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The map label for this gene is rhsD [H]

Identifier: 82542990

GI number: 82542990

Start: 417237

End: 417641

Strand: Direct

Name: rhsD [H]

Synonym: SBO_0400

Alternate gene names: 82542990

Gene position: 417237-417641 (Clockwise)

Preceding gene: 82542989

Following gene: 82542991

Centisome position: 9.23

GC content: 63.21

Gene sequence:

>405_bases
GTGCAAAAGTACAGCCCGGCGAGACGGACCTTGCGCTGCCCGACCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAGC
TACCGGACGAAGACGCCTGCGCCAGTGGGAACTTTTTGGCCCCGGCTGGAAAGCGCCTTCTGATATCCGCTTACAGATAC
GCGATGATGCACTGGTACTCAACGACAACGGCGGGCGGAGCATTCACTTTGAGCCGCTGCTGCCGGGGAAGGCTGTGTAC
AGCCGCAGTGAGTCAATGTGGCTGGTGCGTGGCGGTAAGGCAGCGCAGCCGGACGGCCACACGCTGGCACGACTGTGGGC
GTCGCTGCCGCCGGATATCCGGTTAAGCCCGCATCTTTACCTGGCGACCAACAGCGCACAGGGGCCGTGGTGGATACTGG
GGTGA

Upstream 100 bases:

>100_bases
CAGGGTTCGGCAGGTGTAAGAATTGGCGCGCCAACTGGCGTGGCGTGCTCGGTGTGTCCGGGCGGGATGACCTCGGGCAA
CCCGGTGAACCCGCTGCTCG

Downstream 100 bases:

>100_bases
TCTGAGCGGGTGCCGGGTGCTGAGGACGTACTGCCAGCGCCGCTGCCGCCGTACCGGGTGCTTACCGGGATGGCGGACCG
CTTCGGGCGGACGCTGACGT

Product: protein in rhs element

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 134; Mature: 134

Protein sequence:

>134_residues
MQKYSPARRTLRCPTRCRSFSPAPTAATGRRRLRQWELFGPGWKAPSDIRLQIRDDALVLNDNGGRSIHFEPLLPGKAVY
SRSESMWLVRGGKAAQPDGHTLARLWASLPPDIRLSPHLYLATNSAQGPWWILG

Sequences:

>Translated_134_residues
MQKYSPARRTLRCPTRCRSFSPAPTAATGRRRLRQWELFGPGWKAPSDIRLQIRDDALVLNDNGGRSIHFEPLLPGKAVY
SRSESMWLVRGGKAAQPDGHTLARLWASLPPDIRLSPHLYLATNSAQGPWWILG
>Mature_134_residues
MQKYSPARRTLRCPTRCRSFSPAPTAATGRRRLRQWELFGPGWKAPSDIRLQIRDDALVLNDNGGRSIHFEPLLPGKAVY
SRSESMWLVRGGKAAQPDGHTLARLWASLPPDIRLSPHLYLATNSAQGPWWILG

Specific function: Rhs elements have a nonessential function. They may play an important role in the natural ecology of the cell [H]

COG id: COG3209

COG function: function code M; Rhs family protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RHS family [H]

Homologues:

Organism=Escherichia coli, GI1786706, Length=123, Percent_Identity=77.2357723577236, Blast_Score=198, Evalue=1e-52,
Organism=Escherichia coli, GI48994942, Length=123, Percent_Identity=56.9105691056911, Blast_Score=145, Evalue=1e-36,
Organism=Escherichia coli, GI1790020, Length=123, Percent_Identity=56.9105691056911, Blast_Score=144, Evalue=1e-36,
Organism=Escherichia coli, GI1786917, Length=123, Percent_Identity=56.9105691056911, Blast_Score=144, Evalue=2e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001826
- InterPro:   IPR022385
- InterPro:   IPR006530 [H]

Pfam domain/function: PF03527 RHS; PF05593 RHS_repeat [H]

EC number: NA

Molecular weight: Translated: 15071; Mature: 15071

Theoretical pI: Translated: 11.57; Mature: 11.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKYSPARRTLRCPTRCRSFSPAPTAATGRRRLRQWELFGPGWKAPSDIRLQIRDDALVL
CCCCCCCCCEEECCHHHCCCCCCCCCHHHHHHHEEEEEECCCCCCCCCEEEEECCCEEEE
NDNGGRSIHFEPLLPGKAVYSRSESMWLVRGGKAAQPDGHTLARLWASLPPDIRLSPHLY
ECCCCCEEEECCCCCCHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCEECCEEE
LATNSAQGPWWILG
EEECCCCCCEEEEC
>Mature Secondary Structure
MQKYSPARRTLRCPTRCRSFSPAPTAATGRRRLRQWELFGPGWKAPSDIRLQIRDDALVL
CCCCCCCCCEEECCHHHCCCCCCCCCHHHHHHHEEEEEECCCCCCCCCEEEEECCCEEEE
NDNGGRSIHFEPLLPGKAVYSRSESMWLVRGGKAAQPDGHTLARLWASLPPDIRLSPHLY
ECCCCCEEEECCCCCCHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCEECCEEE
LATNSAQGPWWILG
EEECCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1766878; 9278503; 2644231; 2403547; 7934896 [H]