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The map label for this gene is 78780041

Identifier: 78780041

GI number: 78780041

Start: 1543020

End: 1544468

Strand: Reverse

Name: 78780041

Synonym: PMT9312_1656

Alternate gene names: NA

Gene position: 1544468-1543020 (Counterclockwise)

Preceding gene: 78780043

Following gene: 78780040

Centisome position: 90.36

GC content: 26.57

Gene sequence:

>1449_bases
ATGCTTGAAACTTTAAGTCATCAATATTTGAAAAATTTTTTGAGAGATCAAAGTAATAGTTGGGAACACATATATTCTTT
TGGGAGGATAATTTCCAAATGTATTGAAAATGATTCTATATATCTAATTAATTCAGAAATTTTCTCTACCTATGATTGGA
TCCCTCCAATTATGATTTCTTTATTTTTAAAGGAAGAGGATTCAACTTTTATTTTGTCTAAAGAAAAAATTCAATTTATA
AGCCAATTTCAGATTGATTCATTGAAAAATCTAGGTTTTAATTTTATTTTGAAAAATGATCAATTTATTTTTGCAAATCA
TCATGTTCGCTTGATGACAATCCAAAATTTACTTAATGATCCCAATTCTCGTAATCTTAGAAATCATCGAATAGTTTATT
CTGGAATTGAGGATATAAAAGAGGATTTAAAAAAGCATTTTAGAATTTCTTTACATAAAAAGGATTGGACAAAAAATTTT
AAAGAATTTGAATTAATCAATCAAAAATTTATAAAAGTATATGATTCGTTTAAGAAAAAGTTTTTCATGAGAAAGGTCTT
AGGAACTAGTTATATCAATTTAGATGAAAAAGAAATTAGTTTCTTTTCAAACTTTTTTTGTGAAAATTCTTTTTTTTCTG
ATAAATTTTTAAGCGTCAACAAAGCATTATCTCAAGGTTGGGCATGCTGGGTAAAGTTAAACGATACAAATTTAGATTGG
AATTTGTATTTGCAGCCAATAGATGAACTTTCTCAAATTAAGGAATTTTTTTCAAATAATAAATTTGTTTTTTTATCATC
ATTGAGAAAAGATAATTTTTTCCAAATGTATTTTAAAAAGCACAGTTTAGATATTGACTTGGTTATTAATTTTAAAAGTA
ATTTTGAAGAGAAAAAGATTTCATTATATATACCCTCTAAACAGTTGCTTCCTAATAATCCTCTTTTTACCAATTCAATC
GTGGATAAATGCAAAAAGTTAATACTTTTTAGAAAGGGTTTAACGTTAGTTTTGTCTGATGATATTGATTTAAAAACTAA
TCTTGCTACAGAATTAGCTTCTAAGTACGGGAAGAGGGTATTGCTAGAGACAATTCCATCTGGTAAAAATGAAATCCTTT
GCTCTAGTTTTGACTGGTGGATAATTAATTCTTATTTAATTCAAATTCCAGAACAAATTATCATTCCTTTACTTCCGATT
CCGAATATGTCAGAACCTATTAATGCAATTACAGTCTCTCATAAAAATAAGCTTTCTCAAGATTGGTTTAGAGACTTCTT
TCTTCCTCAAGCCAGAATAAAACTTGAAAGATCTATTTCACCTTTAAGAAGAAATTCAGGTAAGTTAATAATCTTAGATG
GAAGAGCAAATAAAAGAAACTGGGGAAGATTACTTTTGAAAAACATTCAACCCTCAAAACAAATTAACTATATGCTACCT
TTTGAGTAG

Upstream 100 bases:

>100_bases
TTTCATAGATTGATTAATTCAAAACCCTCTTATTTATATTGATACCAATTTTTTGTATATTAGGTTCATAAATTTTGTAT
GTATTTGAAATTAATTATAA

Downstream 100 bases:

>100_bases
GTTATGATTTTGTAAATACCTAAAGAAATATGGGAGAAGCAAAAAGACGTAAAACACTTGGTTTACCTCCAAAAAAAAAT
AATACTACAACTAAAATTGA

Product: hypothetical protein

Products: NA

Alternate protein names: ATP-Dependent DNA Helicase; ATP-Dependent DNA Helicase DinG; Carboxyl-Terminal Protease; Rad3-Like DNA Helicase-Like Protein; DNA Helicase; Rad3-Related DNA Helicases

Number of amino acids: Translated: 482; Mature: 482

Protein sequence:

>482_residues
MLETLSHQYLKNFLRDQSNSWEHIYSFGRIISKCIENDSIYLINSEIFSTYDWIPPIMISLFLKEEDSTFILSKEKIQFI
SQFQIDSLKNLGFNFILKNDQFIFANHHVRLMTIQNLLNDPNSRNLRNHRIVYSGIEDIKEDLKKHFRISLHKKDWTKNF
KEFELINQKFIKVYDSFKKKFFMRKVLGTSYINLDEKEISFFSNFFCENSFFSDKFLSVNKALSQGWACWVKLNDTNLDW
NLYLQPIDELSQIKEFFSNNKFVFLSSLRKDNFFQMYFKKHSLDIDLVINFKSNFEEKKISLYIPSKQLLPNNPLFTNSI
VDKCKKLILFRKGLTLVLSDDIDLKTNLATELASKYGKRVLLETIPSGKNEILCSSFDWWIINSYLIQIPEQIIIPLLPI
PNMSEPINAITVSHKNKLSQDWFRDFFLPQARIKLERSISPLRRNSGKLIILDGRANKRNWGRLLLKNIQPSKQINYMLP
FE

Sequences:

>Translated_482_residues
MLETLSHQYLKNFLRDQSNSWEHIYSFGRIISKCIENDSIYLINSEIFSTYDWIPPIMISLFLKEEDSTFILSKEKIQFI
SQFQIDSLKNLGFNFILKNDQFIFANHHVRLMTIQNLLNDPNSRNLRNHRIVYSGIEDIKEDLKKHFRISLHKKDWTKNF
KEFELINQKFIKVYDSFKKKFFMRKVLGTSYINLDEKEISFFSNFFCENSFFSDKFLSVNKALSQGWACWVKLNDTNLDW
NLYLQPIDELSQIKEFFSNNKFVFLSSLRKDNFFQMYFKKHSLDIDLVINFKSNFEEKKISLYIPSKQLLPNNPLFTNSI
VDKCKKLILFRKGLTLVLSDDIDLKTNLATELASKYGKRVLLETIPSGKNEILCSSFDWWIINSYLIQIPEQIIIPLLPI
PNMSEPINAITVSHKNKLSQDWFRDFFLPQARIKLERSISPLRRNSGKLIILDGRANKRNWGRLLLKNIQPSKQINYMLP
FE
>Mature_482_residues
MLETLSHQYLKNFLRDQSNSWEHIYSFGRIISKCIENDSIYLINSEIFSTYDWIPPIMISLFLKEEDSTFILSKEKIQFI
SQFQIDSLKNLGFNFILKNDQFIFANHHVRLMTIQNLLNDPNSRNLRNHRIVYSGIEDIKEDLKKHFRISLHKKDWTKNF
KEFELINQKFIKVYDSFKKKFFMRKVLGTSYINLDEKEISFFSNFFCENSFFSDKFLSVNKALSQGWACWVKLNDTNLDW
NLYLQPIDELSQIKEFFSNNKFVFLSSLRKDNFFQMYFKKHSLDIDLVINFKSNFEEKKISLYIPSKQLLPNNPLFTNSI
VDKCKKLILFRKGLTLVLSDDIDLKTNLATELASKYGKRVLLETIPSGKNEILCSSFDWWIINSYLIQIPEQIIIPLLPI
PNMSEPINAITVSHKNKLSQDWFRDFFLPQARIKLERSISPLRRNSGKLIILDGRANKRNWGRLLLKNIQPSKQINYMLP
FE

Specific function: Unknown

COG id: COG1199

COG function: function code KL; Rad3-related DNA helicases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 57190; Mature: 57190

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLETLSHQYLKNFLRDQSNSWEHIYSFGRIISKCIENDSIYLINSEIFSTYDWIPPIMIS
CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHCCHHHHHHH
LFLKEEDSTFILSKEKIQFISQFQIDSLKNLGFNFILKNDQFIFANHHVRLMTIQNLLND
HHEECCCCEEEEEHHHHHHHHHHHHHHHHCCCEEEEEECCEEEEECCCEEEEEHHHHHCC
PNSRNLRNHRIVYSGIEDIKEDLKKHFRISLHKKDWTKNFKEFELINQKFIKVYDSFKKK
CCCCCCCCCEEEEHHHHHHHHHHHHHHEEEEECCHHHCCHHHHHHHHHHHHHHHHHHHHH
FFMRKVLGTSYINLDEKEISFFSNFFCENSFFSDKFLSVNKALSQGWACWVKLNDTNLDW
HHHHHHHCCCEECCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCE
NLYLQPIDELSQIKEFFSNNKFVFLSSLRKDNFFQMYFKKHSLDIDLVINFKSNFEEKKI
EEEECCHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEHHCCCEEEEEEEECCCCCCCEE
SLYIPSKQLLPNNPLFTNSIVDKCKKLILFRKGLTLVLSDDIDLKTNLATELASKYGKRV
EEEECCHHCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCEE
LLETIPSGKNEILCSSFDWWIINSYLIQIPEQIIIPLLPIPNMSEPINAITVSHKNKLSQ
EEHHCCCCCCCEEECCCCHHHHHHHHHHCCHHHHEECCCCCCCCCCCCEEEECCCCCCHH
DWFRDFFLPQARIKLERSISPLRRNSGKLIILDGRANKRNWGRLLLKNIQPSKQINYMLP
HHHHHHCCCHHHHHHHHCCCHHHCCCCCEEEEECCCCCCHHHHHHHHCCCCCHHCCEECC
FE
CC
>Mature Secondary Structure
MLETLSHQYLKNFLRDQSNSWEHIYSFGRIISKCIENDSIYLINSEIFSTYDWIPPIMIS
CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHCCHHHHHHH
LFLKEEDSTFILSKEKIQFISQFQIDSLKNLGFNFILKNDQFIFANHHVRLMTIQNLLND
HHEECCCCEEEEEHHHHHHHHHHHHHHHHCCCEEEEEECCEEEEECCCEEEEEHHHHHCC
PNSRNLRNHRIVYSGIEDIKEDLKKHFRISLHKKDWTKNFKEFELINQKFIKVYDSFKKK
CCCCCCCCCEEEEHHHHHHHHHHHHHHEEEEECCHHHCCHHHHHHHHHHHHHHHHHHHHH
FFMRKVLGTSYINLDEKEISFFSNFFCENSFFSDKFLSVNKALSQGWACWVKLNDTNLDW
HHHHHHHCCCEECCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCE
NLYLQPIDELSQIKEFFSNNKFVFLSSLRKDNFFQMYFKKHSLDIDLVINFKSNFEEKKI
EEEECCHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEHHCCCEEEEEEEECCCCCCCEE
SLYIPSKQLLPNNPLFTNSIVDKCKKLILFRKGLTLVLSDDIDLKTNLATELASKYGKRV
EEEECCHHCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCEE
LLETIPSGKNEILCSSFDWWIINSYLIQIPEQIIIPLLPIPNMSEPINAITVSHKNKLSQ
EEHHCCCCCCCEEECCCCHHHHHHHHHHCCHHHHEECCCCCCCCCCCCEEEECCCCCCHH
DWFRDFFLPQARIKLERSISPLRRNSGKLIILDGRANKRNWGRLLLKNIQPSKQINYMLP
HHHHHHCCCHHHHHHHHCCCHHHCCCCCEEEEECCCCCCHHHHHHHHCCCCCHHCCEECC
FE
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA