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The map label for this gene is rssA [H]

Identifier: 82701298

GI number: 82701298

Start: 171712

End: 172614

Strand: Reverse

Name: rssA [H]

Synonym: Nmul_A0164

Alternate gene names: 82701298

Gene position: 172614-171712 (Counterclockwise)

Preceding gene: 82701299

Following gene: 82701297

Centisome position: 5.42

GC content: 60.02

Gene sequence:

>903_bases
ATGAGCGGGATTCGCGCGCCCCGGGTCGGACTTGTGCTGGGCAGTGGCTCCGCCCGCGGCTGGGCGCATATCGGTGTAAT
CCGTGCCCTTGAGCAAGCGGGTGTTCGGCCAGATCTCGTTTGCGGAACATCTATCGGTTCGCTGGTAGGCGCCGTCTACG
CAGCAGGGGAACTGGATCGCTTCGAGCAGTGGGTACTTGGATTGGGCGTTCGGGAGGTCATTGCATATATCGATATAAGC
CTGGGCAGTGGGCTCCTCAAGGGCGAGCGGCTAATGAGCTTCTTTCGAGATAAATTCCCCGATCGACCTGTTCAGGACCT
GGCCCTACCCTTCGCCGCGGTAGCCACATCGCTGCATACCGGCGCCGAGGTCTGGCTGCGCGAAGGATCGACCCTTGAGG
CAGTGCGTGCGTCCATCGCCCTGCCTGGGCTGTTCTCCCCTGTGCTGTGCGAAGGTTCGGTTTTGGTGGATGGCGGACTT
GTCAATCCAGTCCCGGTATCGCTGGCTCGGGCAATGGGCGCCGATGTGGTGATCGCAGTTGATCTGAGCTTTGATATGTT
GGGGCGCCATCTGCGCGCCGAGCCTCCTCCCGACGCATCAGCTGGCGATGTTATGGATTGGATACGCAAGCTACAGGAGA
GTCTTGGAGCGCTCCTCCCTGCGCATTCGGCCGAAATACCCAAGATGCCATCCATGCTGGACGTGCTGGCTTCCAGTATC
AATATTATGCAGGTACGGATTAACCGCAGCCGCATGGCGGGCGAACCTCCCGACCTCATAATAGCGCCCCGACTGGCCCA
CCTTGGCCTGCTCGATTTTCATCGAGCGAGGGAAGCCATCGAGGAGGGAAAGCAGGCTGTGGAGCGGGTGGCTCACAGTC
TTTCCGATCTCAACAGAATGTAG

Upstream 100 bases:

>100_bases
AGCAGATGTTGAATTTCATAGACAGGGAAAACATTGAGGTACGCTGCGGAACCATCGAGTCGTGCCGGCAGCACCTTCAC
CCTCCGCATGGAGATTGCGT

Downstream 100 bases:

>100_bases
GCATACCGATTGGAGCGTCCGGAGGGCTTGCCTTGGGCAAAGTTGAGAGTGCAACTCAACGCCACACAATCCCAAAACGG
GAGAGAATGCGATGATCAAG

Product: patatin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 299

Protein sequence:

>300_residues
MSGIRAPRVGLVLGSGSARGWAHIGVIRALEQAGVRPDLVCGTSIGSLVGAVYAAGELDRFEQWVLGLGVREVIAYIDIS
LGSGLLKGERLMSFFRDKFPDRPVQDLALPFAAVATSLHTGAEVWLREGSTLEAVRASIALPGLFSPVLCEGSVLVDGGL
VNPVPVSLARAMGADVVIAVDLSFDMLGRHLRAEPPPDASAGDVMDWIRKLQESLGALLPAHSAEIPKMPSMLDVLASSI
NIMQVRINRSRMAGEPPDLIIAPRLAHLGLLDFHRAREAIEEGKQAVERVAHSLSDLNRM

Sequences:

>Translated_300_residues
MSGIRAPRVGLVLGSGSARGWAHIGVIRALEQAGVRPDLVCGTSIGSLVGAVYAAGELDRFEQWVLGLGVREVIAYIDIS
LGSGLLKGERLMSFFRDKFPDRPVQDLALPFAAVATSLHTGAEVWLREGSTLEAVRASIALPGLFSPVLCEGSVLVDGGL
VNPVPVSLARAMGADVVIAVDLSFDMLGRHLRAEPPPDASAGDVMDWIRKLQESLGALLPAHSAEIPKMPSMLDVLASSI
NIMQVRINRSRMAGEPPDLIIAPRLAHLGLLDFHRAREAIEEGKQAVERVAHSLSDLNRM
>Mature_299_residues
SGIRAPRVGLVLGSGSARGWAHIGVIRALEQAGVRPDLVCGTSIGSLVGAVYAAGELDRFEQWVLGLGVREVIAYIDISL
GSGLLKGERLMSFFRDKFPDRPVQDLALPFAAVATSLHTGAEVWLREGSTLEAVRASIALPGLFSPVLCEGSVLVDGGLV
NPVPVSLARAMGADVVIAVDLSFDMLGRHLRAEPPPDASAGDVMDWIRKLQESLGALLPAHSAEIPKMPSMLDVLASSIN
IMQVRINRSRMAGEPPDLIIAPRLAHLGLLDFHRAREAIEEGKQAVERVAHSLSDLNRM

Specific function: Unknown

COG id: COG1752

COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 patatin domain [H]

Homologues:

Organism=Homo sapiens, GI260656041, Length=183, Percent_Identity=39.8907103825137, Blast_Score=115, Evalue=5e-26,
Organism=Homo sapiens, GI116256487, Length=183, Percent_Identity=39.8907103825137, Blast_Score=115, Evalue=5e-26,
Organism=Homo sapiens, GI260656039, Length=183, Percent_Identity=39.8907103825137, Blast_Score=115, Evalue=6e-26,
Organism=Homo sapiens, GI260656037, Length=183, Percent_Identity=39.8907103825137, Blast_Score=115, Evalue=6e-26,
Organism=Homo sapiens, GI260656043, Length=183, Percent_Identity=39.8907103825137, Blast_Score=115, Evalue=6e-26,
Organism=Homo sapiens, GI148727290, Length=183, Percent_Identity=37.7049180327869, Blast_Score=109, Evalue=3e-24,
Organism=Homo sapiens, GI148727335, Length=183, Percent_Identity=37.7049180327869, Blast_Score=109, Evalue=3e-24,
Organism=Escherichia coli, GI226510936, Length=294, Percent_Identity=43.5374149659864, Blast_Score=245, Evalue=3e-66,
Organism=Caenorhabditis elegans, GI71997289, Length=168, Percent_Identity=34.5238095238095, Blast_Score=84, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI71997299, Length=168, Percent_Identity=34.5238095238095, Blast_Score=84, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI193204778, Length=195, Percent_Identity=32.8205128205128, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI28571388, Length=183, Percent_Identity=31.6939890710383, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI281376913, Length=183, Percent_Identity=30.0546448087432, Blast_Score=78, Evalue=8e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016035
- InterPro:   IPR001423
- InterPro:   IPR002641 [H]

Pfam domain/function: PF01734 Patatin [H]

EC number: NA

Molecular weight: Translated: 32009; Mature: 31877

Theoretical pI: Translated: 6.17; Mature: 6.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGIRAPRVGLVLGSGSARGWAHIGVIRALEQAGVRPDLVCGTSIGSLVGAVYAAGELDR
CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHCCHHH
FEQWVLGLGVREVIAYIDISLGSGLLKGERLMSFFRDKFPDRPVQDLALPFAAVATSLHT
HHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
GAEVWLREGSTLEAVRASIALPGLFSPVLCEGSVLVDGGLVNPVPVSLARAMGADVVIAV
CHHHHHCCCCHHHHHHHHHCCCCCCHHHHHCCCEEECCCCCCCHHHHHHHHCCCCEEEEE
DLSFDMLGRHLRAEPPPDASAGDVMDWIRKLQESLGALLPAHSAEIPKMPSMLDVLASSI
ECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCC
NIMQVRINRSRMAGEPPDLIIAPRLAHLGLLDFHRAREAIEEGKQAVERVAHSLSDLNRM
EEEEEEECHHHCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SGIRAPRVGLVLGSGSARGWAHIGVIRALEQAGVRPDLVCGTSIGSLVGAVYAAGELDR
CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHCCHHH
FEQWVLGLGVREVIAYIDISLGSGLLKGERLMSFFRDKFPDRPVQDLALPFAAVATSLHT
HHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
GAEVWLREGSTLEAVRASIALPGLFSPVLCEGSVLVDGGLVNPVPVSLARAMGADVVIAV
CHHHHHCCCCHHHHHHHHHCCCCCCHHHHHCCCEEECCCCCCCHHHHHHHHCCCCEEEEE
DLSFDMLGRHLRAEPPPDASAGDVMDWIRKLQESLGALLPAHSAEIPKMPSMLDVLASSI
ECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCC
NIMQVRINRSRMAGEPPDLIIAPRLAHLGLLDFHRAREAIEEGKQAVERVAHSLSDLNRM
EEEEEEECHHHCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8282700; 9097039; 8905232; 9278503 [H]