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The map label for this gene is rpsT

Identifier: 78779964

GI number: 78779964

Start: 1476485

End: 1476778

Strand: Reverse

Name: rpsT

Synonym: PMT9312_1580

Alternate gene names: 78779964

Gene position: 1476778-1476485 (Counterclockwise)

Preceding gene: 78779966

Following gene: 78779963

Centisome position: 86.4

GC content: 27.21

Gene sequence:

>294_bases
GTGGCCAATAACAAATCAGCAAAAAAGAGAATAAAAATTGCAGAAAGAAATCGTTTAATTAATAAATCATATAAATCTAC
AGTAAGAACATTGACTAAAAAAACCTTAGAGAATTGCGAAAAATATAAAAAAGACCCCAATGATGAGAATAAAGATTTAG
TGAAAACAAGTCTTAATAAGGCTTTTAGTTTAATTGATAAGGCGGTTAAGAAAAATGTACTTCATAAGAATAATGGGGCT
AACAGAAAATCAAAAATTAACAATTTAGTAAAAACTACTCTTGCCACACAGTAA

Upstream 100 bases:

>100_bases
AAAGGCTCGCGACCCAATTTAATACCTTTCTAAATTATATATGATTGATTAGTAGTCGATTTATTTGTTATGATATAAAT
CTTATATTTATGTACCCTCT

Downstream 100 bases:

>100_bases
AAAGGCGGATCATAATTATGAGCGATATTGAACTCATAGACTCGCACTGTCATTTAATATTCGAAAATTTTGATAAAGAT
CTTGAAGATGTTGTTTGTAG

Product: 30S ribosomal protein S20

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 97; Mature: 96

Protein sequence:

>97_residues
MANNKSAKKRIKIAERNRLINKSYKSTVRTLTKKTLENCEKYKKDPNDENKDLVKTSLNKAFSLIDKAVKKNVLHKNNGA
NRKSKINNLVKTTLATQ

Sequences:

>Translated_97_residues
MANNKSAKKRIKIAERNRLINKSYKSTVRTLTKKTLENCEKYKKDPNDENKDLVKTSLNKAFSLIDKAVKKNVLHKNNGA
NRKSKINNLVKTTLATQ
>Mature_96_residues
ANNKSAKKRIKIAERNRLINKSYKSTVRTLTKKTLENCEKYKKDPNDENKDLVKTSLNKAFSLIDKAVKKNVLHKNNGAN
RKSKINNLVKTTLATQ

Specific function: Binds directly to 16S ribosomal RNA [H]

COG id: COG0268

COG function: function code J; Ribosomal protein S20

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S20P family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002583
- ProDom:   PD004231 [H]

Pfam domain/function: PF01649 Ribosomal_S20p [H]

EC number: NA

Molecular weight: Translated: 11101; Mature: 10970

Theoretical pI: Translated: 11.10; Mature: 11.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANNKSAKKRIKIAERNRLINKSYKSTVRTLTKKTLENCEKYKKDPNDENKDLVKTSLNK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
AFSLIDKAVKKNVLHKNNGANRKSKINNLVKTTLATQ
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ANNKSAKKRIKIAERNRLINKSYKSTVRTLTKKTLENCEKYKKDPNDENKDLVKTSLNK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
AFSLIDKAVKKNVLHKNNGANRKSKINNLVKTTLATQ
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA