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The map label for this gene is ycfH [C]

Identifier: 78779963

GI number: 78779963

Start: 1475673

End: 1476467

Strand: Reverse

Name: ycfH [C]

Synonym: PMT9312_1579

Alternate gene names: 78779963

Gene position: 1476467-1475673 (Counterclockwise)

Preceding gene: 78779964

Following gene: 78779962

Centisome position: 86.38

GC content: 32.83

Gene sequence:

>795_bases
ATGAGCGATATTGAACTCATAGACTCGCACTGTCATTTAATATTCGAAAATTTTGATAAAGATCTTGAAGATGTTGTTTG
TAGATTGCGTTCAAAAGGTGTAAAAAAATTAGTTCATGCATGTTGTGAATTAACAGAAATTCCTAAGTTGAAAAAAATAT
CCAATGAATTTAATGAAATTTACTATTCAGTTGGTTTACATCCGCTAGAAGCAGAAAAATGGGAACTAAGTTCCATATCT
CTTTTAAGAAAATCAGCTCAAGAAGATAGAAGAGTTGTAGCTATTGGGGAATTAGGCCTAGATTTTTTTAAAAATGAAAA
TAAAACACAGCAAATTAATGCTCTTATTCCTCAAATGGAGTTAGCTTTTGAACTTGAATTGCCTGTAATTATCCATTGCA
GAGATGCTGCAAATGAAATGATCGAGATATGTAATGACCTCTCTAAAAAGGGAAAATGTCCTAAAGGAGTACTTCATTGC
TGGACAGGGACGCCAAGAGAAATGAAGCAATTCTTGGATCTTGGTTTTTATATAAGTTTTAGTGGAATAGTAACTTTCCC
AAAAGCATATGAAATTCATGAGTGTGCCAAGATAGTCCCAAATGATAAATACTTAATTGAAACTGATTCCCCTTTTTTGG
CTCCTGTTCCCCATAGGGGTAAAAGAAATGAACCTGCATTTGTTGAAAATGTTGCCAACTTTATGGCAGATTTAAGATCA
ACGGAATTAATTACAATCGCTAAACAGTCATCAAAGAATGCTGAAGATTTGTTTAAATTTGACTTGTTAAGTTGA

Upstream 100 bases:

>100_bases
AAAATGTACTTCATAAGAATAATGGGGCTAACAGAAAATCAAAAATTAACAATTTAGTAAAAACTACTCTTGCCACACAG
TAAAAAGGCGGATCATAATT

Downstream 100 bases:

>100_bases
CACCACAGCTGCTAATATAAGAAATTACTGGCAATTTTTTCTTGATTTCTTAGTTTTAACTTTTAAATGAATGGTTTTTG
ACCATTTGGCTAAAATTTTA

Product: putative deoxyribonuclease, TatD family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 263

Protein sequence:

>264_residues
MSDIELIDSHCHLIFENFDKDLEDVVCRLRSKGVKKLVHACCELTEIPKLKKISNEFNEIYYSVGLHPLEAEKWELSSIS
LLRKSAQEDRRVVAIGELGLDFFKNENKTQQINALIPQMELAFELELPVIIHCRDAANEMIEICNDLSKKGKCPKGVLHC
WTGTPREMKQFLDLGFYISFSGIVTFPKAYEIHECAKIVPNDKYLIETDSPFLAPVPHRGKRNEPAFVENVANFMADLRS
TELITIAKQSSKNAEDLFKFDLLS

Sequences:

>Translated_264_residues
MSDIELIDSHCHLIFENFDKDLEDVVCRLRSKGVKKLVHACCELTEIPKLKKISNEFNEIYYSVGLHPLEAEKWELSSIS
LLRKSAQEDRRVVAIGELGLDFFKNENKTQQINALIPQMELAFELELPVIIHCRDAANEMIEICNDLSKKGKCPKGVLHC
WTGTPREMKQFLDLGFYISFSGIVTFPKAYEIHECAKIVPNDKYLIETDSPFLAPVPHRGKRNEPAFVENVANFMADLRS
TELITIAKQSSKNAEDLFKFDLLS
>Mature_263_residues
SDIELIDSHCHLIFENFDKDLEDVVCRLRSKGVKKLVHACCELTEIPKLKKISNEFNEIYYSVGLHPLEAEKWELSSISL
LRKSAQEDRRVVAIGELGLDFFKNENKTQQINALIPQMELAFELELPVIIHCRDAANEMIEICNDLSKKGKCPKGVLHCW
TGTPREMKQFLDLGFYISFSGIVTFPKAYEIHECAKIVPNDKYLIETDSPFLAPVPHRGKRNEPAFVENVANFMADLRST
ELITIAKQSSKNAEDLFKFDLLS

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=270, Percent_Identity=29.6296296296296, Blast_Score=98, Evalue=7e-21,
Organism=Homo sapiens, GI110349734, Length=270, Percent_Identity=29.6296296296296, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI226061853, Length=278, Percent_Identity=30.2158273381295, Blast_Score=95, Evalue=7e-20,
Organism=Homo sapiens, GI14042943, Length=287, Percent_Identity=27.1777003484321, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI226061614, Length=263, Percent_Identity=28.5171102661597, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI225903439, Length=231, Percent_Identity=28.1385281385281, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI226061595, Length=235, Percent_Identity=31.4893617021277, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI225903424, Length=226, Percent_Identity=25.6637168141593, Blast_Score=69, Evalue=3e-12,
Organism=Escherichia coli, GI1787342, Length=260, Percent_Identity=40, Blast_Score=187, Evalue=6e-49,
Organism=Escherichia coli, GI48994985, Length=260, Percent_Identity=31.9230769230769, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI87082439, Length=256, Percent_Identity=28.515625, Blast_Score=119, Evalue=3e-28,
Organism=Caenorhabditis elegans, GI17559024, Length=299, Percent_Identity=28.4280936454849, Blast_Score=120, Evalue=7e-28,
Organism=Caenorhabditis elegans, GI71980746, Length=265, Percent_Identity=30.9433962264151, Blast_Score=114, Evalue=5e-26,
Organism=Drosophila melanogaster, GI221330018, Length=222, Percent_Identity=29.7297297297297, Blast_Score=91, Evalue=8e-19,
Organism=Drosophila melanogaster, GI24586117, Length=222, Percent_Identity=29.7297297297297, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24648690, Length=297, Percent_Identity=29.96632996633, Blast_Score=88, Evalue=5e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 30149; Mature: 30018

Theoretical pI: Translated: 5.65; Mature: 5.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDIELIDSHCHLIFENFDKDLEDVVCRLRSKGVKKLVHACCELTEIPKLKKISNEFNEI
CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
YYSVGLHPLEAEKWELSSISLLRKSAQEDRRVVAIGELGLDFFKNENKTQQINALIPQME
HHHHCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEHHHCHHHHCCCCHHHHHHHHHCCHH
LAFELELPVIIHCRDAANEMIEICNDLSKKGKCPKGVLHCWTGTPREMKQFLDLGFYISF
EEEEECCCEEEEEHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHCCEEEE
SGIVTFPKAYEIHECAKIVPNDKYLIETDSPFLAPVPHRGKRNEPAFVENVANFMADLRS
CCEEECCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
TELITIAKQSSKNAEDLFKFDLLS
CEEEEEECCCCCCHHHHHHHHCCC
>Mature Secondary Structure 
SDIELIDSHCHLIFENFDKDLEDVVCRLRSKGVKKLVHACCELTEIPKLKKISNEFNEI
CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
YYSVGLHPLEAEKWELSSISLLRKSAQEDRRVVAIGELGLDFFKNENKTQQINALIPQME
HHHHCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEHHHCHHHHCCCCHHHHHHHHHCCHH
LAFELELPVIIHCRDAANEMIEICNDLSKKGKCPKGVLHCWTGTPREMKQFLDLGFYISF
EEEEECCCEEEEEHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHCCEEEE
SGIVTFPKAYEIHECAKIVPNDKYLIETDSPFLAPVPHRGKRNEPAFVENVANFMADLRS
CCEEECCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
TELITIAKQSSKNAEDLFKFDLLS
CEEEEEECCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]