| Definition | Shigella boydii Sb227, complete genome. |
|---|---|
| Accession | NC_007613 |
| Length | 4,519,823 |
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The map label for this gene is phnP [H]
Identifier: 82546428
GI number: 82546428
Start: 4163526
End: 4164284
Strand: Reverse
Name: phnP [H]
Synonym: SBO_4118
Alternate gene names: 82546428
Gene position: 4164284-4163526 (Counterclockwise)
Preceding gene: 82546429
Following gene: 82546425
Centisome position: 92.13
GC content: 60.08
Gene sequence:
>759_bases ATGAGCCTGACCCTCACGCTCACCGGCACCGGCGGCGCACAGGGCGTTCCGGCATGGGGCTGCGAGTGCGTAGCCTGCGC CAGAGCGCGGCGCTCACCGCAGTATCGCCGCCAGCCATGCAGCGGCGTAGTGAAGTTTAACGACGCAATCACCCTGATCG ACGCCGGGCTGCACGATCTCGCCGATCGCTGGCCGCCCGGATCGTTCCAGCAGTTTTTGCTGACGCACTACCATATGGAT CACGTGCAGGGGCTATTCCCGCTGCGCTGGGGCGTGGGCGATCCGATCCCGGTTTACGGCCCGCCGGATGAACAGGGCTG CGACGATCTGTTTAAACATCCGGGCCTGCTTGATTTCAGCCACACGGTGGAACCGTTTGTGGTGTTTGATTTGCAGGGGT TACAGGTCACGCCCCTGCCGCTCAACCACTCAAAACTGACCTTCGGTTATCTGCTGGAAACGGCACACAGCCGGGTGGCG TGGCTGTCTGACACCGCAGGCTTGCCGGAAAAAACGCTGAAATTTTTACGCAATAATCAGCCGCAGGTAATGGTGATTGA TTGCAGCCACCCGCCGCGCGAGGATGCGCCACGTAGTCACTGTGATTTAAACACCGTGCTGGCGCTGAATCAGGTTATCC GCTCGCCACGGGTGATTCTGACCCATATCAGCCACCAGTTTGATGCGTGGCTGATGGAAAACGCACTGCCGTCGGGGTTT GAGGCGGGATTTGATGGGATGGAGATTGGGGTGGCGTGA
Upstream 100 bases:
>100_bases ACCGAACTTTCCACCAACGTGAAGCGCCACGACGCGCACCGTTTTTACCTGCGTGAAGGCTACGAGCAGAGCCACTTCCG CTTCACCAAGGCGCTGTAAC
Downstream 100 bases:
>100_bases TGAGAGGGAATGTGCGCGCTGGCCCCCTCACCCTAACCCTCTCCCCAGAGGGGCGAGGGGACCGATTGTGCTCGATATTG AATATTGCGCTGGTTTTCTC
Product: carbon-phosphorus lyase complex accessory protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 252; Mature: 251
Protein sequence:
>252_residues MSLTLTLTGTGGAQGVPAWGCECVACARARRSPQYRRQPCSGVVKFNDAITLIDAGLHDLADRWPPGSFQQFLLTHYHMD HVQGLFPLRWGVGDPIPVYGPPDEQGCDDLFKHPGLLDFSHTVEPFVVFDLQGLQVTPLPLNHSKLTFGYLLETAHSRVA WLSDTAGLPEKTLKFLRNNQPQVMVIDCSHPPREDAPRSHCDLNTVLALNQVIRSPRVILTHISHQFDAWLMENALPSGF EAGFDGMEIGVA
Sequences:
>Translated_252_residues MSLTLTLTGTGGAQGVPAWGCECVACARARRSPQYRRQPCSGVVKFNDAITLIDAGLHDLADRWPPGSFQQFLLTHYHMD HVQGLFPLRWGVGDPIPVYGPPDEQGCDDLFKHPGLLDFSHTVEPFVVFDLQGLQVTPLPLNHSKLTFGYLLETAHSRVA WLSDTAGLPEKTLKFLRNNQPQVMVIDCSHPPREDAPRSHCDLNTVLALNQVIRSPRVILTHISHQFDAWLMENALPSGF EAGFDGMEIGVA >Mature_251_residues SLTLTLTGTGGAQGVPAWGCECVACARARRSPQYRRQPCSGVVKFNDAITLIDAGLHDLADRWPPGSFQQFLLTHYHMDH VQGLFPLRWGVGDPIPVYGPPDEQGCDDLFKHPGLLDFSHTVEPFVVFDLQGLQVTPLPLNHSKLTFGYLLETAHSRVAW LSDTAGLPEKTLKFLRNNQPQVMVIDCSHPPREDAPRSHCDLNTVLALNQVIRSPRVILTHISHQFDAWLMENALPSGFE AGFDGMEIGVA
Specific function: Belongs to an operon involved in alkylphosphonate uptake and C-P lyase. Exact function not known [H]
COG id: COG1235
COG function: function code R; Metal-dependent hydrolases of the beta-lactamase superfamily I
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1790530, Length=252, Percent_Identity=97.6190476190476, Blast_Score=489, Evalue=1e-140,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001279 - InterPro: IPR017693 [H]
Pfam domain/function: PF00753 Lactamase_B [H]
EC number: NA
Molecular weight: Translated: 27871; Mature: 27740
Theoretical pI: Translated: 6.22; Mature: 6.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLTLTLTGTGGAQGVPAWGCECVACARARRSPQYRRQPCSGVVKFNDAITLIDAGLHDL CEEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCHHHCCCCCCEEEECCEEEEEHHCHHHH ADRWPPGSFQQFLLTHYHMDHVQGLFPLRWGVGDPIPVYGPPDEQGCDDLFKHPGLLDFS HHCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCCC HTVEPFVVFDLQGLQVTPLPLNHSKLTFGYLLETAHSRVAWLSDTAGLPEKTLKFLRNNQ CCCCCEEEEEECCCEEECCCCCCCCCHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHCCC PQVMVIDCSHPPREDAPRSHCDLNTVLALNQVIRSPRVILTHISHQFDAWLMENALPSGF CCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHCCCCCH EAGFDGMEIGVA HCCCCCEEECCC >Mature Secondary Structure SLTLTLTGTGGAQGVPAWGCECVACARARRSPQYRRQPCSGVVKFNDAITLIDAGLHDL EEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCHHHCCCCCCEEEECCEEEEEHHCHHHH ADRWPPGSFQQFLLTHYHMDHVQGLFPLRWGVGDPIPVYGPPDEQGCDDLFKHPGLLDFS HHCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCCC HTVEPFVVFDLQGLQVTPLPLNHSKLTFGYLLETAHSRVAWLSDTAGLPEKTLKFLRNNQ CCCCCEEEEEECCCEEECCCCCCCCCHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHCCC PQVMVIDCSHPPREDAPRSHCDLNTVLALNQVIRSPRVILTHISHQFDAWLMENALPSGF CCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHCCCCCH EAGFDGMEIGVA HCCCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2155230; 1840580; 7610040; 9278503 [H]