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The map label for this gene is 78780043

Identifier: 78780043

GI number: 78780043

Start: 1545392

End: 1546897

Strand: Reverse

Name: 78780043

Synonym: PMT9312_1658

Alternate gene names: NA

Gene position: 1546897-1545392 (Counterclockwise)

Preceding gene: 78780045

Following gene: 78780041

Centisome position: 90.5

GC content: 32.6

Gene sequence:

>1506_bases
ATGAGAAAGTCTGAAGTTATTGTTGTAGGCGCCGGTATAGCAGGACTTACTTCTGCAGCGATTTTATCAAAACAAGGCTT
ATCAGTAACTTTAATCGAATCTCATACTCAATCCGGAGGATGTGCCGGTACTTTTAAAAGAAAGAATTATATTTTTGATG
TTGGTGCAACTCAGGTTGCGGGTTTAGAGAAGGGAGGAATACATTCTAGAATTTTTGAATTTTTAGATATTCCATCCCCA
GAAGCCAAAATTTTAGACCCTGCTTGCATTGTTGATTTAAATGATGGTGCTAATCCTATACCTATTTGGTATGAAAAAAG
TAAATGGATTGCTGAACGAGAAATGCAGTTTCCTGGGAGTCAAAGATTTTGGAAACTTTGTACTCTCATACATGAAAGTA
ATTGGATATTTGCTAATAATAATCCTGTATTACCAATAAGTAATTTTTGGGATTTTTCTCAAGTTCTTAAAGCACTAGTA
CCTTCAAACCTTGTCACAGGTATCTTACTTAAATCTACTATTTTTGATTTATTGCGGATATGTGGATTATCTAAGAATGA
ACGATTGATTAAATTCTTAAATCTTCAACTAAAACTTTATTCTCAAGAGGACGTTTATAATACTGCAGCTTTATATGGAT
CTACTGTTCTTCAGATGTGTCAACAGCCACATGGTCTGTGGCATCTTAAAAAATCTATGCAGTCTTTAAGTGAATCATTA
GAAGGTTCATTGATTAAAACTGGAGTTAATTTAATTTTTGGGCAAGAAGTTAATTCTATAACTTTTGACAACGTAAATAT
GTGTTGGAAAGTATCTGCTAATTCGAAAAAAAAATCATTTATTTACCAAGCAAAAGATGTGATTTATACCGCGCCTCCAC
AATCTTTACTCAAGCATTTGAAAGATCCTTTAGAACGAAAAAAAAATTATAAAAATCGACTTAATAATTTGCCTAATCCA
AGTGGAGCTATAGTTTTTTATTCAGCATTAAAAAAAGAACATATTAAAAAAACATTCTCCAATCATTATCAATTTGTTTC
GAAAGAATTTTGTTCGTTATTTGTATCAATTAGTGATGATGGTGATGGAAGAGCGCCAAAAGGTGAGGTTACTTTAATTG
CGAGTATCTTTGCCAAGACTAAAGATTGGTTTGATCTAGATAAACAAACTTACTTAAAGAAGAAAAATAGTTTCATGAAA
AAAATATCGCTTGAATTGGAAAGTCAATTTGATATTGATCCTGAAAAATGGCTTCATAGGGAATTAGCAACTCCATTGGG
CTTTGAAAAATGGACAAAAAGACCTAATGGAATAGTAGGCGGGCTTGGTCAAAAACCAGATATTTTTGGTTTATTTGGAT
TATCAAGTAGGACACCTTTTGAAGGTTTATGGCTATGTGGAGATTCTATTTATCCAGGAGAGGGGACTGCAGGTGTTAGT
CAGTCTGCATTAATGGTTTCAAGGCAAATTTTAGCTTCCAAAGGTATAAAAAATTTTAGTTTATAA

Upstream 100 bases:

>100_bases
AATATCACCACCATGTACTTGTTCAATACTTTTTGGATAAGTTTCACCTAATTCTTCACAAATTTCGTTAATTTCAATAG
GGGATAATTTTTGCATTTTA

Downstream 100 bases:

>100_bases
AATTTTGTCTGTTTTCTTTTGCTTCAGCCAGTTTGTTAGAAAGTAACTCCCAATTTTTTTCTTTAATAAGCGATTCCAGT
ATATTCAGCTTATTTTTAAA

Product: UDP-galactopyranose mutase

Products: NA

Alternate protein names: FAD Dependent Oxidoreductase; C-3 4' Desaturase CrtD; Phytoene Dehydrogenase; Carotenoid Isomerase; Phytoene Dehydrogenase ; Carotene Isomerase; Lycopene Cyclase; Phytoene Dehydrogenase And Related Protein; Phytoene Dehydrogenase And Related Proteins-Like; Phytoene Dehydrogenase And Related Proteins; Phytoene Dehydrogenase-Like; Phytoene Dehydrogenase-Related Protein; Phytoene Dehydrogenase/Carotenoid Isomerase

Number of amino acids: Translated: 501; Mature: 501

Protein sequence:

>501_residues
MRKSEVIVVGAGIAGLTSAAILSKQGLSVTLIESHTQSGGCAGTFKRKNYIFDVGATQVAGLEKGGIHSRIFEFLDIPSP
EAKILDPACIVDLNDGANPIPIWYEKSKWIAEREMQFPGSQRFWKLCTLIHESNWIFANNNPVLPISNFWDFSQVLKALV
PSNLVTGILLKSTIFDLLRICGLSKNERLIKFLNLQLKLYSQEDVYNTAALYGSTVLQMCQQPHGLWHLKKSMQSLSESL
EGSLIKTGVNLIFGQEVNSITFDNVNMCWKVSANSKKKSFIYQAKDVIYTAPPQSLLKHLKDPLERKKNYKNRLNNLPNP
SGAIVFYSALKKEHIKKTFSNHYQFVSKEFCSLFVSISDDGDGRAPKGEVTLIASIFAKTKDWFDLDKQTYLKKKNSFMK
KISLELESQFDIDPEKWLHRELATPLGFEKWTKRPNGIVGGLGQKPDIFGLFGLSSRTPFEGLWLCGDSIYPGEGTAGVS
QSALMVSRQILASKGIKNFSL

Sequences:

>Translated_501_residues
MRKSEVIVVGAGIAGLTSAAILSKQGLSVTLIESHTQSGGCAGTFKRKNYIFDVGATQVAGLEKGGIHSRIFEFLDIPSP
EAKILDPACIVDLNDGANPIPIWYEKSKWIAEREMQFPGSQRFWKLCTLIHESNWIFANNNPVLPISNFWDFSQVLKALV
PSNLVTGILLKSTIFDLLRICGLSKNERLIKFLNLQLKLYSQEDVYNTAALYGSTVLQMCQQPHGLWHLKKSMQSLSESL
EGSLIKTGVNLIFGQEVNSITFDNVNMCWKVSANSKKKSFIYQAKDVIYTAPPQSLLKHLKDPLERKKNYKNRLNNLPNP
SGAIVFYSALKKEHIKKTFSNHYQFVSKEFCSLFVSISDDGDGRAPKGEVTLIASIFAKTKDWFDLDKQTYLKKKNSFMK
KISLELESQFDIDPEKWLHRELATPLGFEKWTKRPNGIVGGLGQKPDIFGLFGLSSRTPFEGLWLCGDSIYPGEGTAGVS
QSALMVSRQILASKGIKNFSL
>Mature_501_residues
MRKSEVIVVGAGIAGLTSAAILSKQGLSVTLIESHTQSGGCAGTFKRKNYIFDVGATQVAGLEKGGIHSRIFEFLDIPSP
EAKILDPACIVDLNDGANPIPIWYEKSKWIAEREMQFPGSQRFWKLCTLIHESNWIFANNNPVLPISNFWDFSQVLKALV
PSNLVTGILLKSTIFDLLRICGLSKNERLIKFLNLQLKLYSQEDVYNTAALYGSTVLQMCQQPHGLWHLKKSMQSLSESL
EGSLIKTGVNLIFGQEVNSITFDNVNMCWKVSANSKKKSFIYQAKDVIYTAPPQSLLKHLKDPLERKKNYKNRLNNLPNP
SGAIVFYSALKKEHIKKTFSNHYQFVSKEFCSLFVSISDDGDGRAPKGEVTLIASIFAKTKDWFDLDKQTYLKKKNSFMK
KISLELESQFDIDPEKWLHRELATPLGFEKWTKRPNGIVGGLGQKPDIFGLFGLSSRTPFEGLWLCGDSIYPGEGTAGVS
QSALMVSRQILASKGIKNFSL

