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The map label for this gene is icd [H]

Identifier: 78780073

GI number: 78780073

Start: 1576054

End: 1577478

Strand: Direct

Name: icd [H]

Synonym: PMT9312_1688

Alternate gene names: 78780073

Gene position: 1576054-1577478 (Clockwise)

Preceding gene: 78780067

Following gene: 78780078

Centisome position: 92.21

GC content: 34.74

Gene sequence:

>1425_bases
ATGCCAAAATTTGAAAAATTAAATTTACCTAATCAAGGAGAAATAATAACTTTCAAACACGGCAAGCCTAATGTTCCTAA
TAATCCAATTGTTCCATTTATTAGGGGTGATGGAACTGGAGTTGATATATGGCCAGCAACACAAATTGTTCTTGATGCAG
CGATTAAAAAAAGCTATGGAGATGAAAGAAAAATTAATTGGTTTAAAGTCTATGCAGGAGATGAAGCTTGTGAACTTTAT
GGAACATATAACTATCTCCCCCAAGATACTATTGAAGCAATTAAACACTTCGGTGTAGCCATCAAGGGTCCTTTAACAAC
TCCCATCGGAGGAGGCATTAGATCACTTAATGTTGCATTAAGACAAATCTTTGATTTATATAGCTGTGTTAGACCATGCA
GATATTATTCAGGAACTCCAAGCCCTCACAAAAACCCTCAAAATCTGGACGTTATTGTTTATAGAGAAAATACTGAGGAC
ATCTACATGGGGATCGAATGGGAAGCCGAAGATCATAATTGTCTTGAATTAATTAATCACTTAAATAACGTTGTAATACC
AAGTAGTAATAATTTAAAAAATAGGTCAATTCCAAAAGGGTCTGGAATAGGAATAAAACCAGTTAGTAAATTTGGTAGCC
AAAGACATATTAGAAAAGCTATTGAGCATGCAAAAAAATTATCAGGAGATAAAAGGCATGTGACTCTCGTACATAAAGGC
AATATCATGAAATATACCGAAGGTGCATTTAGAGATTGGGGATATGAATTAGCAGTAAATGAATTTAGAGAAGATTGCAT
TACAGAAAGAGAAAGCTGGATTTTAGATAATATTCAGAAAAATCCAGAAATTACAATTGAAAATAATGCTCGTAAAATTG
AACCAGGTTTTGACAAGCTTACCAATAACAAAAAAGCATTCATTTGCGAAGAAATTAAAGAAGTTATTGCATCAATATCA
AATACTCATGGAGATGGGAAATGGCGAGAACTTATTCTTGTTGATGATCGGATAGCTGACAGTATATTTCAACAAATTCA
AACTCGACCTCAAGAATATTCAATTCTTGCAACATTAAACCTGAATGGAGACTATGTTTCTGATGCAGCTGCTGCAATTG
TTGGTGGGCTAGGTATGGCTCCTGGAGCGAATATTGGAGATAATGCAGCAATTTTCGAAGCTACGCATGGTACTGCGCCA
AAACATGCAGGCTTAAATAAGATTAATCCAGGCTCAGTCATTCTAAGTGGTGTAATGATGCTTGAATATTTTGGTTGGAA
TGAAGCAGCTAACTTAATTACTAATGGTTTAAGTAAGGCAATAGAGCAAAAAAAAGTCACCTATGATCTAGCACGTTTAA
TGGAACCTAAAGTAGAACCCTTATCCTGCAGCAGTTTTGCTGAAGAAATTATCTCAAATTTCTAA

Upstream 100 bases:

>100_bases
ACATTTGAATAATAAATTTCTAGCTTTTAAAGAAAATAACTCATCACAAATTACAATACGAAGAACTTTAATGAGTTATC
TTTGTTCTTAATTCAATGCT

Downstream 100 bases:

>100_bases
TTTTAACAAGTATTTTTATTTTCCAAAACTTTCCATATATTAACAAGTGAATCTTTAGTGCCAATGTTTCCAGGATGTGT
AATGATAGGAAGCTTTTCAT

Product: isocitrate dehydrogenase

Products: NA

Alternate protein names: IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase [H]

Number of amino acids: Translated: 474; Mature: 473

Protein sequence:

>474_residues
MPKFEKLNLPNQGEIITFKHGKPNVPNNPIVPFIRGDGTGVDIWPATQIVLDAAIKKSYGDERKINWFKVYAGDEACELY
GTYNYLPQDTIEAIKHFGVAIKGPLTTPIGGGIRSLNVALRQIFDLYSCVRPCRYYSGTPSPHKNPQNLDVIVYRENTED
IYMGIEWEAEDHNCLELINHLNNVVIPSSNNLKNRSIPKGSGIGIKPVSKFGSQRHIRKAIEHAKKLSGDKRHVTLVHKG
NIMKYTEGAFRDWGYELAVNEFREDCITERESWILDNIQKNPEITIENNARKIEPGFDKLTNNKKAFICEEIKEVIASIS
NTHGDGKWRELILVDDRIADSIFQQIQTRPQEYSILATLNLNGDYVSDAAAAIVGGLGMAPGANIGDNAAIFEATHGTAP
KHAGLNKINPGSVILSGVMMLEYFGWNEAANLITNGLSKAIEQKKVTYDLARLMEPKVEPLSCSSFAEEIISNF

Sequences:

>Translated_474_residues
MPKFEKLNLPNQGEIITFKHGKPNVPNNPIVPFIRGDGTGVDIWPATQIVLDAAIKKSYGDERKINWFKVYAGDEACELY
GTYNYLPQDTIEAIKHFGVAIKGPLTTPIGGGIRSLNVALRQIFDLYSCVRPCRYYSGTPSPHKNPQNLDVIVYRENTED
IYMGIEWEAEDHNCLELINHLNNVVIPSSNNLKNRSIPKGSGIGIKPVSKFGSQRHIRKAIEHAKKLSGDKRHVTLVHKG
NIMKYTEGAFRDWGYELAVNEFREDCITERESWILDNIQKNPEITIENNARKIEPGFDKLTNNKKAFICEEIKEVIASIS
NTHGDGKWRELILVDDRIADSIFQQIQTRPQEYSILATLNLNGDYVSDAAAAIVGGLGMAPGANIGDNAAIFEATHGTAP
KHAGLNKINPGSVILSGVMMLEYFGWNEAANLITNGLSKAIEQKKVTYDLARLMEPKVEPLSCSSFAEEIISNF
>Mature_473_residues
PKFEKLNLPNQGEIITFKHGKPNVPNNPIVPFIRGDGTGVDIWPATQIVLDAAIKKSYGDERKINWFKVYAGDEACELYG
TYNYLPQDTIEAIKHFGVAIKGPLTTPIGGGIRSLNVALRQIFDLYSCVRPCRYYSGTPSPHKNPQNLDVIVYRENTEDI
YMGIEWEAEDHNCLELINHLNNVVIPSSNNLKNRSIPKGSGIGIKPVSKFGSQRHIRKAIEHAKKLSGDKRHVTLVHKGN
IMKYTEGAFRDWGYELAVNEFREDCITERESWILDNIQKNPEITIENNARKIEPGFDKLTNNKKAFICEEIKEVIASISN
THGDGKWRELILVDDRIADSIFQQIQTRPQEYSILATLNLNGDYVSDAAAAIVGGLGMAPGANIGDNAAIFEATHGTAPK
HAGLNKINPGSVILSGVMMLEYFGWNEAANLITNGLSKAIEQKKVTYDLARLMEPKVEPLSCSSFAEEIISNF

Specific function: Unknown

COG id: COG0538

COG function: function code C; Isocitrate dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the isocitrate and isopropylmalate dehydrogenases family [H]

Homologues:

Organism=Homo sapiens, GI5031777, Length=209, Percent_Identity=32.0574162679426, Blast_Score=97, Evalue=4e-20,
Organism=Homo sapiens, GI28178838, Length=133, Percent_Identity=30.8270676691729, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI4758582, Length=116, Percent_Identity=31.0344827586207, Blast_Score=67, Evalue=4e-11,
Organism=Escherichia coli, GI1787381, Length=469, Percent_Identity=48.8272921108742, Blast_Score=444, Evalue=1e-126,
Organism=Escherichia coli, GI87081683, Length=159, Percent_Identity=30.188679245283, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1788101, Length=134, Percent_Identity=29.8507462686567, Blast_Score=67, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI71986051, Length=258, Percent_Identity=30.6201550387597, Blast_Score=95, Evalue=8e-20,
Organism=Caenorhabditis elegans, GI17505779, Length=139, Percent_Identity=33.8129496402878, Blast_Score=79, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI25144293, Length=110, Percent_Identity=33.6363636363636, Blast_Score=75, Evalue=7e-14,
Organism=Saccharomyces cerevisiae, GI6324709, Length=461, Percent_Identity=28.1995661605206, Blast_Score=145, Evalue=1e-35,
Organism=Saccharomyces cerevisiae, GI6322097, Length=415, Percent_Identity=27.710843373494, Blast_Score=115, Evalue=1e-26,
Organism=Saccharomyces cerevisiae, GI6324291, Length=168, Percent_Identity=30.3571428571429, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24643268, Length=451, Percent_Identity=29.490022172949, Blast_Score=161, Evalue=1e-39,
Organism=Drosophila melanogaster, GI24643270, Length=451, Percent_Identity=29.9334811529933, Blast_Score=153, Evalue=2e-37,
Organism=Drosophila melanogaster, GI24661184, Length=126, Percent_Identity=40.4761904761905, Blast_Score=99, Evalue=4e-21,

Paralogues:

None

Copy number: 8180 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 240 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1480 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019818
- InterPro:   IPR001804
- InterPro:   IPR004439 [H]

Pfam domain/function: PF00180 Iso_dh [H]

EC number: =1.1.1.42 [H]

Molecular weight: Translated: 52796; Mature: 52664

Theoretical pI: Translated: 6.65; Mature: 6.65

Prosite motif: PS00470 IDH_IMDH

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKFEKLNLPNQGEIITFKHGKPNVPNNPIVPFIRGDGTGVDIWPATQIVLDAAIKKSYG
CCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEECCCCCEEECCHHHHHHHHHHHHCCC
DERKINWFKVYAGDEACELYGTYNYLPQDTIEAIKHFGVAIKGPLTTPIGGGIRSLNVAL
CCCCCEEEEEEECCCEEEEEECCCCCCHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHH
RQIFDLYSCVRPCRYYSGTPSPHKNPQNLDVIVYRENTEDIYMGIEWEAEDHNCLELINH
HHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCHHHHHHHH
LNNVVIPSSNNLKNRSIPKGSGIGIKPVSKFGSQRHIRKAIEHAKKLSGDKRHVTLVHKG
HCCEEECCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEEECC
NIMKYTEGAFRDWGYELAVNEFREDCITERESWILDNIQKNPEITIENNARKIEPGFDKL
CEEEECCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCEECCCCHHHH
TNNKKAFICEEIKEVIASISNTHGDGKWRELILVDDRIADSIFQQIQTRPQEYSILATLN
CCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECHHHHHHHHHHHHCCCCCEEEEEEEE
LNGDYVSDAAAAIVGGLGMAPGANIGDNAAIFEATHGTAPKHAGLNKINPGSVILSGVMM
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHH
LEYFGWNEAANLITNGLSKAIEQKKVTYDLARLMEPKVEPLSCSSFAEEIISNF
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure 
PKFEKLNLPNQGEIITFKHGKPNVPNNPIVPFIRGDGTGVDIWPATQIVLDAAIKKSYG
CCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEECCCCCEEECCHHHHHHHHHHHHCCC
DERKINWFKVYAGDEACELYGTYNYLPQDTIEAIKHFGVAIKGPLTTPIGGGIRSLNVAL
CCCCCEEEEEEECCCEEEEEECCCCCCHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHH
RQIFDLYSCVRPCRYYSGTPSPHKNPQNLDVIVYRENTEDIYMGIEWEAEDHNCLELINH
HHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCHHHHHHHH
LNNVVIPSSNNLKNRSIPKGSGIGIKPVSKFGSQRHIRKAIEHAKKLSGDKRHVTLVHKG
HCCEEECCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEEECC
NIMKYTEGAFRDWGYELAVNEFREDCITERESWILDNIQKNPEITIENNARKIEPGFDKL
CEEEECCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCEECCCCHHHH
TNNKKAFICEEIKEVIASISNTHGDGKWRELILVDDRIADSIFQQIQTRPQEYSILATLN
CCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECHHHHHHHHHHHHCCCCCEEEEEEEE
LNGDYVSDAAAAIVGGLGMAPGANIGDNAAIFEATHGTAPKHAGLNKINPGSVILSGVMM
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHH
LEYFGWNEAANLITNGLSKAIEQKKVTYDLARLMEPKVEPLSCSSFAEEIISNF
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8169222; 11759840 [H]