Click here to switch to the map view.

The map label for this gene is ycbX [H]

Identifier: 82544729

GI number: 82544729

Start: 2272721

End: 2273830

Strand: Direct

Name: ycbX [H]

Synonym: SBO_2284

Alternate gene names: 82544729

Gene position: 2272721-2273830 (Clockwise)

Preceding gene: 82544722

Following gene: 161984905

Centisome position: 50.28

GC content: 50.54

Gene sequence:

>1110_bases
GTGGCGACATTAACCCGGCTTTTTATTCATCCTGTTAAATCGATGCGCGGCATTGGTCTTACACATGCTCTGGCTGATGT
CAGTGGTCTGGCCTTCGATCGCATCTTTATGATCACGGAACCTGACGGTACGTTTATTACCGCTCGCCAGTTTCCCCAGA
TGGTACGGTTTACTCCTTCACCTGTGCATGATGGCTTGCATCTCACCGCACCAGATGGCAGTAGCGCATATGTTCGTTTT
GCTGATTTCGCCACACAAGACGCACCAACCGAAGTTTGGGGCACACATTTTACCGCGCGAATTGCGCCAGACGCGATCAA
CAAATGGCTAAGTGGATTTTTCTCCCGCGAAGTGCAATTACGCTGGGTGGGGCCACAAATGACCCGGCGCGTGAAACGCC
ACAACACTGTACCTCTGTCATTTGCTGATGGCTATCCTTACCTTCTTGCTAACGAAGCCTCGTTACGTGATCTCCAACAA
CGTTGTCCGGCCAGTGTAAAAATGGAGCAATTCCGCCCCAATCTGGTGGTTTCCGGCGCGTCAGCCTGGGAAGAAGATCG
CTGGAAAGTGATTCGCATTGGTGATGTGGTGTTTGATGTGGTTAAACCTTGTAGCCGCTGTATTTTCACCACCGTCAGCC
CAGAAAAAGGGCAAAAACATCCGGCAGGCGAACCATTAAAAACATTGCAATCTTTCCGCACTGCCCAGGATAACGGCGAT
GTCGATTTTGGTCAGAATTTAATTGCCCGTAATAGCGGCGTGATTCGCGTTGGCGATGAGGTGGAAATTCTGGCAACGGC
TCCGGCAAAAATTTACGGCGCAGCTGCCGCTGATGATACCGCCAACATCACGCAACAACCGGACGCAAATGTAGATATTG
ACTGGCAGGGACAGGCATTTCGTGGAAATAACCAACAGGTGTTGCTGGAGCAATTAGAAAATCAGGGAATTCGTATCCCT
TATTCTTGCCGCGCGGGCATTTGTGGAAGTTGCCGTGTTCAGATTTTAGAAGGCGAAGTCTCGCCGCTGAAAAAATCAGC
AATGGGCGATGATGGCACCATTCTTTGCTGTAGCTGTGTACCGAAGACTGCCCTTAAGCTGACGCGTTAG

Upstream 100 bases:

>100_bases
AGCCTAATGGGACAGGCGCTAAGAAAATTGTTGCGCATTATAGCTAATAAGCGCGTCATGTCATAAAGTTGAGGGCTTAT
TTTCATTTGAGGACCGCACC

Downstream 100 bases:

>100_bases
ACTGCCTGTTCGAGGCTGAAGCTGTCAACATTCACCTGCGGTTTCAGCCTGTCGTTCATGATTTTAATGGCGTCGCCCAA
CTGCATCGCGCGACCCGCAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 369; Mature: 368

Protein sequence:

>369_residues
MATLTRLFIHPVKSMRGIGLTHALADVSGLAFDRIFMITEPDGTFITARQFPQMVRFTPSPVHDGLHLTAPDGSSAYVRF
ADFATQDAPTEVWGTHFTARIAPDAINKWLSGFFSREVQLRWVGPQMTRRVKRHNTVPLSFADGYPYLLANEASLRDLQQ
RCPASVKMEQFRPNLVVSGASAWEEDRWKVIRIGDVVFDVVKPCSRCIFTTVSPEKGQKHPAGEPLKTLQSFRTAQDNGD
VDFGQNLIARNSGVIRVGDEVEILATAPAKIYGAAAADDTANITQQPDANVDIDWQGQAFRGNNQQVLLEQLENQGIRIP
YSCRAGICGSCRVQILEGEVSPLKKSAMGDDGTILCCSCVPKTALKLTR

Sequences:

>Translated_369_residues
MATLTRLFIHPVKSMRGIGLTHALADVSGLAFDRIFMITEPDGTFITARQFPQMVRFTPSPVHDGLHLTAPDGSSAYVRF
ADFATQDAPTEVWGTHFTARIAPDAINKWLSGFFSREVQLRWVGPQMTRRVKRHNTVPLSFADGYPYLLANEASLRDLQQ
RCPASVKMEQFRPNLVVSGASAWEEDRWKVIRIGDVVFDVVKPCSRCIFTTVSPEKGQKHPAGEPLKTLQSFRTAQDNGD
VDFGQNLIARNSGVIRVGDEVEILATAPAKIYGAAAADDTANITQQPDANVDIDWQGQAFRGNNQQVLLEQLENQGIRIP
YSCRAGICGSCRVQILEGEVSPLKKSAMGDDGTILCCSCVPKTALKLTR
>Mature_368_residues
ATLTRLFIHPVKSMRGIGLTHALADVSGLAFDRIFMITEPDGTFITARQFPQMVRFTPSPVHDGLHLTAPDGSSAYVRFA
DFATQDAPTEVWGTHFTARIAPDAINKWLSGFFSREVQLRWVGPQMTRRVKRHNTVPLSFADGYPYLLANEASLRDLQQR
CPASVKMEQFRPNLVVSGASAWEEDRWKVIRIGDVVFDVVKPCSRCIFTTVSPEKGQKHPAGEPLKTLQSFRTAQDNGDV
DFGQNLIARNSGVIRVGDEVEILATAPAKIYGAAAADDTANITQQPDANVDIDWQGQAFRGNNQQVLLEQLENQGIRIPY
SCRAGICGSCRVQILEGEVSPLKKSAMGDDGTILCCSCVPKTALKLTR

Specific function: Unknown

COG id: COG3217

COG function: function code R; Uncharacterized Fe-S protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MOSC domain [H]

Homologues:

Organism=Homo sapiens, GI224600454, Length=289, Percent_Identity=32.8719723183391, Blast_Score=136, Evalue=3e-32,
Organism=Homo sapiens, GI31542713, Length=280, Percent_Identity=31.0714285714286, Blast_Score=122, Evalue=7e-28,
Organism=Homo sapiens, GI157388923, Length=241, Percent_Identity=24.4813278008299, Blast_Score=79, Evalue=7e-15,
Organism=Escherichia coli, GI1787179, Length=369, Percent_Identity=98.9159891598916, Blast_Score=760, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17540702, Length=279, Percent_Identity=30.4659498207885, Blast_Score=119, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI17561286, Length=258, Percent_Identity=31.0077519379845, Blast_Score=107, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI71990971, Length=261, Percent_Identity=30.6513409961686, Blast_Score=107, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI25147498, Length=238, Percent_Identity=27.3109243697479, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI45550400, Length=289, Percent_Identity=29.4117647058824, Blast_Score=106, Evalue=2e-23,
Organism=Drosophila melanogaster, GI17647607, Length=249, Percent_Identity=27.710843373494, Blast_Score=79, Evalue=6e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006058
- InterPro:   IPR012675
- InterPro:   IPR001041
- InterPro:   IPR005302
- InterPro:   IPR005303
- InterPro:   IPR011037 [H]

Pfam domain/function: PF00111 Fer2; PF03473 MOSC; PF03476 MOSC_N [H]

EC number: NA

Molecular weight: Translated: 40649; Mature: 40518

Theoretical pI: Translated: 7.71; Mature: 7.71

Prosite motif: PS00197 2FE2S_FER_1 ; PS51085 2FE2S_FER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATLTRLFIHPVKSMRGIGLTHALADVSGLAFDRIFMITEPDGTFITARQFPQMVRFTPS
CCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEEEEEECCCCCEEEHHHCCHHHCCCCC
PVHDGLHLTAPDGSSAYVRFADFATQDAPTEVWGTHFTARIAPDAINKWLSGFFSREVQL
CCCCCCEEECCCCCCEEEEEEECCCCCCCCHHHCCCEEEEECHHHHHHHHHHHHCCEEEE
RWVGPQMTRRVKRHNTVPLSFADGYPYLLANEASLRDLQQRCPASVKMEQFRPNLVVSGA
EEECHHHHHHHHHCCCCEEEECCCCCEEEECCHHHHHHHHHCCCCCCHHHCCCCEEEECC
SAWEEDRWKVIRIGDVVFDVVKPCSRCIFTTVSPEKGQKHPAGEPLKTLQSFRTAQDNGD
CCCCCCCEEEEEEHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCC
VDFGQNLIARNSGVIRVGDEVEILATAPAKIYGAAAADDTANITQQPDANVDIDWQGQAF
CCCCCHHHHCCCCEEEECCCEEEEEECCHHHEECCCCCCCCCCCCCCCCCEEEEECCCEE
RGNNQQVLLEQLENQGIRIPYSCRAGICGSCRVQILEGEVSPLKKSAMGDDGTILCCSCV
CCCCHHHHHHHHHCCCEEEEHHCCCCCCCCCEEEEEECCCCHHHHHHCCCCCCEEEECCC
PKTALKLTR
CCHHHCCCC
>Mature Secondary Structure 
ATLTRLFIHPVKSMRGIGLTHALADVSGLAFDRIFMITEPDGTFITARQFPQMVRFTPS
CHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEEEEEECCCCCEEEHHHCCHHHCCCCC
PVHDGLHLTAPDGSSAYVRFADFATQDAPTEVWGTHFTARIAPDAINKWLSGFFSREVQL
CCCCCCEEECCCCCCEEEEEEECCCCCCCCHHHCCCEEEEECHHHHHHHHHHHHCCEEEE
RWVGPQMTRRVKRHNTVPLSFADGYPYLLANEASLRDLQQRCPASVKMEQFRPNLVVSGA
EEECHHHHHHHHHCCCCEEEECCCCCEEEECCHHHHHHHHHCCCCCCHHHCCCCEEEECC
SAWEEDRWKVIRIGDVVFDVVKPCSRCIFTTVSPEKGQKHPAGEPLKTLQSFRTAQDNGD
CCCCCCCEEEEEEHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCC
VDFGQNLIARNSGVIRVGDEVEILATAPAKIYGAAAADDTANITQQPDANVDIDWQGQAF
CCCCCHHHHCCCCEEEECCCEEEEEECCHHHEECCCCCCCCCCCCCCCCCEEEEECCCEE
RGNNQQVLLEQLENQGIRIPYSCRAGICGSCRVQILEGEVSPLKKSAMGDDGTILCCSCV
CCCCHHHHHHHHHCCCEEEEHHCCCCCCCCCEEEEEECCCCHHHHHHCCCCCCEEEECCC
PKTALKLTR
CCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]