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The map label for this gene is ymcA [H]

Identifier: 82544692

GI number: 82544692

Start: 2232370

End: 2234466

Strand: Direct

Name: ymcA [H]

Synonym: SBO_2246

Alternate gene names: 82544692

Gene position: 2232370-2234466 (Clockwise)

Preceding gene: 82544691

Following gene: 82544693

Centisome position: 49.39

GC content: 51.79

Gene sequence:

>2097_bases
ATGAAGAAGAATTCTTATCTTTTAAGCTGCCTGGCCATTGCCGTCTCCAGTGCCTGTCATGCTGAAGTATTAACCTACCC
GGATCCGCTGGGTTCGTCGCAATCAGACTTTGGCGGCACAGGATTGTTGCAGATGCCAAATGCGCGCATCGCACCGGAAG
GTGAATTCAGCGTCAACTACCGGGATAACGATCAATACCGGTTCTACTCCACCTCCGTGGCGCTGTTCCCATGGCTGGAA
GGCACCATTCGTTATACGGATGTGCGCACACGCAAATATAGCCAGTGGGAAGATTTCAGCGGCGATCAGTCATACAAAGA
CAAATCATTCGATTTTAAACTTCGCCTGTGGGAAGAAGGTTACTGGCTACCGCAAGTGGCGTTTGGTAAACGTGATATTG
CTGGTACGGGTCTGTTTGACGGTGAGTATCTGGTGGCCAGCAAGCAAGCGGGGCCATTTGATTTCACCCTCGGGATGGCA
TGGGGCTACGCCGGTAATGCGGGCAATATTACCAACCCGTTTTGCCGGGTGAACGATAAATATTGTCATCGCGCAGAGTC
TCACGATGCGGGCGATATCAGCTTTAGCGATATCTTTCGTGGCCCGGCTTCCATCTTTGGCGGCATTGAGTATCAAACGC
CGTGGAATCCCCTGCGTCTGAAACTCGAATACGATGGAAACAATTACCAGAATGATTTCGCTGGCAAACTGCCTCAGGCA
AGCCATTTCAACGTCGGCGCAGTTTATCGCGCTGCCAGCTGGGCAGATCTCAACCTGAGTTATGAACGCGGTAACACGTT
GATGTTTGGCTTCACGTTACGGACCAATTTCAACGATCTGCGCCCTGCCCTGCGCGATACGCCAAAACCGGCATATCAAC
CTGCGCCTGAATCTGAAGGATTGCAGTACACCACAGTAGCGAACCAACTTACCGCGCTGAAGTACAACGCAGGTTTTGAA
GCACCGGAAATTCAGCTGCGCGATAAGACGCTGTATATGTCTGGTCAACAATACAAATACCGTGATTCTCGCGAAGCGGT
CGATCGTGCCAACCGGATTTTGGTGAATAACCTGCCGCAAGGCGTTGAGAAGATTAGCGTGACGCAAAAGCGCGAGCATA
TGGCGATGGTGACTACCGAAACCGACGTAGCCAGCCTGCGCAAACAGCTGGCTGGTACAGCGCCTGGTCAATCAGAGCAA
CTTCAACAACAACGTGTTGAAGCAGAAGATCTTTCTGCCTTTGGTCGGGGCTACCGTATTCGTGAAGATCGCTTTAGCTA
CTCTTTCAACCCAACACTTTCACAGTCGCTGGGCGGCCCGGAAGATTTCTATATGTTCCAGCTGGGGCTGATGTCCAGTG
CCCGCTACTGGTTTACCGACCACCTGCTGCTTGATGGCGGTATTTTCACCAATATTTACAACAACTACGACAAGTTTAAG
TCTTCGCTGTTGCCCGCGGACTCTACCCTGCCCCGCGTGCGCACGCATATCCGTGATTACGTTCGCAATGACGTTTATCT
CAACAACTTGCAGGCGAACTACTTTGCCGACTTAGGCAATGGTTTCTATGGCCAGGTGTATGGCGGTTATCTGGAAACGA
TGTACGCCGGTGTCGGTTCCGAGCTGCTTTATCGCCCGCTAGATGCCAGCTGGGCGCTGGGTGTGGACGTTAACTACGTG
AAGCAACGTGACTGGGACAACATGATGCGCTTCACCGATTATTCCACGCCAACTGGTTTCGTGACGGCTTACTGGAACCC
GCCGACGCTCAATGGCGTACTGATGAAACTTAGCGTTGGGCAATATCTGGCAAAAGATAAAGGAGCAACGATCGACGTCG
CCAAACGCTTTGACAGCGGCGTGGCGGTAGGGGTATGGGCGGCAATCAGTAACGTATCTAAAGATGACTACGGCGAAGGC
GGCTTTAGTAAAGGTTTTTATATCTCGATTCCATTCGACTTGATGACCATTGGACCTAACCGCAACCGCGCGGTGGTTTC
GTGGACACCATTGACGCGTGATGGTGGACAAATGCTGTCACGCAAATACCAGCTCTATCCAATGACGGCAGAGCGAGAAG
TACCGGTTGGACAATAA

Upstream 100 bases:

>100_bases
GCCAGCTTTGGTTGGGCTTTTCTGCGCATGTACTGCCCGAAAAATATGCTGATTTAAATGACCAGATTGTGTCTGTTTTA
ACGCAACGTGTTCCTGACTG

Downstream 100 bases:

>100_bases
CCTGACGTAATTCATAACATTACATTGACTGATAAATATAAACCAATGAAAAAGAACATTTTTAAGTTTTCGGTACTGAC
ATTGGCTGTTCTGTCTTTGA

Product: hypothetical protein

Products: NA

Alternate protein names: Group 4 capsule protein D homolog [H]

Number of amino acids: Translated: 698; Mature: 698

Protein sequence:

>698_residues
MKKNSYLLSCLAIAVSSACHAEVLTYPDPLGSSQSDFGGTGLLQMPNARIAPEGEFSVNYRDNDQYRFYSTSVALFPWLE
GTIRYTDVRTRKYSQWEDFSGDQSYKDKSFDFKLRLWEEGYWLPQVAFGKRDIAGTGLFDGEYLVASKQAGPFDFTLGMA
WGYAGNAGNITNPFCRVNDKYCHRAESHDAGDISFSDIFRGPASIFGGIEYQTPWNPLRLKLEYDGNNYQNDFAGKLPQA
SHFNVGAVYRAASWADLNLSYERGNTLMFGFTLRTNFNDLRPALRDTPKPAYQPAPESEGLQYTTVANQLTALKYNAGFE
APEIQLRDKTLYMSGQQYKYRDSREAVDRANRILVNNLPQGVEKISVTQKREHMAMVTTETDVASLRKQLAGTAPGQSEQ
LQQQRVEAEDLSAFGRGYRIREDRFSYSFNPTLSQSLGGPEDFYMFQLGLMSSARYWFTDHLLLDGGIFTNIYNNYDKFK
SSLLPADSTLPRVRTHIRDYVRNDVYLNNLQANYFADLGNGFYGQVYGGYLETMYAGVGSELLYRPLDASWALGVDVNYV
KQRDWDNMMRFTDYSTPTGFVTAYWNPPTLNGVLMKLSVGQYLAKDKGATIDVAKRFDSGVAVGVWAAISNVSKDDYGEG
GFSKGFYISIPFDLMTIGPNRNRAVVSWTPLTRDGGQMLSRKYQLYPMTAEREVPVGQ

Sequences:

>Translated_698_residues
MKKNSYLLSCLAIAVSSACHAEVLTYPDPLGSSQSDFGGTGLLQMPNARIAPEGEFSVNYRDNDQYRFYSTSVALFPWLE
GTIRYTDVRTRKYSQWEDFSGDQSYKDKSFDFKLRLWEEGYWLPQVAFGKRDIAGTGLFDGEYLVASKQAGPFDFTLGMA
WGYAGNAGNITNPFCRVNDKYCHRAESHDAGDISFSDIFRGPASIFGGIEYQTPWNPLRLKLEYDGNNYQNDFAGKLPQA
SHFNVGAVYRAASWADLNLSYERGNTLMFGFTLRTNFNDLRPALRDTPKPAYQPAPESEGLQYTTVANQLTALKYNAGFE
APEIQLRDKTLYMSGQQYKYRDSREAVDRANRILVNNLPQGVEKISVTQKREHMAMVTTETDVASLRKQLAGTAPGQSEQ
LQQQRVEAEDLSAFGRGYRIREDRFSYSFNPTLSQSLGGPEDFYMFQLGLMSSARYWFTDHLLLDGGIFTNIYNNYDKFK
SSLLPADSTLPRVRTHIRDYVRNDVYLNNLQANYFADLGNGFYGQVYGGYLETMYAGVGSELLYRPLDASWALGVDVNYV
KQRDWDNMMRFTDYSTPTGFVTAYWNPPTLNGVLMKLSVGQYLAKDKGATIDVAKRFDSGVAVGVWAAISNVSKDDYGEG
GFSKGFYISIPFDLMTIGPNRNRAVVSWTPLTRDGGQMLSRKYQLYPMTAEREVPVGQ
>Mature_698_residues
MKKNSYLLSCLAIAVSSACHAEVLTYPDPLGSSQSDFGGTGLLQMPNARIAPEGEFSVNYRDNDQYRFYSTSVALFPWLE
GTIRYTDVRTRKYSQWEDFSGDQSYKDKSFDFKLRLWEEGYWLPQVAFGKRDIAGTGLFDGEYLVASKQAGPFDFTLGMA
WGYAGNAGNITNPFCRVNDKYCHRAESHDAGDISFSDIFRGPASIFGGIEYQTPWNPLRLKLEYDGNNYQNDFAGKLPQA
SHFNVGAVYRAASWADLNLSYERGNTLMFGFTLRTNFNDLRPALRDTPKPAYQPAPESEGLQYTTVANQLTALKYNAGFE
APEIQLRDKTLYMSGQQYKYRDSREAVDRANRILVNNLPQGVEKISVTQKREHMAMVTTETDVASLRKQLAGTAPGQSEQ
LQQQRVEAEDLSAFGRGYRIREDRFSYSFNPTLSQSLGGPEDFYMFQLGLMSSARYWFTDHLLLDGGIFTNIYNNYDKFK
SSLLPADSTLPRVRTHIRDYVRNDVYLNNLQANYFADLGNGFYGQVYGGYLETMYAGVGSELLYRPLDASWALGVDVNYV
KQRDWDNMMRFTDYSTPTGFVTAYWNPPTLNGVLMKLSVGQYLAKDKGATIDVAKRFDSGVAVGVWAAISNVSKDDYGEG
GFSKGFYISIPFDLMTIGPNRNRAVVSWTPLTRDGGQMLSRKYQLYPMTAEREVPVGQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787219, Length=698, Percent_Identity=99.4269340974212, Blast_Score=1437, Evalue=0.0,
Organism=Escherichia coli, GI1790461, Length=696, Percent_Identity=64.367816091954, Blast_Score=949, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010344 [H]

Pfam domain/function: PF06082 DUF940 [H]

