Click here to switch to the map view.

The map label for this gene is 78779936

Identifier: 78779936

GI number: 78779936

Start: 1445555

End: 1446211

Strand: Direct

Name: 78779936

Synonym: PMT9312_1552

Alternate gene names: NA

Gene position: 1445555-1446211 (Clockwise)

Preceding gene: 78779935

Following gene: 78779937

Centisome position: 84.57

GC content: 34.4

Gene sequence:

>657_bases
ATGCAGAATGGTCTTAATAGTCCTGGTCCATTTACTATATTTTTGGTTTTCAGCGCAGGACTATTAACGAGTCTTGGACC
ATGTTCATTATCATTACTTCCAGTAACAATTGCTTATATAGGAGGAACAGAGAAAAATAAATTTAAACTTATTAGTTTTT
CAGGAGGAGTAGTTTTTTCGCTTGTTGCACTGGGGGCTGCGAGTGGATTCTTAGGTAAAATATATGGGCAAATTCCATCT
TATTACACATCATTTGTTGCCCTAATAGCAATAATAATGGGTTTAAATTTATTAGGAATTCTAAAGTTTCAGTTTCCGAA
TGGACCCGATCTAAAAAAAATAGAAGAAAAAATACCACCCCTCTTAGCACCTTTTACAATAGGAACTACTTTTGGACTAG
CCTCTTCACCTTGCATCACTCCAGTTTTAGCTACTCTTTTGGCTTGGGTATCGCAAGCTAAAAACCCAATAATCTCAATT
ATTTTTTTATTTTTCTTCGGAATAGGCCAAGTCACTCCATTAATCATTGCGGGAGCCACGGCAGAAAACTTAAAAAAATT
TTTAGAGCTTAGAAAATTTAGCCAAATAATTCCCACCTTAAGTGGGATATTTTTAGTTGCCCTAGGATTATTAAATTTAT
TTTCAAATTGGATCTAA

Upstream 100 bases:

>100_bases
CGAAAGACTCTTAATTAGTTAGAATTTAAAGGATTAAAGTCAAACTATCGAATCATTTAATTTAGTTATTTCAGAATTAT
CTCAAAAGGGTAATCTGCTT

Downstream 100 bases:

>100_bases
ATGATTATTTTTAAGAATCTAATTTTAAAAATATCAAGTTTAAGATTCGCTATATCACTGATAATCTTCATAGCCATTAC
AAGTGGCATAGGTACTTTTA

Product: putative c-type cytochrome biogenesis protein CcdA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MQNGLNSPGPFTIFLVFSAGLLTSLGPCSLSLLPVTIAYIGGTEKNKFKLISFSGGVVFSLVALGAASGFLGKIYGQIPS
YYTSFVALIAIIMGLNLLGILKFQFPNGPDLKKIEEKIPPLLAPFTIGTTFGLASSPCITPVLATLLAWVSQAKNPIISI
IFLFFFGIGQVTPLIIAGATAENLKKFLELRKFSQIIPTLSGIFLVALGLLNLFSNWI

Sequences:

>Translated_218_residues
MQNGLNSPGPFTIFLVFSAGLLTSLGPCSLSLLPVTIAYIGGTEKNKFKLISFSGGVVFSLVALGAASGFLGKIYGQIPS
YYTSFVALIAIIMGLNLLGILKFQFPNGPDLKKIEEKIPPLLAPFTIGTTFGLASSPCITPVLATLLAWVSQAKNPIISI
IFLFFFGIGQVTPLIIAGATAENLKKFLELRKFSQIIPTLSGIFLVALGLLNLFSNWI
>Mature_218_residues
MQNGLNSPGPFTIFLVFSAGLLTSLGPCSLSLLPVTIAYIGGTEKNKFKLISFSGGVVFSLVALGAASGFLGKIYGQIPS
YYTSFVALIAIIMGLNLLGILKFQFPNGPDLKKIEEKIPPLLAPFTIGTTFGLASSPCITPVLATLLAWVSQAKNPIISI
IFLFFFGIGQVTPLIIAGATAENLKKFLELRKFSQIIPTLSGIFLVALGLLNLFSNWI

Specific function: Could be involved in cytochrome c synthesis [H]

COG id: COG0785

COG function: function code O; Cytochrome c biogenesis protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DsbD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003834 [H]

Pfam domain/function: PF02683 DsbD [H]

EC number: NA

Molecular weight: Translated: 23218; Mature: 23218

Theoretical pI: Translated: 10.11; Mature: 10.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNGLNSPGPFTIFLVFSAGLLTSLGPCSLSLLPVTIAYIGGTEKNKFKLISFSGGVVFS
CCCCCCCCCCEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHH
LVALGAASGFLGKIYGQIPSYYTSFVALIAIIMGLNLLGILKFQFPNGPDLKKIEEKIPP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHCCC
LLAPFTIGTTFGLASSPCITPVLATLLAWVSQAKNPIISIIFLFFFGIGQVTPLIIAGAT
CCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEECCC
AENLKKFLELRKFSQIIPTLSGIFLVALGLLNLFSNWI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQNGLNSPGPFTIFLVFSAGLLTSLGPCSLSLLPVTIAYIGGTEKNKFKLISFSGGVVFS
CCCCCCCCCCEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHH
LVALGAASGFLGKIYGQIPSYYTSFVALIAIIMGLNLLGILKFQFPNGPDLKKIEEKIPP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHCCC
LLAPFTIGTTFGLASSPCITPVLATLLAWVSQAKNPIISIIFLFFFGIGQVTPLIIAGAT
CCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEECCC
AENLKKFLELRKFSQIIPTLSGIFLVALGLLNLFSNWI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]