Click here to switch to the map view.

The map label for this gene is yafD [C]

Identifier: 82542802

GI number: 82542802

Start: 217076

End: 217876

Strand: Direct

Name: yafD [C]

Synonym: SBO_0198

Alternate gene names: 82542802

Gene position: 217076-217876 (Clockwise)

Preceding gene: 82542800

Following gene: 82542803

Centisome position: 4.8

GC content: 52.68

Gene sequence:

>801_bases
GTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGATCTTACCGCCGGGGTCTTTTGCGAG
CATCGGCCAGGCATTACCACCTGGGGAACCGTTAAGTACCGAAGAGCGTATTCGGATCCTGGTGTGGAACATATACAAAC
AGCAACGCGCTGAATGGTTGTCGGTATTAAAGAACTACGGCAAAGATGCACACCTGGTGTTATTGCAGGAAGCGCAGACA
ACGCCAGAGTTAGTACAGTTTGCGACCGCTAACTATCTTGCCGCCGATCAGGTACCCGCTTTCGTGCTGCCACAACATCC
TTCTGGCGTAATGACCCTTTCGGCGGCACATCCAGTGTATTGCTGCCCGTTACGTGAACGAGAACCCATTTTGCGTCTGG
CGAAGTCGGCACTGGTGACGGTCTATCCATTACCTGACACCCGCCTGTTGATGGTGGTTAATATACACGCCGTCAACTTC
AGTCTGGGCGTGGATGTCTATAGTAAGCAGTTACTTCCTATTGGTGATCAGATAGCTCACCACAGCGGCCCGGTCATTAT
GGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGG
TGCGTTTTACCGATGATCAGCGCCGTCGGGCGTTTGGTCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGT
GAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATA
A

Upstream 100 bases:

>100_bases
ATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAATAGTAGAACCCTCCCGAGTGCGGAAGGGTTGACGTAA
TAGAGGTTTCAAAGTCAAAA

Downstream 100 bases:

>100_bases
GGTATGTCAGGTCTGCCACAGGGCAGACCAACGTTTGGCGCTGCGCAAAACGTGAGCGCGGTGGTGGCGTATGACTTATC
GGCCCACATGCTGGATGTCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MRKNTYAMRYVAGQPAERILPPGSFASIGQALPPGEPLSTEERIRILVWNIYKQQRAEWLSVLKNYGKDAHLVLLQEAQT
TPELVQFATANYLAADQVPAFVLPQHPSGVMTLSAAHPVYCCPLREREPILRLAKSALVTVYPLPDTRLLMVVNIHAVNF
SLGVDVYSKQLLPIGDQIAHHSGPVIMAGDFNAWSRRRMNALYRFAREMSLRQVRFTDDQRRRAFGRPLDFVFYRGLNVS
EASVLVTRASDHNPLLVEFSPGKPDK

Sequences:

>Translated_266_residues
MRKNTYAMRYVAGQPAERILPPGSFASIGQALPPGEPLSTEERIRILVWNIYKQQRAEWLSVLKNYGKDAHLVLLQEAQT
TPELVQFATANYLAADQVPAFVLPQHPSGVMTLSAAHPVYCCPLREREPILRLAKSALVTVYPLPDTRLLMVVNIHAVNF
SLGVDVYSKQLLPIGDQIAHHSGPVIMAGDFNAWSRRRMNALYRFAREMSLRQVRFTDDQRRRAFGRPLDFVFYRGLNVS
EASVLVTRASDHNPLLVEFSPGKPDK
>Mature_266_residues
MRKNTYAMRYVAGQPAERILPPGSFASIGQALPPGEPLSTEERIRILVWNIYKQQRAEWLSVLKNYGKDAHLVLLQEAQT
TPELVQFATANYLAADQVPAFVLPQHPSGVMTLSAAHPVYCCPLREREPILRLAKSALVTVYPLPDTRLLMVVNIHAVNF
SLGVDVYSKQLLPIGDQIAHHSGPVIMAGDFNAWSRRRMNALYRFAREMSLRQVRFTDDQRRRAFGRPLDFVFYRGLNVS
EASVLVTRASDHNPLLVEFSPGKPDK

Specific function: Unknown

COG id: COG3021

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0294 family [H]

Homologues:

Organism=Escherichia coli, GI1786403, Length=266, Percent_Identity=100, Blast_Score=549, Evalue=1e-158,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005135
- InterPro:   IPR022958 [H]

Pfam domain/function: PF03372 Exo_endo_phos [H]

EC number: NA

Molecular weight: Translated: 29992; Mature: 29992

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKNTYAMRYVAGQPAERILPPGSFASIGQALPPGEPLSTEERIRILVWNIYKQQRAEWL
CCCCCEEEEEECCCCHHHCCCCCCHHHHCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHH
SVLKNYGKDAHLVLLQEAQTTPELVQFATANYLAADQVPAFVLPQHPSGVMTLSAAHPVY
HHHHHCCCCEEEEEEECCCCCHHHHHHHHHCCEECCCCCEEEECCCCCCEEEEECCCCEE
CCPLREREPILRLAKSALVTVYPLPDTRLLMVVNIHAVNFSLGVDVYSKQLLPIGDQIAH
ECCCCCCCHHHHHHHHHEEEEEECCCCEEEEEEEEEEEEEEECCHHHHCCCCCCCHHHHH
HSGPVIMAGDFNAWSRRRMNALYRFAREMSLRQVRFTDDQRRRAFGRPLDFVFYRGLNVS
CCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHCCCCCEEEECCCCCC
EASVLVTRASDHNPLLVEFSPGKPDK
CCEEEEEECCCCCCEEEEECCCCCCC
>Mature Secondary Structure
MRKNTYAMRYVAGQPAERILPPGSFASIGQALPPGEPLSTEERIRILVWNIYKQQRAEWL
CCCCCEEEEEECCCCHHHCCCCCCHHHHCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHH
SVLKNYGKDAHLVLLQEAQTTPELVQFATANYLAADQVPAFVLPQHPSGVMTLSAAHPVY
HHHHHCCCCEEEEEEECCCCCHHHHHHHHHCCEECCCCCEEEECCCCCCEEEEECCCCEE
CCPLREREPILRLAKSALVTVYPLPDTRLLMVVNIHAVNFSLGVDVYSKQLLPIGDQIAH
ECCCCCCCHHHHHHHHHEEEEEECCCCEEEEEEEEEEEEEEECCHHHHCCCCCCCHHHHH
HSGPVIMAGDFNAWSRRRMNALYRFAREMSLRQVRFTDDQRRRAFGRPLDFVFYRGLNVS
CCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHCCCCCEEEECCCCCC
EASVLVTRASDHNPLLVEFSPGKPDK
CCEEEEEECCCCCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA