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The map label for this gene is rhsD [H]

Identifier: 82542989

GI number: 82542989

Start: 417077

End: 417379

Strand: Direct

Name: rhsD [H]

Synonym: SBO_0399

Alternate gene names: 82542989

Gene position: 417077-417379 (Clockwise)

Preceding gene: 82542987

Following gene: 82542990

Centisome position: 9.23

GC content: 63.7

Gene sequence:

>303_bases
ATGAGCGGAAAACCAGCGGCGCGTCAGGGAGATATGACTCAGTATGGCGGTCCCATTGTCCAGGGTTCGGCAGGTGTAAG
AATTGGCGCGCCAACTGGCGTGGCGTGCTCGGTGTGTCCGGGCGGGATGACCTCGGGCAACCCGGTGAACCCGCTGCTCG
GTGCAAAAGTACAGCCCGGCGAGACGGACCTTGCGCTGCCCGACCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAGC
TACCGGACGAAGACGCCTGCGCCAGTGGGAACTTTTTGGCCCCGGCTGGAAAGCGCCTTCTGA

Upstream 100 bases:

>100_bases
TATGTGAAAAATATATAAATACATTAGCTGGTCATGTGTGTCATTTTATTTTTTTGTTGCTAACACAGGGATATGAACAA
TAACTAAAAGGGCACTTTAT

Downstream 100 bases:

>100_bases
TATCCGCTTACAGATACGCGATGATGCACTGGTACTCAACGACAACGGCGGGCGGAGCATTCACTTTGAGCCGCTGCTGC
CGGGGAAGGCTGTGTACAGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 100; Mature: 99

Protein sequence:

>100_residues
MSGKPAARQGDMTQYGGPIVQGSAGVRIGAPTGVACSVCPGGMTSGNPVNPLLGAKVQPGETDLALPDPLPFILSRTYSS
YRTKTPAPVGTFWPRLESAF

Sequences:

>Translated_100_residues
MSGKPAARQGDMTQYGGPIVQGSAGVRIGAPTGVACSVCPGGMTSGNPVNPLLGAKVQPGETDLALPDPLPFILSRTYSS
YRTKTPAPVGTFWPRLESAF
>Mature_99_residues
SGKPAARQGDMTQYGGPIVQGSAGVRIGAPTGVACSVCPGGMTSGNPVNPLLGAKVQPGETDLALPDPLPFILSRTYSSY
RTKTPAPVGTFWPRLESAF

Specific function: Rhs elements have a nonessential function. They may play an important role in the natural ecology of the cell [H]

COG id: COG3209

COG function: function code M; Rhs family protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RHS family [H]

Homologues:

Organism=Escherichia coli, GI1786706, Length=94, Percent_Identity=95.7446808510638, Blast_Score=182, Evalue=4e-48,
Organism=Escherichia coli, GI48994942, Length=94, Percent_Identity=90.4255319148936, Blast_Score=173, Evalue=2e-45,
Organism=Escherichia coli, GI1790020, Length=94, Percent_Identity=90.4255319148936, Blast_Score=173, Evalue=2e-45,
Organism=Escherichia coli, GI1786917, Length=94, Percent_Identity=90.4255319148936, Blast_Score=172, Evalue=4e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001826
- InterPro:   IPR022385
- InterPro:   IPR006530 [H]

Pfam domain/function: PF03527 RHS; PF05593 RHS_repeat [H]

EC number: NA

Molecular weight: Translated: 10277; Mature: 10146

Theoretical pI: Translated: 9.27; Mature: 9.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGKPAARQGDMTQYGGPIVQGSAGVRIGAPTGVACSVCPGGMTSGNPVNPLLGAKVQPG
CCCCCCCCCCCCCCCCCEEEECCCCEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC
ETDLALPDPLPFILSRTYSSYRTKTPAPVGTFWPRLESAF
CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCC
>Mature Secondary Structure 
SGKPAARQGDMTQYGGPIVQGSAGVRIGAPTGVACSVCPGGMTSGNPVNPLLGAKVQPG
CCCCCCCCCCCCCCCCEEEECCCCEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC
ETDLALPDPLPFILSRTYSSYRTKTPAPVGTFWPRLESAF
CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1766878; 9278503; 2644231; 2403547; 7934896 [H]