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The map label for this gene is csgD [C]

Identifier: 82701299

GI number: 82701299

Start: 173234

End: 173473

Strand: Reverse

Name: csgD [C]

Synonym: Nmul_A0165

Alternate gene names: 82701299

Gene position: 173473-173234 (Counterclockwise)

Preceding gene: 82701300

Following gene: 82701298

Centisome position: 5.45

GC content: 46.67

Gene sequence:

>240_bases
ATGGACTGGGTAGGAAAGGGAAAAACCAATGCCGAAATAGGCAGCATTCTGTCCATCAGTGAATTCACAGTAAGGAATCA
CCTGTACCATATCTTCCAGAAATTAGGTGTTTATAACCGGACTCAGGCTGCTTCCAAAGTCGCCCAAACTTGGGGTATGC
GTTCTGAACAGCACATCAATGGAGCTCCAGACACACTTTTCCCGCAAACCAATAATCCTCCGTTAGCGGGTGAGCTTTAG

Upstream 100 bases:

>100_bases
CGAGACTACGTCGGATCGCGCCCTTTCCTCATCTTTCTGCTCGCCGGCTGATTCACTCGGTGGCAAGGGTCATGGGCTAA
GTGAACGCGAAAGCGAAATA

Downstream 100 bases:

>100_bases
ATTCAGGGCTCATTAATTGAGAAAAAATGACAGCTGCGCGATGAAGATCGATCTCAGGAATATCTTTTAATTAAACAATA
TGAAACCCGCCCGAATAAGG

Product: LuxR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator LuxR Family; Response Regulator Receiver Protein

Number of amino acids: Translated: 79; Mature: 79

Protein sequence:

>79_residues
MDWVGKGKTNAEIGSILSISEFTVRNHLYHIFQKLGVYNRTQAASKVAQTWGMRSEQHINGAPDTLFPQTNNPPLAGEL

Sequences:

>Translated_79_residues
MDWVGKGKTNAEIGSILSISEFTVRNHLYHIFQKLGVYNRTQAASKVAQTWGMRSEQHINGAPDTLFPQTNNPPLAGEL
>Mature_79_residues
MDWVGKGKTNAEIGSILSISEFTVRNHLYHIFQKLGVYNRTQAASKVAQTWGMRSEQHINGAPDTLFPQTNNPPLAGEL

Specific function: Necessary For Transcription Of The Csgab Operon. May Have The Capability To Respond To Starvation And/Or High Cell Density By Activating Csgba Transcription. [C]

COG id: COG2771

COG function: function code K; DNA-binding HTH domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 8783; Mature: 8783

Theoretical pI: Translated: 9.09; Mature: 9.09

Prosite motif: PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDWVGKGKTNAEIGSILSISEFTVRNHLYHIFQKLGVYNRTQAASKVAQTWGMRSEQHIN
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCC
GAPDTLFPQTNNPPLAGEL
CCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDWVGKGKTNAEIGSILSISEFTVRNHLYHIFQKLGVYNRTQAASKVAQTWGMRSEQHIN
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCC
GAPDTLFPQTNNPPLAGEL
CCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA