRAAEAWR
CCHHHHHHCCC
>Mature Secondary Structure
MLHITLRQLKVFESVARHLSFSRAAEELHLTQPAVSMQIKQLEDTVELPLFEQMGKKIYL
CEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHCCCEEEE
TDAGRELYHYSRAISQQLSDMELALDELKGLERGRLNISVVSTANYFAPHLLAKFCQRYP
ECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHHCC
DITVSLNVSNRETVLKQLSDNVIDLAIMGQPPEDLDIAAESFMENPLVVIAAPDHPLCRM
CEEEEEECCHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHCCCEEEEECCCCCCHHH
ERIPVKRLEQETFLVREPGSGTRGAMERFFASHHISLSKGMETDTSEAIKQAVQAGMGLG
HCCCHHHHCCHHEEEECCCCCCHHHHHHHHHHHCCCHHCCCCCCHHHHHHHHHHHCCCCC
ITSLHTVELELETKRLKILDVEDFPIMRYWHIVHRKHKRLSSVAQAFKEFLLKEARGLMP
CCEEEEEEEEEEECEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
MSHKRAAEAWR
CCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1907267; 2708310 [H]