Specific function: Unknown

COG id: COG1233

COG function: function code Q; Phytoene dehydrogenase and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 56021; Mature: 56021

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKSEVIVVGAGIAGLTSAAILSKQGLSVTLIESHTQSGGCAGTFKRKNYIFDVGATQVA
CCCCCEEEEECCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEECCCEEEECCCHHHC
GLEKGGIHSRIFEFLDIPSPEAKILDPACIVDLNDGANPIPIWYEKSKWIAEREMQFPGS
CCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCEEEECCHHHHHHHHCCCCH
QRFWKLCTLIHESNWIFANNNPVLPISNFWDFSQVLKALVPSNLVTGILLKSTIFDLLRI
HHHHHHHHHHHCCCEEEECCCCEEECCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
CGLSKNERLIKFLNLQLKLYSQEDVYNTAALYGSTVLQMCQQPHGLWHLKKSMQSLSESL
HCCCCCHHHHHHHEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
EGSLIKTGVNLIFGQEVNSITFDNVNMCWKVSANSKKKSFIYQAKDVIYTAPPQSLLKHL
CCHHHHHCCCEEECCCCCCEEECCCCEEEEECCCCCHHHHHEECCCEEEECCHHHHHHHH
KDPLERKKNYKNRLNNLPNPSGAIVFYSALKKEHIKKTFSNHYQFVSKEFCSLFVSISDD
HHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCC
GDGRAPKGEVTLIASIFAKTKDWFDLDKQTYLKKKNSFMKKISLELESQFDIDPEKWLHR
CCCCCCCCCEEEHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
ELATPLGFEKWTKRPNGIVGGLGQKPDIFGLFGLSSRTPFEGLWLCGDSIYPGEGTAGVS
HHCCCCCCHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEECCEECCCCCCCCCC
QSALMVSRQILASKGIKNFSL
HHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MRKSEVIVVGAGIAGLTSAAILSKQGLSVTLIESHTQSGGCAGTFKRKNYIFDVGATQVA
CCCCCEEEEECCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEECCCEEEECCCHHHC
GLEKGGIHSRIFEFLDIPSPEAKILDPACIVDLNDGANPIPIWYEKSKWIAEREMQFPGS
CCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCEEEECCHHHHHHHHCCCCH
QRFWKLCTLIHESNWIFANNNPVLPISNFWDFSQVLKALVPSNLVTGILLKSTIFDLLRI
HHHHHHHHHHHCCCEEEECCCCEEECCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
CGLSKNERLIKFLNLQLKLYSQEDVYNTAALYGSTVLQMCQQPHGLWHLKKSMQSLSESL
HCCCCCHHHHHHHEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
EGSLIKTGVNLIFGQEVNSITFDNVNMCWKVSANSKKKSFIYQAKDVIYTAPPQSLLKHL
CCHHHHHCCCEEECCCCCCEEECCCCEEEEECCCCCHHHHHEECCCEEEECCHHHHHHHH
KDPLERKKNYKNRLNNLPNPSGAIVFYSALKKEHIKKTFSNHYQFVSKEFCSLFVSISDD
HHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCC
GDGRAPKGEVTLIASIFAKTKDWFDLDKQTYLKKKNSFMKKISLELESQFDIDPEKWLHR
CCCCCCCCCEEEHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
ELATPLGFEKWTKRPNGIVGGLGQKPDIFGLFGLSSRTPFEGLWLCGDSIYPGEGTAGVS
HHCCCCCCHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEECCEECCCCCCCCCC
QSALMVSRQILASKGIKNFSL
HHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA