Click here to switch to the map view.

The map label for this gene is 78780092

Identifier: 78780092

GI number: 78780092

Start: 1596532

End: 1597320

Strand: Reverse

Name: 78780092

Synonym: PMT9312_1707

Alternate gene names: NA

Gene position: 1597320-1596532 (Counterclockwise)

Preceding gene: 78780093

Following gene: 78780091

Centisome position: 93.45

GC content: 31.94

Gene sequence:

>789_bases
ATGATAACTTTTAAAAAAGTTAAGGTTTGTTTTTTATTAATTTTTGTTTTTGTCAATATTTTTTATATTGCACCATGCTA
TTCATTATCTTTAAGAGAGGATTTGTTTAAAAATGCAATAGATTTAAGTTCAGGCGGACAATTTAATCTCGCTCTACAAG
AATGGAATCACTATCTCGATTCTTATCCTGATGATGCTGCCGCTTTGAGCAATAGAGGAAATGTAAGACTTGTCATTGGA
GATGTAGAGGGATCAATAGATGATCAAAATAAGGCAATAGGTTTAAATCCTAATGAAATAGATCCTTACATTAACAGAGG
TATAGCAGAGGAGGCCTTGGGTCTATGGTCGCAAGCAAAAAAAGATTATATGTTTGTTATTTCGCAAGATAATAAGAATT
TCTCTGCATTATATAATTTGGCTAATGTTGAAGGTTCTGCATCACAATGGGAAAAAGCAAGAGATTTATTTTCAAAAGCT
GCTACATATAATCCTGGATTTGCGATGGCAAGATCAAGTATGGCTTTAGCAGATTTCCAGTTGGGAAATATTGATGAATC
TGAAAAAGAATTAAAAAAATTAATTAGACGTTATCCAACTTTTGCAGATGCTAGGGCAGCTTTAACAGCTTTGAATTGGT
ATAATGGTGAATATGGTAAAGCAGAGAGTAATTGGATAGCAGTAACTGAATTAGATCCTAGGTATAGTGATGAGAAATGG
TTAAAAACAATAAGAAGATGGCCTCCAAAACCAATTAAGGATTTAATGAACTTTATTGATTTAAAATAA

Upstream 100 bases:

>100_bases
TTTGTAGTTGAGCCATATCTAATCCAAATTGGTTTTCTCACAAGAACTCCTCGAGGAAGATTGCTTACTGCTTTAGGGAA
AAAGTACATTGATTCAAAAA

Downstream 100 bases:

>100_bases
GTAATGAATAGAGATGAGTGCTTTCAAAAAATTGATTCATTTAATGATGAATTAATTAATTTAAGAAGACATATCCATGC
ACATCCGGAATTAAGTGGAC

Product: TPR repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MITFKKVKVCFLLIFVFVNIFYIAPCYSLSLREDLFKNAIDLSSGGQFNLALQEWNHYLDSYPDDAAALSNRGNVRLVIG
DVEGSIDDQNKAIGLNPNEIDPYINRGIAEEALGLWSQAKKDYMFVISQDNKNFSALYNLANVEGSASQWEKARDLFSKA
ATYNPGFAMARSSMALADFQLGNIDESEKELKKLIRRYPTFADARAALTALNWYNGEYGKAESNWIAVTELDPRYSDEKW
LKTIRRWPPKPIKDLMNFIDLK

Sequences:

>Translated_262_residues
MITFKKVKVCFLLIFVFVNIFYIAPCYSLSLREDLFKNAIDLSSGGQFNLALQEWNHYLDSYPDDAAALSNRGNVRLVIG
DVEGSIDDQNKAIGLNPNEIDPYINRGIAEEALGLWSQAKKDYMFVISQDNKNFSALYNLANVEGSASQWEKARDLFSKA
ATYNPGFAMARSSMALADFQLGNIDESEKELKKLIRRYPTFADARAALTALNWYNGEYGKAESNWIAVTELDPRYSDEKW
LKTIRRWPPKPIKDLMNFIDLK
>Mature_262_residues
MITFKKVKVCFLLIFVFVNIFYIAPCYSLSLREDLFKNAIDLSSGGQFNLALQEWNHYLDSYPDDAAALSNRGNVRLVIG
DVEGSIDDQNKAIGLNPNEIDPYINRGIAEEALGLWSQAKKDYMFVISQDNKNFSALYNLANVEGSASQWEKARDLFSKA
ATYNPGFAMARSSMALADFQLGNIDESEKELKKLIRRYPTFADARAALTALNWYNGEYGKAESNWIAVTELDPRYSDEKW
LKTIRRWPPKPIKDLMNFIDLK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 4 TPR repeats [H]

Homologues:

Organism=Drosophila melanogaster, GI17647755, Length=157, Percent_Identity=31.8471337579618, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24585827, Length=157, Percent_Identity=31.8471337579618, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24585829, Length=157, Percent_Identity=31.8471337579618, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001440
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF00515 TPR_1 [H]

EC number: NA

Molecular weight: Translated: 29841; Mature: 29841

Theoretical pI: Translated: 5.20; Mature: 5.20

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITFKKVKVCFLLIFVFVNIFYIAPCYSLSLREDLFKNAIDLSSGGQFNLALQEWNHYLD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHH
SYPDDAAALSNRGNVRLVIGDVEGSIDDQNKAIGLNPNEIDPYINRGIAEEALGLWSQAK
CCCCHHHHHCCCCCEEEEEECCCCCCCCCCCEECCCCCCCCHHHHCCHHHHHHHHHHHCC
KDYMFVISQDNKNFSALYNLANVEGSASQWEKARDLFSKAATYNPGFAMARSSMALADFQ
CCEEEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
LGNIDESEKELKKLIRRYPTFADARAALTALNWYNGEYGKAESNWIAVTELDPRYSDEKW
CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCHHH
LKTIRRWPPKPIKDLMNFIDLK
HHHHHCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MITFKKVKVCFLLIFVFVNIFYIAPCYSLSLREDLFKNAIDLSSGGQFNLALQEWNHYLD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHH
SYPDDAAALSNRGNVRLVIGDVEGSIDDQNKAIGLNPNEIDPYINRGIAEEALGLWSQAK
CCCCHHHHHCCCCCEEEEEECCCCCCCCCCCEECCCCCCCCHHHHCCHHHHHHHHHHHCC
KDYMFVISQDNKNFSALYNLANVEGSASQWEKARDLFSKAATYNPGFAMARSSMALADFQ
CCEEEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
LGNIDESEKELKKLIRRYPTFADARAALTALNWYNGEYGKAESNWIAVTELDPRYSDEKW
CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCHHH
LKTIRRWPPKPIKDLMNFIDLK
HHHHHCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1368342; 8905231 [H]