Click here to switch to the map view.

The map label for this gene is yafS [H]

Identifier: 82542806

GI number: 82542806

Start: 220768

End: 221493

Strand: Direct

Name: yafS [H]

Synonym: SBO_0202

Alternate gene names: 82542806

Gene position: 220768-221493 (Clockwise)

Preceding gene: 82542803

Following gene: 82542808

Centisome position: 4.88

GC content: 49.45

Gene sequence:

>726_bases
GTGATGAAACCGGCAAGAGTCCCTCAAACTGTCGTGGCTCCTGATTGCTGGGGCGATTTGCCCTGGGGAGAGCTTTATCG
CAAGGCGCTGGAGCGCCAGCTCAACCCGTGGTTCACTAAAATGTATGGTTTTCATCTGCTTAAGATTGGCAATTTAAGCG
CAGAAATCAATTGCGAAGCGTGCGCGGTTTCTCATCAAGTGAATGTTTCTGCGCAAGGAATGCCCGTCCAGGTGCAGGCG
GATCCACTTCATCTTCCTTTTGCCGATAAATCCGTTGATATTTGTCTACTGGCACATACCTTGCCGTGGTGCACCGATCC
GCATCGTTTATTACGTGAAGCCGATCGGGTACTGATTGATGATGGCTGGCTGGTGATTAGTGGCTTCAACCCCATCAGTT
TAATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCTCGCCCTATAATAGCCGGATGTTTACTCTGATGCGGCAA
CTGGACTGGCTCTCTTTGTTGAATTTTGAAGTGCTGCACGCCAGCCGTTTCCACGTTCTCCCGTGGAACAAACACGGAGG
AAAACTATTGAATGCGCATATTCCTGCGCTTGGTTGCTTACAACTTATTGTTGCCCGGAAACGGACTATTCCTTTAACGC
TAAACCCGATGAAACAGAGTAAAAACAAGCCACGAATTCGCCAAGCGGTTGGAGCCACCCGGCAATGTCGTAAACCACAA
GCTTAA

Upstream 100 bases:

>100_bases
AGCGACCTGCCTCATCATTCAAAACCCAGATGTAATTGTCATCAAAGGCGGGAATACTGTTAAGATTCATAGATTACCTC
TCAGTGTAAAACGGAAGGTT

Downstream 100 bases:

>100_bases
ACTTCGACTTGGTAGCCCGTATCTTCCAGTGTGGGATTCATTGCCGCAGCACGAGCCAGTTCATCACAGCGTTCGTTTTC
CGGGTGTCCGGCATGGCCTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MMKPARVPQTVVAPDCWGDLPWGELYRKALERQLNPWFTKMYGFHLLKIGNLSAEINCEACAVSHQVNVSAQGMPVQVQA
DPLHLPFADKSVDICLLAHTLPWCTDPHRLLREADRVLIDDGWLVISGFNPISLMGLRKLVPVLRKTSPYNSRMFTLMRQ
LDWLSLLNFEVLHASRFHVLPWNKHGGKLLNAHIPALGCLQLIVARKRTIPLTLNPMKQSKNKPRIRQAVGATRQCRKPQ
A

Sequences:

>Translated_241_residues
MMKPARVPQTVVAPDCWGDLPWGELYRKALERQLNPWFTKMYGFHLLKIGNLSAEINCEACAVSHQVNVSAQGMPVQVQA
DPLHLPFADKSVDICLLAHTLPWCTDPHRLLREADRVLIDDGWLVISGFNPISLMGLRKLVPVLRKTSPYNSRMFTLMRQ
LDWLSLLNFEVLHASRFHVLPWNKHGGKLLNAHIPALGCLQLIVARKRTIPLTLNPMKQSKNKPRIRQAVGATRQCRKPQ
A
>Mature_241_residues
MMKPARVPQTVVAPDCWGDLPWGELYRKALERQLNPWFTKMYGFHLLKIGNLSAEINCEACAVSHQVNVSAQGMPVQVQA
DPLHLPFADKSVDICLLAHTLPWCTDPHRLLREADRVLIDDGWLVISGFNPISLMGLRKLVPVLRKTSPYNSRMFTLMRQ
LDWLSLLNFEVLHASRFHVLPWNKHGGKLLNAHIPALGCLQLIVARKRTIPLTLNPMKQSKNKPRIRQAVGATRQCRKPQ
A

Specific function: Unknown

COG id: COG0500

COG function: function code QR; SAM-dependent methyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081700, Length=240, Percent_Identity=98.75, Blast_Score=491, Evalue=1e-140,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013216 [H]

Pfam domain/function: PF08241 Methyltransf_11 [H]

EC number: NA

Molecular weight: Translated: 27357; Mature: 27357

Theoretical pI: Translated: 10.51; Mature: 10.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKPARVPQTVVAPDCWGDLPWGELYRKALERQLNPWFTKMYGFHLLKIGNLSAEINCEA
CCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHEEEEEECCCCEEECCCE
CAVSHQVNVSAQGMPVQVQADPLHLPFADKSVDICLLAHTLPWCTDPHRLLREADRVLID
EEEEEEECCCCCCCEEEEECCCEECCCCCCCCEEEEEECCCCCCCCHHHHHHHHCEEEEE
DGWLVISGFNPISLMGLRKLVPVLRKTSPYNSRMFTLMRQLDWLSLLNFEVLHASRFHVL
CCEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHEEECCEEEEE
PWNKHGGKLLNAHIPALGCLQLIVARKRTIPLTLNPMKQSKNKPRIRQAVGATRQCRKPQ
CCCCCCCEEEECCCCHHHHHHHHHHHCCCCEEEECHHHHCCCCCHHHHHHCCHHHHCCCC
A
C
>Mature Secondary Structure
MMKPARVPQTVVAPDCWGDLPWGELYRKALERQLNPWFTKMYGFHLLKIGNLSAEINCEA
CCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHEEEEEECCCCEEECCCE
CAVSHQVNVSAQGMPVQVQADPLHLPFADKSVDICLLAHTLPWCTDPHRLLREADRVLID
EEEEEEECCCCCCCEEEEECCCEECCCCCCCCEEEEEECCCCCCCCHHHHHHHHCEEEEE
DGWLVISGFNPISLMGLRKLVPVLRKTSPYNSRMFTLMRQLDWLSLLNFEVLHASRFHVL
CCEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHEEECCEEEEE
PWNKHGGKLLNAHIPALGCLQLIVARKRTIPLTLNPMKQSKNKPRIRQAVGATRQCRKPQ
CCCCCCCEEEECCCCHHHHHHHHHHHCCCCEEEECHHHHCCCCCHHHHHHCCHHHHCCCC
A
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]