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The map label for this gene is ycfU [H]

Identifier: 82544416

GI number: 82544416

Start: 1917912

End: 1919111

Strand: Reverse

Name: ycfU [H]

Synonym: SBO_1945

Alternate gene names: 82544416

Gene position: 1919111-1917912 (Counterclockwise)

Preceding gene: 82544420

Following gene: 161984922

Centisome position: 42.46

GC content: 53.83

Gene sequence:

>1200_bases
ATGTACCAACCTGTCGCTCTATTTATTGGCCTGCGTTACATGCGTGGGCGTGCAGCGGATCGCTTCGGTCGTTTCGTCTC
CTGGCTTTCTACCATCGGCATTACCCTCGGGGTGATGGCGCTGGTCACAGTATTGTCAGTGATGAACGGCTTTGAGCGCG
AGCTGCAAAACAACATCCTTGGCCTGATGCCACAGGCAATTCTCTCTTCTGAGCATGGCTCTATTAACCCGCAGCAACTC
CCGGAAACGGCAGTCAAACTGGACGGCGTTAATCGCGTCGCACCTATTACTACCGGTGATGTGGTACTGCAAAGCGCGCG
CAGCGTGGCGGTCGGGGTGATGCTGGGTATCGATCCGGCGCAAAAAGATCCACTAACGCCGTATCTGGTCAATGTGAAAC
AAACTGACCTCGAGCCGGGGAAATATAATGTCATCCTCGGCGAACAACTTGCCTCACAGCTAGGCGTTAATCGCGGTGAT
CAAATCCGCATGATGGTACCATCTGCCAGCCAGTTCACGCCGATGGGGCGTATTCCAAGTCAGCGCCTGTTCAATGTGAT
TGGCACTTTCGCCGCCAACAGTGAAGTCGATGGCAATGAAATGCTGGTGAATATTGAGGATGCCTCGCGTCTGATGCGTT
ATCCGGCAGGCAATATTACCGGCTGGCGTTTGTGGCTGGATGAGCCGCTGAAAGTCGACTCATTAAGTCAGCAAAAACTG
CCTGAAGACAGCAAATGGCAGGACTGGCGTGATCGTAAAGGCGAGTTGTTCCAGGCCGTACGCATGGAAAAAAATATGAT
GGGTTTACTGCTGAGCCTGATTGTCGCCGTTGCGGCGTTTAACATTATTACCTCGCTGGGGCTGATGGTGATGGAGAAGC
AGGGCGAAGTAGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGATCTTTATGGTGCAAGGGGCCAGC
GCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCACTGCTTGCCAGCCAGTTAAATAATCTGATGCCAATAAT
CGGCGTCCTGCTTGATGGCGCGGCGCTGCCGATGGCTATCGAACCTTTACAGGTCATTGTTATTGCGCTGGTGGCGATGG
CTATCGCGCTGCTGTCTACGCTTTACCCTTCATGGCGCGCTGCCGCCACACAACCCGCTGAGGCTTTACGTTATGAATAA

Upstream 100 bases:

>100_bases
TTTTCAGATTAGCCCTGACGATCACTTACAGTTCAGACGTTTACCCATCTTGCTTTCGCTTATATACTCGTGTCTTTGCT
ACAGCAACCAGACGGATTTC

Downstream 100 bases:

>100_bases
GATCCTGTTGCAATGCGACAACCTGTGCAAACGCTATCAGGAAGGCAGTGTGCAAACCGATGTACTGCACAATGTCAGTT
TCAGCGTCGGCGAAGGTGAA

Product: outer membrane-specific lipoprotein transporter subunit LolC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 399; Mature: 399

Protein sequence:

>399_residues
MYQPVALFIGLRYMRGRAADRFGRFVSWLSTIGITLGVMALVTVLSVMNGFERELQNNILGLMPQAILSSEHGSINPQQL
PETAVKLDGVNRVAPITTGDVVLQSARSVAVGVMLGIDPAQKDPLTPYLVNVKQTDLEPGKYNVILGEQLASQLGVNRGD
QIRMMVPSASQFTPMGRIPSQRLFNVIGTFAANSEVDGNEMLVNIEDASRLMRYPAGNITGWRLWLDEPLKVDSLSQQKL
PEDSKWQDWRDRKGELFQAVRMEKNMMGLLLSLIVAVAAFNIITSLGLMVMEKQGEVAILQTQGLTPRQIMMIFMVQGAS
AGIIGAILGAALGALLASQLNNLMPIIGVLLDGAALPMAIEPLQVIVIALVAMAIALLSTLYPSWRAAATQPAEALRYE

Sequences:

>Translated_399_residues
MYQPVALFIGLRYMRGRAADRFGRFVSWLSTIGITLGVMALVTVLSVMNGFERELQNNILGLMPQAILSSEHGSINPQQL
PETAVKLDGVNRVAPITTGDVVLQSARSVAVGVMLGIDPAQKDPLTPYLVNVKQTDLEPGKYNVILGEQLASQLGVNRGD
QIRMMVPSASQFTPMGRIPSQRLFNVIGTFAANSEVDGNEMLVNIEDASRLMRYPAGNITGWRLWLDEPLKVDSLSQQKL
PEDSKWQDWRDRKGELFQAVRMEKNMMGLLLSLIVAVAAFNIITSLGLMVMEKQGEVAILQTQGLTPRQIMMIFMVQGAS
AGIIGAILGAALGALLASQLNNLMPIIGVLLDGAALPMAIEPLQVIVIALVAMAIALLSTLYPSWRAAATQPAEALRYE
>Mature_399_residues
MYQPVALFIGLRYMRGRAADRFGRFVSWLSTIGITLGVMALVTVLSVMNGFERELQNNILGLMPQAILSSEHGSINPQQL
PETAVKLDGVNRVAPITTGDVVLQSARSVAVGVMLGIDPAQKDPLTPYLVNVKQTDLEPGKYNVILGEQLASQLGVNRGD
QIRMMVPSASQFTPMGRIPSQRLFNVIGTFAANSEVDGNEMLVNIEDASRLMRYPAGNITGWRLWLDEPLKVDSLSQQKL
PEDSKWQDWRDRKGELFQAVRMEKNMMGLLLSLIVAVAAFNIITSLGLMVMEKQGEVAILQTQGLTPRQIMMIFMVQGAS
AGIIGAILGAALGALLASQLNNLMPIIGVLLDGAALPMAIEPLQVIVIALVAMAIALLSTLYPSWRAAATQPAEALRYE

Specific function: Part of an ATP-dependent transport system lolCDE responsible for the release of lipoproteins targeted to the outer membrane from the inner membrane. Such a release is dependent of the sorting-signal (absence of an Asp at position 2 of the mature lipoprote

COG id: COG4591

COG function: function code M; ABC-type transport system, involved in lipoprotein release, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ABC-4 integral membrane protein family. LolC/E subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787360, Length=399, Percent_Identity=98.4962406015038, Blast_Score=785, Evalue=0.0,
Organism=Escherichia coli, GI1787362, Length=415, Percent_Identity=26.9879518072289, Blast_Score=139, Evalue=4e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003838
- InterPro:   IPR011925 [H]

Pfam domain/function: PF02687 FtsX [H]

EC number: NA

Molecular weight: Translated: 43352; Mature: 43352

Theoretical pI: Translated: 5.49; Mature: 5.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.5 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYQPVALFIGLRYMRGRAADRFGRFVSWLSTIGITLGVMALVTVLSVMNGFERELQNNIL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLMPQAILSSEHGSINPQQLPETAVKLDGVNRVAPITTGDVVLQSARSVAVGVMLGIDPA
HHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHEECCCCC
QKDPLTPYLVNVKQTDLEPGKYNVILGEQLASQLGVNRGDQIRMMVPSASQFTPMGRIPS
CCCCCCCEEEECCCCCCCCCCEEEEEHHHHHHHHCCCCCCEEEEEECCCHHCCCCCCCCH
QRLFNVIGTFAANSEVDGNEMLVNIEDASRLMRYPAGNITGWRLWLDEPLKVDSLSQQKL
HHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHCCCCCCCEEEEEECCCCCCCCCHHHCC
PEDSKWQDWRDRKGELFQAVRMEKNMMGLLLSLIVAVAAFNIITSLGLMVMEKQGEVAIL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEE
QTQGLTPRQIMMIFMVQGASAGIIGAILGAALGALLASQLNNLMPIIGVLLDGAALPMAI
EECCCCHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
EPLQVIVIALVAMAIALLSTLYPSWRAAATQPAEALRYE
HHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHCCC
>Mature Secondary Structure
MYQPVALFIGLRYMRGRAADRFGRFVSWLSTIGITLGVMALVTVLSVMNGFERELQNNIL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLMPQAILSSEHGSINPQQLPETAVKLDGVNRVAPITTGDVVLQSARSVAVGVMLGIDPA
HHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHEECCCCC
QKDPLTPYLVNVKQTDLEPGKYNVILGEQLASQLGVNRGDQIRMMVPSASQFTPMGRIPS
CCCCCCCEEEECCCCCCCCCCEEEEEHHHHHHHHCCCCCCEEEEEECCCHHCCCCCCCCH
QRLFNVIGTFAANSEVDGNEMLVNIEDASRLMRYPAGNITGWRLWLDEPLKVDSLSQQKL
HHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHCCCCCCCEEEEEECCCCCCCCCHHHCC
PEDSKWQDWRDRKGELFQAVRMEKNMMGLLLSLIVAVAAFNIITSLGLMVMEKQGEVAIL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEE
QTQGLTPRQIMMIFMVQGASAGIIGAILGAALGALLASQLNNLMPIIGVLLDGAALPMAI
EECCCCHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
EPLQVIVIALVAMAIALLSTLYPSWRAAATQPAEALRYE
HHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]