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The map label for this gene is ydeH [H]

Identifier: 82544100

GI number: 82544100

Start: 1598070

End: 1598333

Strand: Direct

Name: ydeH [H]

Synonym: SBO_1609

Alternate gene names: 82544100

Gene position: 1598070-1598333 (Clockwise)

Preceding gene: 82544099

Following gene: 82544102

Centisome position: 35.36

GC content: 45.83

Gene sequence:

>264_bases
TTGCCAGTACACCTCAAAGCGGCTAATGATGAAGAAGCATGTCGTGCAGGTGTCAGAATTTGCCAGTTAGTCGATAACCA
TGCCATCACACATTCTGAAGGGCATATCAACATTACCGTGACAGCAGGTGTCAGTCGCGCATTTCCTGAAGAGCCTCTGG
ATGTGGTCATTGGAAGAGCAGACCGGGCAATGTATGAGGGTAAGCAAACGGGAAGAAATCGCTGTATGTTTATTGACGAA
CAAAATGTGATTAACCGAGTTTAA

Upstream 100 bases:

>100_bases
GCGTCGTCACTCTCGTCTGGGGAATATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGGCTGCTTAAAAAAAGA
ACAAATGATAGTGTCCGCTA

Downstream 100 bases:

>100_bases
GCTCCGTTTAACATTCATTGAGAAAACTGATGCTACTGTGTCAACGATTCGTTATCAGTGCAGGAAAATGCCTGTTAGCG
TAAAAGCAAAACACAAATCT

Product: hypothetical protein

Products: NA

Alternate protein names: DGC [H]

Number of amino acids: Translated: 87; Mature: 86

Protein sequence:

>87_residues
MPVHLKAANDEEACRAGVRICQLVDNHAITHSEGHINITVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCMFIDE
QNVINRV

Sequences:

>Translated_87_residues
MPVHLKAANDEEACRAGVRICQLVDNHAITHSEGHINITVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCMFIDE
QNVINRV
>Mature_86_residues
PVHLKAANDEEACRAGVRICQLVDNHAITHSEGHINITVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCMFIDEQ
NVINRV

Specific function: A diguanylate cyclase, overexpression leads to a strong repression of swimming; swimming returnes to normal when residues 206-207 are both mutated to Ala. Overexpression also leads to a reduction in flagellar abundance and a 20-fold increase in c-di- GMP

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI1787816, Length=83, Percent_Identity=98.7951807228916, Blast_Score=173, Evalue=2e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160 [H]

Pfam domain/function: PF00990 GGDEF [H]

EC number: =2.7.7.65 [H]

Molecular weight: Translated: 9657; Mature: 9526

Theoretical pI: Translated: 6.50; Mature: 6.50

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVHLKAANDEEACRAGVRICQLVDNHAITHSEGHINITVTAGVSRAFPEEPLDVVIGRA
CCEEECCCCCHHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCCCCCCCHHEEECCC
DRAMYEGKQTGRNRCMFIDEQNVINRV
CHHHHCCCCCCCCEEEEEECCHHCCCC
>Mature Secondary Structure 
PVHLKAANDEEACRAGVRICQLVDNHAITHSEGHINITVTAGVSRAFPEEPLDVVIGRA
CEEECCCCCHHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCCCCCCCCHHEEECCC
DRAMYEGKQTGRNRCMFIDEQNVINRV
CHHHHCCCCCCCCEEEEEECCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8383113; 9097039; 9278503 [H]