| Definition | Shigella boydii Sb227, complete genome. |
|---|---|
| Accession | NC_007613 |
| Length | 4,519,823 |
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The map label for this gene is yhjT
Identifier: 82545901
GI number: 82545901
Start: 3543640
End: 3543828
Strand: Direct
Name: yhjT
Synonym: SBO_3536
Alternate gene names: 82545901
Gene position: 3543640-3543828 (Clockwise)
Preceding gene: 82545900
Following gene: 82545902
Centisome position: 78.4
GC content: 48.15
Gene sequence:
>189_bases ATGACCATCAGCGATATCATTGAAATTATTGTCGTTTGCGCACTGATATTTTTCCCGCTGGGCTATCTGGCGCGGCACTC TTTGCGACGCATTCGCGACACCTTACGTTTGTTCTTTGCTAAACCTCGTTATGTTAAACCGGCCGGGACATTACGCCGCA CGGAAAAAGCCAGGGCAACCAAAAAATGA
Upstream 100 bases:
>100_bases GTTCTAAACCGGTCATCAATGCCGAGCACGATGGTCGCCACTGGCGACGAATACCAGAACCCATGCGACTGTTAGATGAT GCTGTGGAGCGCTCATCATG
Downstream 100 bases:
>100_bases CTCAATTTACGCAAAATACCGCCATGCCTTCTTCCCTCTGGCAATACTGGCGCGGCCTTTCCGGCTGGAACTTCTATTTT CTGGTTAAGTTCGGCCTGTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 62; Mature: 61
Protein sequence:
>62_residues MTISDIIEIIVVCALIFFPLGYLARHSLRRIRDTLRLFFAKPRYVKPAGTLRRTEKARATKK
Sequences:
>Translated_62_residues MTISDIIEIIVVCALIFFPLGYLARHSLRRIRDTLRLFFAKPRYVKPAGTLRRTEKARATKK >Mature_61_residues TISDIIEIIVVCALIFFPLGYLARHSLRRIRDTLRLFFAKPRYVKPAGTLRRTEKARATKK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI87082285, Length=62, Percent_Identity=100, Blast_Score=124, Evalue=1e-30,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): YHJT_ECOLI (P0ADJ5)
Other databases:
- EMBL: U00039 - EMBL: U00096 - EMBL: AP009048 - PIR: S47759 - RefSeq: AP_004257.1 - RefSeq: NP_417994.2 - STRING: P0ADJ5 - EnsemblBacteria: EBESCT00000003548 - EnsemblBacteria: EBESCT00000017004 - GeneID: 948059 - GenomeReviews: AP009048_GR - GenomeReviews: U00096_GR - KEGG: ecj:JW5663 - KEGG: eco:b3537 - EchoBASE: EB2173 - EcoGene: EG12264 - eggNOG: NOG13942 - GeneTree: EBGT00050000010302 - HOGENOM: HBG417170 - OMA: YQRRIRT - ProtClustDB: CLSK880711 - BioCyc: EcoCyc:EG12264-MONOMER - Genevestigator: P0ADJ5 - InterPro: IPR019995 - ProDom: PD053231 - TIGRFAMs: TIGR03493
Pfam domain/function: PF11120 DUF2636
EC number: NA
Molecular weight: Translated: 7233; Mature: 7102
Theoretical pI: Translated: 11.80; Mature: 11.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTISDIIEIIVVCALIFFPLGYLARHSLRRIRDTLRLFFAKPRYVKPAGTLRRTEKARAT CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCC KK CC >Mature Secondary Structure TISDIIEIIVVCALIFFPLGYLARHSLRRIRDTLRLFFAKPRYVKPAGTLRRTEKARAT CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCC KK CC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8041620; 9278503