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The map label for this gene is rlpA [C]

Identifier: 82701449

GI number: 82701449

Start: 339350

End: 340534

Strand: Reverse

Name: rlpA [C]

Synonym: Nmul_A0315

Alternate gene names: 82701449

Gene position: 340534-339350 (Counterclockwise)

Preceding gene: 82701450

Following gene: 82701448

Centisome position: 10.69

GC content: 58.31

Gene sequence:

>1185_bases
ATGGATAAACTCCCTGCCTGCCTGTCCCTCATACCGTCAACTGCGCAGTCAAGAGGCCAGCCGGTTGCCAGGCGATGCGC
CGCCTGGATGGCTGCACTGACTATTCCGGTTTTCCTCACCGGCTGCGGCACCTTTTTCAAGCTGGAGAAAAGCGAGGAAA
AGAGTGTGAAGCCTTCACCGGTCTCCACTCTGTTCGGAGGCAAGAAAAAGGGAGGCGGTTATTACCTGGATGATGGTCCC
GGCGACAATCCGCCAGCCGATCTCCATCTGATCCCTGATGCCGTGCCGCGGGAAGAACCCTTGCGCGCCTCCACCATGCG
GCCTTATTCAGCTCTCGGAAAACGGTATAAACCGATGACGCGTCACGAGCGCTATAAAACGCGGGGAATGGCATCCTGGT
ATGGGCGCCGCTATCACGGGCAGAAGACCGCGTCGGGGGAAGTCTACGATATGTATGCCATGACGGCTGCACACCCTACC
CTCCCCATTCCGAGCTACGCACGCGTGACAAGCGTGACGAGCGGAAAATCCGTGGTGGTGCGTGTCAATGACAGGGGGCC
TTTCCTCTCCAATCGCCTCATTGATCTTTCCTATACCGCCGCATATAAACTGGATGTACTGGGTGGGGGCAGCGGTCTGG
TCGAAGTGGAATCCATTGTGCCCGGAACGGGTAGTTTCACGCAGCTTGCCGCAGCTGCCTCTGCCGAGCGTCCAGGTTCA
ACATCCAGCCCCTCCAGGTTTCTCCCCGGCTCTCCCACCAATCTAAATGGGCAGGGAATCATAGCTGACCAATCGGTGAC
GGTCACTCCCCCTACCGATCCCGACTCCAATGAAGCGCAGCCGGGTCTGTTCCAGGCTTCTTTTGCGCCCGCAGTAGCTG
ATACGCCCCCCGGCCCCAGCCTTGCCGGCGAAGGCGCTCCTGTCTCATCTCCCGAAACGCCTGCTGCCGTTCCTGCGGGG
ATCTACCTGCAATTGGGAGCCTTCAATGCGTATGACAATGCGGATAATTTTGTCGTCCGCATGAGAAACGAATTACCATC
GCTGATGACCAGCCTGGATATCGTTGCAAAGGATGGCCTGTTCAAGGTCCATGCGGGTCCTTACCCTGACCGTGCCTTGG
CCAGAAAGGCTGCGGACAAAATCGCCGAAGCGCTGTCAATCAAGCCGGTGCTGCTGATGCGGTAG

Upstream 100 bases:

>100_bases
TGATCAGCTATGGCGGCACATCAATGGTGACAATGTTGCTGGGATTTGGTATTTTGATGAGTATCCAGACTCATCCGAAG
CTTGTTAAGACGTGATACTT

Downstream 100 bases:

>100_bases
GCCGCACATCCTTTTCATCGCGAAGCCACACAAATCTGCTCCCCATCCGGCGGTTGCTTGGCAATCCAGCAGCCGCAGAA
GGGTTTCCGATTTGAACTTT

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 394; Mature: 394

Protein sequence:

>394_residues
MDKLPACLSLIPSTAQSRGQPVARRCAAWMAALTIPVFLTGCGTFFKLEKSEEKSVKPSPVSTLFGGKKKGGGYYLDDGP
GDNPPADLHLIPDAVPREEPLRASTMRPYSALGKRYKPMTRHERYKTRGMASWYGRRYHGQKTASGEVYDMYAMTAAHPT
LPIPSYARVTSVTSGKSVVVRVNDRGPFLSNRLIDLSYTAAYKLDVLGGGSGLVEVESIVPGTGSFTQLAAAASAERPGS
TSSPSRFLPGSPTNLNGQGIIADQSVTVTPPTDPDSNEAQPGLFQASFAPAVADTPPGPSLAGEGAPVSSPETPAAVPAG
IYLQLGAFNAYDNADNFVVRMRNELPSLMTSLDIVAKDGLFKVHAGPYPDRALARKAADKIAEALSIKPVLLMR

Sequences:

>Translated_394_residues
MDKLPACLSLIPSTAQSRGQPVARRCAAWMAALTIPVFLTGCGTFFKLEKSEEKSVKPSPVSTLFGGKKKGGGYYLDDGP
GDNPPADLHLIPDAVPREEPLRASTMRPYSALGKRYKPMTRHERYKTRGMASWYGRRYHGQKTASGEVYDMYAMTAAHPT
LPIPSYARVTSVTSGKSVVVRVNDRGPFLSNRLIDLSYTAAYKLDVLGGGSGLVEVESIVPGTGSFTQLAAAASAERPGS
TSSPSRFLPGSPTNLNGQGIIADQSVTVTPPTDPDSNEAQPGLFQASFAPAVADTPPGPSLAGEGAPVSSPETPAAVPAG
IYLQLGAFNAYDNADNFVVRMRNELPSLMTSLDIVAKDGLFKVHAGPYPDRALARKAADKIAEALSIKPVLLMR
>Mature_394_residues
MDKLPACLSLIPSTAQSRGQPVARRCAAWMAALTIPVFLTGCGTFFKLEKSEEKSVKPSPVSTLFGGKKKGGGYYLDDGP
GDNPPADLHLIPDAVPREEPLRASTMRPYSALGKRYKPMTRHERYKTRGMASWYGRRYHGQKTASGEVYDMYAMTAAHPT
LPIPSYARVTSVTSGKSVVVRVNDRGPFLSNRLIDLSYTAAYKLDVLGGGSGLVEVESIVPGTGSFTQLAAAASAERPGS
TSSPSRFLPGSPTNLNGQGIIADQSVTVTPPTDPDSNEAQPGLFQASFAPAVADTPPGPSLAGEGAPVSSPETPAAVPAG
IYLQLGAFNAYDNADNFVVRMRNELPSLMTSLDIVAKDGLFKVHAGPYPDRALARKAADKIAEALSIKPVLLMR

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=115, Percent_Identity=46.9565217391304, Blast_Score=107, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 41783; Mature: 41783

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKLPACLSLIPSTAQSRGQPVARRCAAWMAALTIPVFLTGCGTFFKLEKSEEKSVKPSP
CCCCCHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCC
VSTLFGGKKKGGGYYLDDGPGDNPPADLHLIPDAVPREEPLRASTMRPYSALGKRYKPMT
HHHHCCCCCCCCCEEECCCCCCCCCCCEEECCCCCCCCCCCCHHCCCCHHHHHHHCCCCH
RHERYKTRGMASWYGRRYHGQKTASGEVYDMYAMTAAHPTLPIPSYARVTSVTSGKSVVV
HHHHHHHCCHHHHHHHHHCCCCCCCCCEEEEEEEHHCCCCCCCCCCHHHEEECCCCEEEE
RVNDRGPFLSNRLIDLSYTAAYKLDVLGGGSGLVEVESIVPGTGSFTQLAAAASAERPGS
EECCCCCCHHCCEEEEEEEEEEEEEEEECCCCCEEEEEECCCCCCHHHHHHHHCCCCCCC
TSSPSRFLPGSPTNLNGQGIIADQSVTVTPPTDPDSNEAQPGLFQASFAPAVADTPPGPS
CCCCCCCCCCCCCCCCCCEEEECCEEEECCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
LAGEGAPVSSPETPAAVPAGIYLQLGAFNAYDNADNFVVRMRNELPSLMTSLDIVAKDGL
CCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCE
FKVHAGPYPDRALARKAADKIAEALSIKPVLLMR
EEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEC
>Mature Secondary Structure
MDKLPACLSLIPSTAQSRGQPVARRCAAWMAALTIPVFLTGCGTFFKLEKSEEKSVKPSP
CCCCCHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCC
VSTLFGGKKKGGGYYLDDGPGDNPPADLHLIPDAVPREEPLRASTMRPYSALGKRYKPMT
HHHHCCCCCCCCCEEECCCCCCCCCCCEEECCCCCCCCCCCCHHCCCCHHHHHHHCCCCH
RHERYKTRGMASWYGRRYHGQKTASGEVYDMYAMTAAHPTLPIPSYARVTSVTSGKSVVV
HHHHHHHCCHHHHHHHHHCCCCCCCCCEEEEEEEHHCCCCCCCCCCHHHEEECCCCEEEE
RVNDRGPFLSNRLIDLSYTAAYKLDVLGGGSGLVEVESIVPGTGSFTQLAAAASAERPGS
EECCCCCCHHCCEEEEEEEEEEEEEEEECCCCCEEEEEECCCCCCHHHHHHHHCCCCCCC
TSSPSRFLPGSPTNLNGQGIIADQSVTVTPPTDPDSNEAQPGLFQASFAPAVADTPPGPS
CCCCCCCCCCCCCCCCCCEEEECCEEEECCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
LAGEGAPVSSPETPAAVPAGIYLQLGAFNAYDNADNFVVRMRNELPSLMTSLDIVAKDGL
CCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCE
FKVHAGPYPDRALARKAADKIAEALSIKPVLLMR
EEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10761919 [H]