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The map label for this gene is nlpD [H]

Identifier: 82545185

GI number: 82545185

Start: 2784526

End: 2785617

Strand: Direct

Name: nlpD [H]

Synonym: SBO_2778

Alternate gene names: 82545185

Gene position: 2784526-2785617 (Clockwise)

Preceding gene: 82545184

Following gene: 82545186

Centisome position: 61.61

GC content: 52.56

Gene sequence:

>1092_bases
ATGAGCGCGGGAAGCCCAAAATTCACCGTTCGCCGCATTGCGGCTTTGTCACTGGTTTCGCTATGGCTGGCAGGCTGTTC
TGACACTTCAAATCCACCGGCACCGGTCAGCTCCGTTAATGGCAATGCGCCTGCAAATACCAATTCTGGTATGTTGATTA
CGCCGCCGCCGAAAATGGGGACGACGTCTACAGCCCAGCAACCGCAAATCCAGCCAGTGCAGCCAGTAGCTCAGCAGCCG
GTACAGATGGAAAACGGACGCATCGTCTATAACCGTCAGTATGGGAACATTCCGAAAGGCAGTTATAGCGGCAGTACCTA
TACCGTGAAAAAAGGCGACACACTTTTCTATATCGCCTGGATTACTGGCAACGATTTCCGTGACCTTGCTCAGCGCAACA
ATATTCAGGCACCATACGCGCTGAACGTTGGTCAGACCTTGCAGGTGGGTAATGCTTCCGGTACGCCAATCACTGGCGGA
AATGCCATTACCCAGGCCGACGCAGCAGAGCAAGGAGTTGTGATCAAGCCTGCACAAAATTCCACCGTTGCTGTTGCGTC
GCAACCGACAATTACGTATTCTGAATCTTCGGGTGAACAGAGTGCTAACAAAATGTTGCCGAACAACAAGCCAGCTGCGA
CCACGGTCACAGCGCCTGTAACGGTACCAACAGCAAGCACAACCGAGCCAACTGTCAGCAGTACATCAACCAGTACGCCT
ATCTCCACCTGGCGCTGGCCGACTGAGGGCAAAGTGATCGAAACCTTTGGCGCTTCTGAGGGGGGCAACAAGGGGATTGA
TATCGCAGGCAGCAAAGGACAGGCAATTATCGCGACCGCAGATGGCCGCGTTGTTTATGCCGGTAACGCGCTGCGCGGCT
ACGGTAATCTGATTATCATCAAACATAATGATGATTACCTGAGTGCCTACGCCCATAACGACACAATGCTGGTCCGGGAA
CAACAAGAAGTGAAGGCGGGGCAAAAAATAGCAACCATGGGTAGCACCGGAACCAGTTCAACACGCTTGCATTTTGAAAT
TCGTTACAAGGGGAAATCCGTAAACCCGCTGCGTTATTTGCCGCAGCGATAA

Upstream 100 bases:

>100_bases
CGCAGGTCAGCGTATCGTGAACATCTTTTCCAGTGTTCAGTAGGGTGCCTTGCACGGTAATTATGTCACTGGTTATTAAC
CAATTTTTCCTGGGGGATAA

Downstream 100 bases:

>100_bases
ATCGGCGGAACCAGGCTTTTGCTTGAATGTTCCGTCAAGGGATCACGGGTAGGAGCCACCTTATGAGTCAGAATACGCTG
AAAGTTCATGATTTAAATGA

Product: lipoprotein NlpD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 363; Mature: 362

Protein sequence:

>363_residues
MSAGSPKFTVRRIAALSLVSLWLAGCSDTSNPPAPVSSVNGNAPANTNSGMLITPPPKMGTTSTAQQPQIQPVQPVAQQP
VQMENGRIVYNRQYGNIPKGSYSGSTYTVKKGDTLFYIAWITGNDFRDLAQRNNIQAPYALNVGQTLQVGNASGTPITGG
NAITQADAAEQGVVIKPAQNSTVAVASQPTITYSESSGEQSANKMLPNNKPAATTVTAPVTVPTASTTEPTVSSTSTSTP
ISTWRWPTEGKVIETFGASEGGNKGIDIAGSKGQAIIATADGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVRE
QQEVKAGQKIATMGSTGTSSTRLHFEIRYKGKSVNPLRYLPQR

Sequences:

>Translated_363_residues
MSAGSPKFTVRRIAALSLVSLWLAGCSDTSNPPAPVSSVNGNAPANTNSGMLITPPPKMGTTSTAQQPQIQPVQPVAQQP
VQMENGRIVYNRQYGNIPKGSYSGSTYTVKKGDTLFYIAWITGNDFRDLAQRNNIQAPYALNVGQTLQVGNASGTPITGG
NAITQADAAEQGVVIKPAQNSTVAVASQPTITYSESSGEQSANKMLPNNKPAATTVTAPVTVPTASTTEPTVSSTSTSTP
ISTWRWPTEGKVIETFGASEGGNKGIDIAGSKGQAIIATADGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVRE
QQEVKAGQKIATMGSTGTSSTRLHFEIRYKGKSVNPLRYLPQR
>Mature_362_residues
SAGSPKFTVRRIAALSLVSLWLAGCSDTSNPPAPVSSVNGNAPANTNSGMLITPPPKMGTTSTAQQPQIQPVQPVAQQPV
QMENGRIVYNRQYGNIPKGSYSGSTYTVKKGDTLFYIAWITGNDFRDLAQRNNIQAPYALNVGQTLQVGNASGTPITGGN
AITQADAAEQGVVIKPAQNSTVAVASQPTITYSESSGEQSANKMLPNNKPAATTVTAPVTVPTASTTEPTVSSTSTSTPI
STWRWPTEGKVIETFGASEGGNKGIDIAGSKGQAIIATADGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQ
QEVKAGQKIATMGSTGTSSTRLHFEIRYKGKSVNPLRYLPQR

Specific function: May be involved in stationary-phase survival [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=379, Percent_Identity=94.9868073878628, Blast_Score=630, Evalue=0.0,
Organism=Escherichia coli, GI87082174, Length=264, Percent_Identity=43.5606060606061, Blast_Score=207, Evalue=8e-55,
Organism=Escherichia coli, GI87082297, Length=115, Percent_Identity=39.1304347826087, Blast_Score=81, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 38305; Mature: 38174

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAGSPKFTVRRIAALSLVSLWLAGCSDTSNPPAPVSSVNGNAPANTNSGMLITPPPKMG
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCC
TTSTAQQPQIQPVQPVAQQPVQMENGRIVYNRQYGNIPKGSYSGSTYTVKKGDTLFYIAW
CCCCCCCCCCCCCCHHHHCCEEECCCEEEEEECCCCCCCCCCCCCEEEEECCCEEEEEEE
ITGNDFRDLAQRNNIQAPYALNVGQTLQVGNASGTPITGGNAITQADAAEQGVVIKPAQN
EECCCHHHHHHHCCCCCCEEECCCCEEEECCCCCCEECCCCCEEECCCCCCCEEEECCCC
STVAVASQPTITYSESSGEQSANKMLPNNKPAATTVTAPVTVPTASTTEPTVSSTSTSTP
CEEEEECCCEEEECCCCCCHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCC
ISTWRWPTEGKVIETFGASEGGNKGIDIAGSKGQAIIATADGRVVYAGNALRGYGNLIII
CCEEECCCCCCEEEEECCCCCCCCCEEEECCCCCEEEEECCCEEEEECCCCCCCCCEEEE
KHNDDYLSAYAHNDTMLVREQQEVKAGQKIATMGSTGTSSTRLHFEIRYKGKSVNPLRYL
EECCCEEEEEECCCEEEEECHHHHHCCCEEEEECCCCCCCEEEEEEEEECCCCCCHHHCC
PQR
CCC
>Mature Secondary Structure 
SAGSPKFTVRRIAALSLVSLWLAGCSDTSNPPAPVSSVNGNAPANTNSGMLITPPPKMG
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCC
TTSTAQQPQIQPVQPVAQQPVQMENGRIVYNRQYGNIPKGSYSGSTYTVKKGDTLFYIAW
CCCCCCCCCCCCCCHHHHCCEEECCCEEEEEECCCCCCCCCCCCCEEEEECCCEEEEEEE
ITGNDFRDLAQRNNIQAPYALNVGQTLQVGNASGTPITGGNAITQADAAEQGVVIKPAQN
EECCCHHHHHHHCCCCCCEEECCCCEEEECCCCCCEECCCCCEEECCCCCCCEEEECCCC
STVAVASQPTITYSESSGEQSANKMLPNNKPAATTVTAPVTVPTASTTEPTVSSTSTSTP
CEEEEECCCEEEECCCCCCHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCC
ISTWRWPTEGKVIETFGASEGGNKGIDIAGSKGQAIIATADGRVVYAGNALRGYGNLIII
CCEEECCCCCCEEEEECCCCCCCCCEEEECCCCCEEEEECCCEEEEECCCCCCCCCEEEE
KHNDDYLSAYAHNDTMLVREQQEVKAGQKIATMGSTGTSSTRLHFEIRYKGKSVNPLRYL
EECCCEEEEEECCCEEEEECHHHHHCCCEEEEECCCCCCCEEEEEEEEECCCCCCHHHCC
PQR
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8132457; 9278503; 8208244 [H]