EC number: NA

Molecular weight: Translated: 78744; Mature: 78744

Theoretical pI: Translated: 6.01; Mature: 6.01

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKNSYLLSCLAIAVSSACHAEVLTYPDPLGSSQSDFGGTGLLQMPNARIAPEGEFSVNY
CCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEE
RDNDQYRFYSTSVALFPWLEGTIRYTDVRTRKYSQWEDFSGDQSYKDKSFDFKLRLWEEG
CCCCCEEEEECCEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCC
YWLPQVAFGKRDIAGTGLFDGEYLVASKQAGPFDFTLGMAWGYAGNAGNITNPFCRVNDK
CCCCEECCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEECCCCCCCCCCCCEEECCHH
YCHRAESHDAGDISFSDIFRGPASIFGGIEYQTPWNPLRLKLEYDGNNYQNDFAGKLPQA
HHHCCCCCCCCCCCHHHHHCCHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCC
SHFNVGAVYRAASWADLNLSYERGNTLMFGFTLRTNFNDLRPALRDTPKPAYQPAPESEG
CCCCCCEEEEECCEEEEEEEEECCCEEEEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCC
LQYTTVANQLTALKYNAGFEAPEIQLRDKTLYMSGQQYKYRDSREAVDRANRILVNNLPQ
EEEEEHHCCEEEEEECCCCCCCCEEEECEEEEECCCCCCCCCHHHHHHHHCEEEECCCCH
GVEKISVTQKREHMAMVTTETDVASLRKQLAGTAPGQSEQLQQQRVEAEDLSAFGRGYRI
HHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHCCCCEE
REDRFSYSFNPTLSQSLGGPEDFYMFQLGLMSSARYWFTDHLLLDGGIFTNIYNNYDKFK
ECCCCCEECCCCHHHHCCCCCCEEEEEEEHHCCCCEEEEEEEEECCCCHHHHHHHHHHHH
SSLLPADSTLPRVRTHIRDYVRNDVYLNNLQANYFADLGNGFYGQVYGGYLETMYAGVGS
HHCCCCCCCHHHHHHHHHHHHHCCEEEECCCCHHHHHCCCCEEEHHHHHHHHHHHHCCCH
ELLYRPLDASWALGVDVNYVKQRDWDNMMRFTDYSTPTGFVTAYWNPPTLNGVLMKLSVG
HHHCCCCCCCEEECCCCHHHHHCCHHHHHHEECCCCCCCEEEEEECCCCCCCEEEEEEHH
QYLAKDKGATIDVAKRFDSGVAVGVWAAISNVSKDDYGEGGFSKGFYISIPFDLMTIGPN
HHHHHCCCCEEEHHHHCCCCCEEEHHHHHHCCCCCCCCCCCCCCCEEEEECEEEEEECCC
RNRAVVSWTPLTRDGGQMLSRKYQLYPMTAEREVPVGQ
CCEEEEEECCCCCCCHHHHHCEEEEEECCCCCCCCCCC
>Mature Secondary Structure
MKKNSYLLSCLAIAVSSACHAEVLTYPDPLGSSQSDFGGTGLLQMPNARIAPEGEFSVNY
CCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEE
RDNDQYRFYSTSVALFPWLEGTIRYTDVRTRKYSQWEDFSGDQSYKDKSFDFKLRLWEEG
CCCCCEEEEECCEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCC
YWLPQVAFGKRDIAGTGLFDGEYLVASKQAGPFDFTLGMAWGYAGNAGNITNPFCRVNDK
CCCCEECCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEECCCCCCCCCCCCEEECCHH
YCHRAESHDAGDISFSDIFRGPASIFGGIEYQTPWNPLRLKLEYDGNNYQNDFAGKLPQA
HHHCCCCCCCCCCCHHHHHCCHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCC
SHFNVGAVYRAASWADLNLSYERGNTLMFGFTLRTNFNDLRPALRDTPKPAYQPAPESEG
CCCCCCEEEEECCEEEEEEEEECCCEEEEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCC
LQYTTVANQLTALKYNAGFEAPEIQLRDKTLYMSGQQYKYRDSREAVDRANRILVNNLPQ
EEEEEHHCCEEEEEECCCCCCCCEEEECEEEEECCCCCCCCCHHHHHHHHCEEEECCCCH
GVEKISVTQKREHMAMVTTETDVASLRKQLAGTAPGQSEQLQQQRVEAEDLSAFGRGYRI
HHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHCCCCEE
REDRFSYSFNPTLSQSLGGPEDFYMFQLGLMSSARYWFTDHLLLDGGIFTNIYNNYDKFK
ECCCCCEECCCCHHHHCCCCCCEEEEEEEHHCCCCEEEEEEEEECCCCHHHHHHHHHHHH
SSLLPADSTLPRVRTHIRDYVRNDVYLNNLQANYFADLGNGFYGQVYGGYLETMYAGVGS
HHCCCCCCCHHHHHHHHHHHHHCCEEEECCCCHHHHHCCCCEEEHHHHHHHHHHHHCCCH
ELLYRPLDASWALGVDVNYVKQRDWDNMMRFTDYSTPTGFVTAYWNPPTLNGVLMKLSVG
HHHCCCCCCCEEECCCCHHHHHCCHHHHHHEECCCCCCCEEEEEECCCCCCCEEEEEEHH
QYLAKDKGATIDVAKRFDSGVAVGVWAAISNVSKDDYGEGGFSKGFYISIPFDLMTIGPN
HHHHHCCCCEEEHHHHCCCCCEEEHHHHHHCCCCCCCCCCCCCCCEEEEECEEEEEECCC
RNRAVVSWTPLTRDGGQMLSRKYQLYPMTAEREVPVGQ
CCEEEEEECCCCCCCHHHHHCEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]