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The map label for this gene is erfK [H]

Identifier: 82543728

GI number: 82543728

Start: 1211433

End: 1212365

Strand: Direct

Name: erfK [H]

Synonym: SBO_1213

Alternate gene names: 82543728

Gene position: 1211433-1212365 (Clockwise)

Preceding gene: 82543727

Following gene: 82543729

Centisome position: 26.8

GC content: 50.16

Gene sequence:

>933_bases
ATGCGTCGTGTAAATATTTTTTGCTCATTTGCTCTGCTTTTTGCCAGCCATACTAGCCTGGCGGTAACTTACCCATTACC
TCCAGAGGGTAGCCGTTTAGTGGGGCAGTCGTATACTGTAACTGTTCCTGATCACAATACCCAGCCGCTGGAGACTTTTG
CCGCACAAAACGGGCAAGGGTTAAGTAACATGCTGGAAGCGAACCCGGGTGCTGATGTTTTCTTGCCGAAGTCCGGCTCG
CAACTCACCATTCCGCAGCAACTGATTTTGCCCGCCACTGTTCGTAAAGGGATTGTGGTTAACGTCGCTGAGATGCGTCT
TTATTACTACCCACCAGACAGTAATACTGTGGAAGTCTTTCCTATTGGTATCGGCCAGGCTGGGCGAGAAACCCCGCGTA
ACTGGGTGACTACCGTTGAACGTAAACAAGAAGCTCCAACCTGGACGCCAACGCCGAACACTCGGCGCGAATATGCGAAA
CGAGGGGAGAGTTTGCCCGCATTTGTTCCTGCGGGCCCCGATAATCCCATGGGGCTGTACGCGATTTATATTGGCAGGTT
GTATGCCATCCATGGTACCAATGCCAATTTTGGTATTGGGCTCCGGGTAAGTCAGGGCTGTATTCGTCTGCGCAATGACG
ATATCAAATATCTGTTTGATAATGTTCCTGTTGGGACGCGTGTGCAAATTATCGACCAGCCAGTAAAATACACCACTGAA
CCAGATGGCTCGAACTGGCTGGAAGTTCATGAGCCGTTGTCGCGCAATCGTGCAGAATATGAGTTTGACCGAAAAGTGCC
ATTGCCGGTAACCCCATCTTTGCGGGCGTTTATCAGCGGGCAAGAAGTTGATGTAAATCGCGCAAATGCTGCGTTGCAAC
GTCGATCGGGAATGCCTGTGCCAATTAGTTCTGGTTCAAGACAGATGTTTTAA

Upstream 100 bases:

>100_bases
CTACCGGGGAATACGACTTCTGATTTGAACAGTTAAAAACGAAAAGTCTGATAAAAGCTATACTTAACGGATAGCTTTCG
CGACTTAGGAAAGGGACATG

Downstream 100 bases:

>100_bases
GAGCGTTGGTAATTAGAAAGCAAAAAGCCTGCTAGAAAGCAGGCTTTTTTGAATTTGGCTCCTCTGACTGGACTCGAACC
AGTGACATACGGATTAACAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MRRVNIFCSFALLFASHTSLAVTYPLPPEGSRLVGQSYTVTVPDHNTQPLETFAAQNGQGLSNMLEANPGADVFLPKSGS
QLTIPQQLILPATVRKGIVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRREYAK
RGESLPAFVPAGPDNPMGLYAIYIGRLYAIHGTNANFGIGLRVSQGCIRLRNDDIKYLFDNVPVGTRVQIIDQPVKYTTE
PDGSNWLEVHEPLSRNRAEYEFDRKVPLPVTPSLRAFISGQEVDVNRANAALQRRSGMPVPISSGSRQMF

Sequences:

>Translated_310_residues
MRRVNIFCSFALLFASHTSLAVTYPLPPEGSRLVGQSYTVTVPDHNTQPLETFAAQNGQGLSNMLEANPGADVFLPKSGS
QLTIPQQLILPATVRKGIVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRREYAK
RGESLPAFVPAGPDNPMGLYAIYIGRLYAIHGTNANFGIGLRVSQGCIRLRNDDIKYLFDNVPVGTRVQIIDQPVKYTTE
PDGSNWLEVHEPLSRNRAEYEFDRKVPLPVTPSLRAFISGQEVDVNRANAALQRRSGMPVPISSGSRQMF
>Mature_310_residues
MRRVNIFCSFALLFASHTSLAVTYPLPPEGSRLVGQSYTVTVPDHNTQPLETFAAQNGQGLSNMLEANPGADVFLPKSGS
QLTIPQQLILPATVRKGIVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRREYAK
RGESLPAFVPAGPDNPMGLYAIYIGRLYAIHGTNANFGIGLRVSQGCIRLRNDDIKYLFDNVPVGTRVQIIDQPVKYTTE
PDGSNWLEVHEPLSRNRAEYEFDRKVPLPVTPSLRAFISGQEVDVNRANAALQRRSGMPVPISSGSRQMF

Specific function: Responsible, at least in part, for anchoring of the major outer membrane lipoprotein (Lpp, also known as the Braun lipoprotein) to the peptidoglycan via a meso-diaminopimelyl-L-Lys- bond on the terminal residue of Lpp [H]

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1788299, Length=310, Percent_Identity=97.741935483871, Blast_Score=620, Evalue=1e-179,
Organism=Escherichia coli, GI1787040, Length=301, Percent_Identity=63.1229235880399, Blast_Score=391, Evalue=1e-110,
Organism=Escherichia coli, GI1787356, Length=284, Percent_Identity=48.5915492957746, Blast_Score=264, Evalue=5e-72,
Organism=Escherichia coli, GI1787968, Length=311, Percent_Identity=44.6945337620579, Blast_Score=238, Evalue=5e-64,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005490 [H]

Pfam domain/function: PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 34370; Mature: 34370

Theoretical pI: Translated: 9.20; Mature: 9.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRVNIFCSFALLFASHTSLAVTYPLPPEGSRLVGQSYTVTVPDHNTQPLETFAAQNGQG
CCEEEEEHHHHHHHHCCCCEEEEECCCCCCCEEECCEEEEECCCCCCCHHHHHHCCCCCC
LSNMLEANPGADVFLPKSGSQLTIPQQLILPATVRKGIVVNVAEMRLYYYPPDSNTVEVF
HHHHHHCCCCCCEEEECCCCEEECCHHHHHHHHHHCCEEEEEEEEEEEEECCCCCEEEEE
PIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRREYAKRGESLPAFVPAGPDNPMGLY
EECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCEEECCCCCCCCEEE
AIYIGRLYAIHGTNANFGIGLRVSQGCIRLRNDDIKYLFDNVPVGTRVQIIDQPVKYTTE
EEEEEEEEEEECCCCCEEEEEEECCCEEEECCCCEEEEECCCCCCCEEEEEECCCEECCC
PDGSNWLEVHEPLSRNRAEYEFDRKVPLPVTPSLRAFISGQEVDVNRANAALQRRSGMPV
CCCCCCEEECCCHHCCCCCEEECCCCCCCCCCCHHHHCCCCEEECHHHHHHHHHHCCCCC
PISSGSRQMF
EECCCCCCCC
>Mature Secondary Structure
MRRVNIFCSFALLFASHTSLAVTYPLPPEGSRLVGQSYTVTVPDHNTQPLETFAAQNGQG
CCEEEEEHHHHHHHHCCCCEEEEECCCCCCCEEECCEEEEECCCCCCCHHHHHHCCCCCC
LSNMLEANPGADVFLPKSGSQLTIPQQLILPATVRKGIVVNVAEMRLYYYPPDSNTVEVF
HHHHHHCCCCCCEEEECCCCEEECCHHHHHHHHHHCCEEEEEEEEEEEEECCCCCEEEEE
PIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRREYAKRGESLPAFVPAGPDNPMGLY
EECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCEEECCCCCCCCEEE
AIYIGRLYAIHGTNANFGIGLRVSQGCIRLRNDDIKYLFDNVPVGTRVQIIDQPVKYTTE
EEEEEEEEEEECCCCCEEEEEEECCCEEEECCCCEEEEECCCCCCCEEEEEECCCEECCC
PDGSNWLEVHEPLSRNRAEYEFDRKVPLPVTPSLRAFISGQEVDVNRANAALQRRSGMPV
CCCCCCEEECCCHHCCCCCEEECCCCCCCCCCCHHHHCCCCEEECHHHHHHHHHHCCCCC
PISSGSRQMF
EECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7592411; 9097040; 9278503; 9298646 [H]