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The map label for this gene is ycaK

Identifier: 82544637

GI number: 82544637

Start: 2163399

End: 2163989

Strand: Direct

Name: ycaK

Synonym: SBO_2185

Alternate gene names: 82544637

Gene position: 2163399-2163989 (Clockwise)

Preceding gene: 82544633

Following gene: 82544639

Centisome position: 47.86

GC content: 42.81

Gene sequence:

>591_bases
ATGCAGTCTGAACGTATTTATTTGGTATGGGCCCATCCTCGTCATGATTCATTGACCGCACATATTGCTGATGCGATCCA
TCAGCGGGCAATGGAGCGGAAAATACAGGTGACGGAACTCGATTTATATCGGCGTAATTTCAACCCAGTGATGACGCCGG
AAGATGAACCAGACTGGAAGAATATGGATAAACGTTATTCTCCAGAGGTTCATCAGCTTTATTCAGAGCTGCTTGAACAT
GACACGTTAGTGGTGGTTTTTCCTCTCTGGTGGTACAGCTTCCCGGCAATGCTAAAAGGATATATTGACAGAGTATGGAA
TAATGGGCTGGCTTATGGAGATGGGCACAAATTACCATTCAATAAAGTTCGTTGGGTGGCGCTGGTTGGAGGAGACAAAG
AATCATTTGTCCAGATGGGCTGGGAAAAAAATATAAGCGATTATTTGAAAAATATGTGCAGTTATCTTGGTATTGAAGAT
GCCGATGTCACTTTCTTGTGTAATACAGTGGTATTCGATGGGGAAGAACTTCATGCGAGCTATTATCAGTCGTTATTATC
TCAGGTACGGGATATGGTAGATGCACTATAA

Upstream 100 bases:

>100_bases
TTAGTGAAAATCCTTCATTAACTCATCCTGAATCATCACGTTTACAGGATTATGCCGCCTGCGTAAAGTGCGCTCCAGAA
CTTAACGTGGAGGTAAAATT

Downstream 100 bases:

>100_bases
AGGTAATGCTGCCAACTTACTGATTTAGTGTATGATGGTGATTTTAAGGTGCTTGCGTGGCTTCCATTTCCATCAGATGT
CCTTCCTGCTCCGCTACTGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 196; Mature: 196

Protein sequence:

>196_residues
MQSERIYLVWAHPRHDSLTAHIADAIHQRAMERKIQVTELDLYRRNFNPVMTPEDEPDWKNMDKRYSPEVHQLYSELLEH
DTLVVVFPLWWYSFPAMLKGYIDRVWNNGLAYGDGHKLPFNKVRWVALVGGDKESFVQMGWEKNISDYLKNMCSYLGIED
ADVTFLCNTVVFDGEELHASYYQSLLSQVRDMVDAL

Sequences:

>Translated_196_residues
MQSERIYLVWAHPRHDSLTAHIADAIHQRAMERKIQVTELDLYRRNFNPVMTPEDEPDWKNMDKRYSPEVHQLYSELLEH
DTLVVVFPLWWYSFPAMLKGYIDRVWNNGLAYGDGHKLPFNKVRWVALVGGDKESFVQMGWEKNISDYLKNMCSYLGIED
ADVTFLCNTVVFDGEELHASYYQSLLSQVRDMVDAL
>Mature_196_residues
MQSERIYLVWAHPRHDSLTAHIADAIHQRAMERKIQVTELDLYRRNFNPVMTPEDEPDWKNMDKRYSPEVHQLYSELLEH
DTLVVVFPLWWYSFPAMLKGYIDRVWNNGLAYGDGHKLPFNKVRWVALVGGDKESFVQMGWEKNISDYLKNMCSYLGIED
ADVTFLCNTVVFDGEELHASYYQSLLSQVRDMVDAL

Specific function: Unknown

COG id: COG2249

COG function: function code R; Putative NADPH-quinone reductase (modulator of drug activity B)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the NAD(P)H dehydrogenase (quinone) family

Homologues:

Organism=Escherichia coli, GI1787129, Length=196, Percent_Identity=100, Blast_Score=411, Evalue=1e-116,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YCAK_ECOLI (P43340)

Other databases:

- EMBL:   U00096
- EMBL:   AP009048
- EMBL:   X08035
- PIR:   D64829
- RefSeq:   AP_001531.1
- RefSeq:   NP_415421.1
- ProteinModelPortal:   P43340
- STRING:   P43340
- EnsemblBacteria:   EBESCT00000004681
- EnsemblBacteria:   EBESCT00000015014
- GeneID:   945520
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW0884
- KEGG:   eco:b0901
- EchoBASE:   EB2564
- EcoGene:   EG12702
- eggNOG:   COG2249
- GeneTree:   EBGT00050000010020
- HOGENOM:   HBG532247
- OMA:   NNGFAYG
- ProtClustDB:   PRK09739
- BioCyc:   EcoCyc:EG12702-MONOMER
- Genevestigator:   P43340
- InterPro:   IPR003680

Pfam domain/function: PF02525 Flavodoxin_2

EC number: 1.6.99.- [C]

Molecular weight: Translated: 23036; Mature: 23036

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSERIYLVWAHPRHDSLTAHIADAIHQRAMERKIQVTELDLYRRNFNPVMTPEDEPDWK
CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCC
NMDKRYSPEVHQLYSELLEHDTLVVVFPLWWYSFPAMLKGYIDRVWNNGLAYGDGHKLPF
CCCCCCCCHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
NKVRWVALVGGDKESFVQMGWEKNISDYLKNMCSYLGIEDADVTFLCNTVVFDGEELHAS
CCEEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCEEEEEHHEECCHHHHHH
YYQSLLSQVRDMVDAL
HHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQSERIYLVWAHPRHDSLTAHIADAIHQRAMERKIQVTELDLYRRNFNPVMTPEDEPDWK
CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCC
NMDKRYSPEVHQLYSELLEHDTLVVVFPLWWYSFPAMLKGYIDRVWNNGLAYGDGHKLPF
CCCCCCCCHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
NKVRWVALVGGDKESFVQMGWEKNISDYLKNMCSYLGIEDADVTFLCNTVVFDGEELHAS
CCEEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCEEEEEHHEECCHHHHHH
YYQSLLSQVRDMVDAL
HHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 3053170; 7567469