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The map label for this gene is slyD [H]

Identifier: 82701802

GI number: 82701802

Start: 764865

End: 765443

Strand: Direct

Name: slyD [H]

Synonym: Nmul_A0669

Alternate gene names: 82701802

Gene position: 764865-765443 (Clockwise)

Preceding gene: 82701801

Following gene: 82701806

Centisome position: 24.02

GC content: 51.99

Gene sequence:

>579_bases
ATGAAGGCATCGAGCGCATGGCTCTTGGCATTTTTATCATTTCCTGAGGAAATTCCTGATAACCTAACTTGCAGGCTCAA
CGATATGCAAATTGAAAAAGGCACCGTGGTATCGCTCAATTATATTTTGTCTGATTCAACCGGTGAAATTCTGGAGAAAT
CCAATTTTCCTGTAAGCTACCTCCACGGTGGTTACCACGATGAAATGTTTCCGAAGGTGGAAGAGGAGCTGACTCACAAG
GAAGCAGGGTACCGTTGCCTGGTCGTGATGGAACCGGAGGATGCTTTTGGCGAATATGACAGCGATCTCGTGCGGGTCGA
GTCACGCAGCCGCTTTCCCGAGGATGTCGTGGTGGGCATGAAGTTCGAAGGGGGCGAGGAAGAGTCGGACAATGTCCGGA
TATATACAGTGACAGACATTGCCGAAGACAAGGTCGTGGTGGACGGCAATCATCCTCTGGCGGGGCAGTCGGTTCGATTT
GAATGCGAGGTAACCGATGTGCGTCCCGCTACTGCCGAAGAGCTGGCTCATGGCCACGCTCACGGTCCGCATGGTCATGG
CCACGGGCATGAGCATTAA

Upstream 100 bases:

>100_bases
GGCTCCTGCTTCCGGCAATTTCCATTCCGCCTGACCGGCTGCCCCGCAAAAAAGCCATATTCCATTTAAGGACTGCGAAT
GCAATAATGAATGATTCTCG

Downstream 100 bases:

>100_bases
GACGTGAACTCTGGTGGAGATCACCGTTAGAGATATAAGTCGAAGCTATTCTTTCTCTGCCGCCTTCTTCAAGCCGTAGA
GCTGCTCCAGGGCCTGTTTC

Product: FKBP-type peptidyl-prolyl cis-trans isomerase

Products: NA

Alternate protein names: PPIase; Metallochaperone slyD [H]

Number of amino acids: Translated: 192; Mature: 192

Protein sequence:

>192_residues
MKASSAWLLAFLSFPEEIPDNLTCRLNDMQIEKGTVVSLNYILSDSTGEILEKSNFPVSYLHGGYHDEMFPKVEEELTHK
EAGYRCLVVMEPEDAFGEYDSDLVRVESRSRFPEDVVVGMKFEGGEEESDNVRIYTVTDIAEDKVVVDGNHPLAGQSVRF
ECEVTDVRPATAEELAHGHAHGPHGHGHGHEH

Sequences:

>Translated_192_residues
MKASSAWLLAFLSFPEEIPDNLTCRLNDMQIEKGTVVSLNYILSDSTGEILEKSNFPVSYLHGGYHDEMFPKVEEELTHK
EAGYRCLVVMEPEDAFGEYDSDLVRVESRSRFPEDVVVGMKFEGGEEESDNVRIYTVTDIAEDKVVVDGNHPLAGQSVRF
ECEVTDVRPATAEELAHGHAHGPHGHGHGHEH
>Mature_192_residues
MKASSAWLLAFLSFPEEIPDNLTCRLNDMQIEKGTVVSLNYILSDSTGEILEKSNFPVSYLHGGYHDEMFPKVEEELTHK
EAGYRCLVVMEPEDAFGEYDSDLVRVESRSRFPEDVVVGMKFEGGEEESDNVRIYTVTDIAEDKVVVDGNHPLAGQSVRF
ECEVTDVRPATAEELAHGHAHGPHGHGHGHEH

Specific function: Also involved in hydrogenase metallocenter assembly, probably by participating in the nickel insertion step. This function in hydrogenase biosynthesis requires chaperone activity and the presence of the metal-binding domain, but not PPIase activity [H]

COG id: COG1047

COG function: function code O; FKBP-type peptidyl-prolyl cis-trans isomerases 2

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PPIase FKBP-type domain [H]

Homologues:

Organism=Escherichia coli, GI1789748, Length=161, Percent_Identity=39.1304347826087, Blast_Score=84, Evalue=8e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001179 [H]

Pfam domain/function: PF00254 FKBP_C [H]

EC number: =5.2.1.8 [H]

Molecular weight: Translated: 21440; Mature: 21440

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: PS50059 FKBP_PPIASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKASSAWLLAFLSFPEEIPDNLTCRLNDMQIEKGTVVSLNYILSDSTGEILEKSNFPVSY
CCCCHHHHHHHHHCHHHCCCCEEEEEECEEECCCCEEEEEEEEECCCHHHHHCCCCCEEE
LHGGYHDEMFPKVEEELTHKEAGYRCLVVMEPEDAFGEYDSDLVRVESRSRFPEDVVVGM
ECCCCCCHHCHHHHHHHHHHCCCCEEEEEECCCHHCCCCCCCEEEECCCCCCCCCEEEEE
KFEGGEEESDNVRIYTVTDIAEDKVVVDGNHPLAGQSVRFECEVTDVRPATAEELAHGHA
EECCCCCCCCCEEEEEEECCCCCEEEEECCCCCCCCCEEEEEEEECCCCCCHHHHHCCCC
HGPHGHGHGHEH
CCCCCCCCCCCC
>Mature Secondary Structure
MKASSAWLLAFLSFPEEIPDNLTCRLNDMQIEKGTVVSLNYILSDSTGEILEKSNFPVSY
CCCCHHHHHHHHHCHHHCCCCEEEEEECEEECCCCEEEEEEEEECCCHHHHHCCCCCEEE
LHGGYHDEMFPKVEEELTHKEAGYRCLVVMEPEDAFGEYDSDLVRVESRSRFPEDVVVGM
ECCCCCCHHCHHHHHHHHHHCCCCEEEEEECCCHHCCCCCCCEEEECCCCCCCCCEEEEE
KFEGGEEESDNVRIYTVTDIAEDKVVVDGNHPLAGQSVRFECEVTDVRPATAEELAHGHA
EECCCCCCCCCEEEEEEECCCCCEEEEECCCCCCCCCEEEEEEEECCCCCCHHHHHCCCC
HGPHGHGHGHEH
CCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]