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The map label for this gene is ruvB

Identifier: 78780093

GI number: 78780093

Start: 1597307

End: 1598365

Strand: Reverse

Name: ruvB

Synonym: PMT9312_1708

Alternate gene names: 78780093

Gene position: 1598365-1597307 (Counterclockwise)

Preceding gene: 78780095

Following gene: 78780092

Centisome position: 93.52

GC content: 32.96

Gene sequence:

>1059_bases
ATGGCAATAATTTCCTCCAATATAGGCGATAATGACTTTTCTCTTCGTAAAAAAGAGCTTAGGCTAGTTGATTCAAAAAT
CATTCCAGAAGAAAAAAGAAAAAATAATCTGAACTTAGCTAGGCCTATTACTTTTCAAGAATTTATAGGCCAAGAAAAAC
TTAAGTCTTCTTTAAGAATAGCTATAGATGCTTCAATTTATAGAAAAGAACCTTTGGAGCATACTCTTTTATATGGACAG
CCTGGTTTAGGTAAGACTACCCTAGCTTTTTTGATAGCCAAAGAAATGAATACAAAATGTAGGATAGCTACTGCCCCCGC
GATTGAAAGACCTAGAGATATTGTAGGGTTACTGCTTGGATTAAAAGAAGGTGAAGTTTTATTTATTGATGAGATACATC
GCTTAAATAGGTTAACTGAAGAGTTGTTATATTCTGCAATGGAGGATTTTAGACTTGATTTAACTATGGGAGCTAATAGA
GGAGCACGTTGCAGAACAATTAATCTTCCCAGGTTTACTCTGGTTGGCGCCACAACTAAATTAGCCTCAATTAGTGCGCC
TCTAAGAGATAGATTTGGGATATCTCAAAAAATTGAATTTTATACATGTGATGAACTAAAACAAATAATTGATAATTTCT
CCAGATTAATAAGCTTTAATGTAGATGATGAAGCATCCTCTCACTTAGCAAAGATATCTCGAGGGACTCCAAGAATTGCT
TTGAGATTATTAAGACGAGTTAGAGATTATGCTCAAGTTGTTAAAAAAACTAATGTTATCTCCGTGAATTTAATAAAAAA
AGCTTTAAATTCTTACCAAATAGATGAAAAAGGATTGGATTATGTAGATAGACAATATTTATCTTTTCTAAACCAAAACA
AAAATATTCCAACTGGCCTAGATTCAATTGCAGCCGGATTGGGTGATGATTCTTCAATGTTAGAATTTGTAGTTGAGCCA
TATCTAATCCAAATTGGTTTTCTCACAAGAACTCCTCGAGGAAGATTGCTTACTGCTTTAGGGAAAAAGTACATTGATTC
AAAAAATGATAACTTTTAA

Upstream 100 bases:

>100_bases
ATTTTCTTTATTAGTATTTTTTCTAACTTTGTTTGAATTTTTTGCCATTTTAGCTGTAAAAAATCTTTCTACTTAGAACA
ATTGCAATTAACCTTTCATT

Downstream 100 bases:

>100_bases
AAAAGTTAAGGTTTGTTTTTTATTAATTTTTGTTTTTGTCAATATTTTTTATATTGCACCATGCTATTCATTATCTTTAA
GAGAGGATTTGTTTAAAAAT

Product: Holliday junction DNA helicase RuvB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 352; Mature: 351

Protein sequence:

>352_residues
MAIISSNIGDNDFSLRKKELRLVDSKIIPEEKRKNNLNLARPITFQEFIGQEKLKSSLRIAIDASIYRKEPLEHTLLYGQ
PGLGKTTLAFLIAKEMNTKCRIATAPAIERPRDIVGLLLGLKEGEVLFIDEIHRLNRLTEELLYSAMEDFRLDLTMGANR
GARCRTINLPRFTLVGATTKLASISAPLRDRFGISQKIEFYTCDELKQIIDNFSRLISFNVDDEASSHLAKISRGTPRIA
LRLLRRVRDYAQVVKKTNVISVNLIKKALNSYQIDEKGLDYVDRQYLSFLNQNKNIPTGLDSIAAGLGDDSSMLEFVVEP
YLIQIGFLTRTPRGRLLTALGKKYIDSKNDNF

Sequences:

>Translated_352_residues
MAIISSNIGDNDFSLRKKELRLVDSKIIPEEKRKNNLNLARPITFQEFIGQEKLKSSLRIAIDASIYRKEPLEHTLLYGQ
PGLGKTTLAFLIAKEMNTKCRIATAPAIERPRDIVGLLLGLKEGEVLFIDEIHRLNRLTEELLYSAMEDFRLDLTMGANR
GARCRTINLPRFTLVGATTKLASISAPLRDRFGISQKIEFYTCDELKQIIDNFSRLISFNVDDEASSHLAKISRGTPRIA
LRLLRRVRDYAQVVKKTNVISVNLIKKALNSYQIDEKGLDYVDRQYLSFLNQNKNIPTGLDSIAAGLGDDSSMLEFVVEP
YLIQIGFLTRTPRGRLLTALGKKYIDSKNDNF
>Mature_351_residues
AIISSNIGDNDFSLRKKELRLVDSKIIPEEKRKNNLNLARPITFQEFIGQEKLKSSLRIAIDASIYRKEPLEHTLLYGQP
GLGKTTLAFLIAKEMNTKCRIATAPAIERPRDIVGLLLGLKEGEVLFIDEIHRLNRLTEELLYSAMEDFRLDLTMGANRG
ARCRTINLPRFTLVGATTKLASISAPLRDRFGISQKIEFYTCDELKQIIDNFSRLISFNVDDEASSHLAKISRGTPRIAL
RLLRRVRDYAQVVKKTNVISVNLIKKALNSYQIDEKGLDYVDRQYLSFLNQNKNIPTGLDSIAAGLGDDSSMLEFVVEPY
LIQIGFLTRTPRGRLLTALGKKYIDSKNDNF

Specific function: The ruvA-ruvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is an helicase that mediates the Holliday

COG id: COG2255

COG function: function code L; Holliday junction resolvasome, helicase subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ruvB family [H]

Homologues:

Organism=Escherichia coli, GI1788167, Length=299, Percent_Identity=45.819397993311, Blast_Score=285, Evalue=4e-78,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR004605
- InterPro:   IPR008823
- InterPro:   IPR008824
- InterPro:   IPR011991
- ProDom:   PD005323 [H]

Pfam domain/function: PF05491 RuvB_C; PF05496 RuvB_N [H]

EC number: =3.6.4.12 [H]

Molecular weight: Translated: 39868; Mature: 39737

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIISSNIGDNDFSLRKKELRLVDSKIIPEEKRKNNLNLARPITFQEFIGQEKLKSSLRI
CCEEECCCCCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCHHHHHHCHHHHHHHHEE
AIDASIYRKEPLEHTLLYGQPGLGKTTLAFLIAKEMNTKCRIATAPAIERPRDIVGLLLG
EEEHHHHHCCCCHHHEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHC
LKEGEVLFIDEIHRLNRLTEELLYSAMEDFRLDLTMGANRGARCRTINLPRFTLVGATTK
CCCCCEEEHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCEEEEECCCCEEEECCHHH
LASISAPLRDRFGISQKIEFYTCDELKQIIDNFSRLISFNVDDEASSHLAKISRGTPRIA
HHHCCCCHHHHCCCCCCEEEEEHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHCCCHHHH
LRLLRRVRDYAQVVKKTNVISVNLIKKALNSYQIDEKGLDYVDRQYLSFLNQNKNIPTGL
HHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCH
DSIAAGLGDDSSMLEFVVEPYLIQIGFLTRTPRGRLLTALGKKYIDSKNDNF
HHHHHCCCCCHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
AIISSNIGDNDFSLRKKELRLVDSKIIPEEKRKNNLNLARPITFQEFIGQEKLKSSLRI
CEEECCCCCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCHHHHHHCHHHHHHHHEE
AIDASIYRKEPLEHTLLYGQPGLGKTTLAFLIAKEMNTKCRIATAPAIERPRDIVGLLLG
EEEHHHHHCCCCHHHEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHC
LKEGEVLFIDEIHRLNRLTEELLYSAMEDFRLDLTMGANRGARCRTINLPRFTLVGATTK
CCCCCEEEHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCEEEEECCCCEEEECCHHH
LASISAPLRDRFGISQKIEFYTCDELKQIIDNFSRLISFNVDDEASSHLAKISRGTPRIA
HHHCCCCHHHHCCCCCCEEEEEHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHCCCHHHH
LRLLRRVRDYAQVVKKTNVISVNLIKKALNSYQIDEKGLDYVDRQYLSFLNQNKNIPTGL
HHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCH
DSIAAGLGDDSSMLEFVVEPYLIQIGFLTRTPRGRLLTALGKKYIDSKNDNF
HHHHHCCCCCHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA