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The map label for this gene is nlpC [H]

Identifier: 82543924

GI number: 82543924

Start: 1395560

End: 1396024

Strand: Direct

Name: nlpC [H]

Synonym: SBO_1420

Alternate gene names: 82543924

Gene position: 1395560-1396024 (Clockwise)

Preceding gene: 82543923

Following gene: 82543925

Centisome position: 30.88

GC content: 49.25

Gene sequence:

>465_bases
ATGCGTTTCTGCCTTATTTTGATCACAGCACTGTTTCTGGCCGGGTGTAGCCACCATAAAGCACCGCCGCCAAATGCCAG
ACTTTCTGATTCGATTACCGTTATTGCCGGTTTGAACGACCAGCTACAAAGCTGGCATGGCACGCCGTATCGTTATGGTG
GCATGACGCGGCGCGGTGTGGACTGTTCGGGATTTGTGGTTGTGACGATGCGCGATCGTTTCGATTTGCAGCTGCCCCGT
GAAACCAAACAACAAGCCTCTATTGGCACGCAAATTGATAAAGACAAGTTGCTGCCAGGTGACCTGGTCTTTTTCAAAAC
GGGGTCCGGACAAAATGGTTTGCATGTAGGTATTTACGATACCAACAACCAATTTATCCACGCCTCTACCAGCAAGGGAG
TGATGCGTTCCTCACTTGATAATGTCTATTGGCAGAAAAATTTCTGGCAGGCGAGACGAATCTAG

Upstream 100 bases:

>100_bases
GAATGCTGATTTTGACCATCTGATTTCATTAGTATCTTGAAAATCGGGTAATTACGACGCTAAATTAATGCAAGAATAAA
AAACAGAGGAACCGTACGGA

Downstream 100 bases:

>100_bases
TATGTCGAAAAATGGACGGCGATGATACATCGCCGTCCATTTACTCCTGAATACAGTAGTATTTTGCAGACAAAAATTCC
GTAAATGGATTATTCGTTTA

Product: lipoprotein

Products: NA

Alternate protein names: ORF-17 [H]

Number of amino acids: Translated: 154; Mature: 154

Protein sequence:

>154_residues
MRFCLILITALFLAGCSHHKAPPPNARLSDSITVIAGLNDQLQSWHGTPYRYGGMTRRGVDCSGFVVVTMRDRFDLQLPR
ETKQQASIGTQIDKDKLLPGDLVFFKTGSGQNGLHVGIYDTNNQFIHASTSKGVMRSSLDNVYWQKNFWQARRI

Sequences:

>Translated_154_residues
MRFCLILITALFLAGCSHHKAPPPNARLSDSITVIAGLNDQLQSWHGTPYRYGGMTRRGVDCSGFVVVTMRDRFDLQLPR
ETKQQASIGTQIDKDKLLPGDLVFFKTGSGQNGLHVGIYDTNNQFIHASTSKGVMRSSLDNVYWQKNFWQARRI
>Mature_154_residues
MRFCLILITALFLAGCSHHKAPPPNARLSDSITVIAGLNDQLQSWHGTPYRYGGMTRRGVDCSGFVVVTMRDRFDLQLPR
ETKQQASIGTQIDKDKLLPGDLVFFKTGSGQNGLHVGIYDTNNQFIHASTSKGVMRSSLDNVYWQKNFWQARRI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1788001, Length=154, Percent_Identity=98.7012987012987, Blast_Score=320, Evalue=3e-89,
Organism=Escherichia coli, GI1788501, Length=127, Percent_Identity=48.0314960629921, Blast_Score=130, Evalue=5e-32,
Organism=Escherichia coli, GI1787944, Length=119, Percent_Identity=35.2941176470588, Blast_Score=77, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 17316; Mature: 17316

Theoretical pI: Translated: 10.08; Mature: 10.08

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFCLILITALFLAGCSHHKAPPPNARLSDSITVIAGLNDQLQSWHGTPYRYGGMTRRGV
CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCHHHHHCCCCCEECCCCCCCCC
DCSGFVVVTMRDRFDLQLPRETKQQASIGTQIDKDKLLPGDLVFFKTGSGQNGLHVGIYD
CCCCEEEEEEECCCCEECCCHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEE
TNNQFIHASTSKGVMRSSLDNVYWQKNFWQARRI
CCCEEEEECCCCCHHHHHHHHHHHCCCCHHHCCC
>Mature Secondary Structure
MRFCLILITALFLAGCSHHKAPPPNARLSDSITVIAGLNDQLQSWHGTPYRYGGMTRRGV
CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCHHHHHCCCCCEECCCCCCCCC
DCSGFVVVTMRDRFDLQLPRETKQQASIGTQIDKDKLLPGDLVFFKTGSGQNGLHVGIYD
CCCCEEEEEEECCCCEECCCHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEE
TNNQFIHASTSKGVMRSSLDNVYWQKNFWQARRI
CCCEEEEECCCCCHHHHHHHHHHHCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]