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The map label for this gene is ccsB [H]

Identifier: 78779937

GI number: 78779937

Start: 1446212

End: 1447498

Strand: Direct

Name: ccsB [H]

Synonym: PMT9312_1553

Alternate gene names: 78779937

Gene position: 1446212-1447498 (Clockwise)

Preceding gene: 78779936

Following gene: 78779939

Centisome position: 84.61

GC content: 27.35

Gene sequence:

>1287_bases
ATGATTATTTTTAAGAATCTAATTTTAAAAATATCAAGTTTAAGATTCGCTATATCACTGATAATCTTCATAGCCATTAC
AAGTGGCATAGGTACTTTTATACCTCAAGGTAATAGTAATAAATTCTATATTGATAATTTCGATAGTGCTCCCATTTTTG
GATTTTTAGATGGAGAAAAAGTCTTAAAACTTCAATTGGATCATATATATACAAGCATTTGGTTTTTATTTACATTAATT
CTTCTTTGCATTTCCTTATCAGCTTGTAGTTTCAGGAGACAAATTCCTTCATTAAAAGCTTCATTAAAATGGATTGAATA
CAATAACGAAAAAAAATTTAGCAAACTGCAATTAACTTCAAGTCACCCAATCAATCAAGATGGAGACCATATATCAAAAG
TAGATTTATTACTTAAAAAAAGAGGATGGAAAACATACAAATTTAAAAGTCATATTTCTGCAAGAAGGGGTTTAATTGGA
AAAATCGGTCCTTTAGTTGTACATATCGGATTAATAGTCTTGCTTCTAGGTTCAGCATATGGAAGTTTTACAAGTCAATC
AAATGAACAATATTTATTGCCTGGAGAAAGTTTGGATCTTGTTAATGAGAGTACAAACTCAAAAGCGAATATTAAATTAG
TCAATTTTTCTATAGAACGAGAAAGTGATGGTATACCCAAACAGTTTATTTCAAAGTTAAATTTTTCTTCTGAAGATCTA
AATATAAATGAAATTAAAACCGCCAAAGTTAATCACCCAATCAGATTTAAAGGATTAACTATTTATCAAGCTGATTGGGC
AATATCAAATGTTGTTTTAGAAATAGATAATATCCTTTATCAATTACAATTAAAGGAGATTCCCGAAATCGGCAATCAAG
TTTGGGGAGTTTTAGTTGAATTAGGATCAGAGACAAAAAAAAATTTCCTTTTAACAATAGATAATGAAAATGGTCCTCTT
AAAATTTCCAATGTAGAAAATTTTTCCGGGAATAATCTCTATATCAATGACAGACCCTTAGAAGTTAACTCTTCAAAAGT
ATCTCTGAAAAAAATAATCCCAAGCAGTGGATTAATAATTAAAAATGATCCTTCTATACCATTTATTTACTTTTCTTTTA
TTTTAATAATTTTTGGAACAATAATAAGTCTTATACCAACTAACCAATTATGGATTTTTGTGAATAAAGAATCACACAAG
TTATCCATTGGAGGTCTTAGCAATAAAAATCTAGTTGGTTTTAAAAAAGAATTTTTTAAATTATCAGAAGAAATAAAAAA
TTTTTAA

Upstream 100 bases:

>100_bases
ATTTTTAGAGCTTAGAAAATTTAGCCAAATAATTCCCACCTTAAGTGGGATATTTTTAGTTGCCCTAGGATTATTAAATT
TATTTTCAAATTGGATCTAA

Downstream 100 bases:

>100_bases
TTTCTTTTCTGTCCACTAAAAATATCTAACTGCATTGAAACATTCCCCCTAGGGTTAAATGCAGCATTTAAATGTATCCA
GTGAGGTGAGCCTTCATTCA

Product: putative c-type cytochrome biogenesis protein Ccs1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 428; Mature: 428

Protein sequence:

>428_residues
MIIFKNLILKISSLRFAISLIIFIAITSGIGTFIPQGNSNKFYIDNFDSAPIFGFLDGEKVLKLQLDHIYTSIWFLFTLI
LLCISLSACSFRRQIPSLKASLKWIEYNNEKKFSKLQLTSSHPINQDGDHISKVDLLLKKRGWKTYKFKSHISARRGLIG
KIGPLVVHIGLIVLLLGSAYGSFTSQSNEQYLLPGESLDLVNESTNSKANIKLVNFSIERESDGIPKQFISKLNFSSEDL
NINEIKTAKVNHPIRFKGLTIYQADWAISNVVLEIDNILYQLQLKEIPEIGNQVWGVLVELGSETKKNFLLTIDNENGPL
KISNVENFSGNNLYINDRPLEVNSSKVSLKKIIPSSGLIIKNDPSIPFIYFSFILIIFGTIISLIPTNQLWIFVNKESHK
LSIGGLSNKNLVGFKKEFFKLSEEIKNF

Sequences:

>Translated_428_residues
MIIFKNLILKISSLRFAISLIIFIAITSGIGTFIPQGNSNKFYIDNFDSAPIFGFLDGEKVLKLQLDHIYTSIWFLFTLI
LLCISLSACSFRRQIPSLKASLKWIEYNNEKKFSKLQLTSSHPINQDGDHISKVDLLLKKRGWKTYKFKSHISARRGLIG
KIGPLVVHIGLIVLLLGSAYGSFTSQSNEQYLLPGESLDLVNESTNSKANIKLVNFSIERESDGIPKQFISKLNFSSEDL
NINEIKTAKVNHPIRFKGLTIYQADWAISNVVLEIDNILYQLQLKEIPEIGNQVWGVLVELGSETKKNFLLTIDNENGPL
KISNVENFSGNNLYINDRPLEVNSSKVSLKKIIPSSGLIIKNDPSIPFIYFSFILIIFGTIISLIPTNQLWIFVNKESHK
LSIGGLSNKNLVGFKKEFFKLSEEIKNF
>Mature_428_residues
MIIFKNLILKISSLRFAISLIIFIAITSGIGTFIPQGNSNKFYIDNFDSAPIFGFLDGEKVLKLQLDHIYTSIWFLFTLI
LLCISLSACSFRRQIPSLKASLKWIEYNNEKKFSKLQLTSSHPINQDGDHISKVDLLLKKRGWKTYKFKSHISARRGLIG
KIGPLVVHIGLIVLLLGSAYGSFTSQSNEQYLLPGESLDLVNESTNSKANIKLVNFSIERESDGIPKQFISKLNFSSEDL
NINEIKTAKVNHPIRFKGLTIYQADWAISNVVLEIDNILYQLQLKEIPEIGNQVWGVLVELGSETKKNFLLTIDNENGPL
KISNVENFSGNNLYINDRPLEVNSSKVSLKKIIPSSGLIIKNDPSIPFIYFSFILIIFGTIISLIPTNQLWIFVNKESHK
LSIGGLSNKNLVGFKKEFFKLSEEIKNF

Specific function: Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment [H]

COG id: COG1333

COG function: function code O; ResB protein required for cytochrome c biosynthesis

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccs1/ccsB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007816 [H]

Pfam domain/function: PF05140 ResB [H]

EC number: NA

Molecular weight: Translated: 48338; Mature: 48338

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.2 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.2 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIFKNLILKISSLRFAISLIIFIAITSGIGTFIPQGNSNKFYIDNFDSAPIFGFLDGEK
CEEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCEEEEECCCCCCEEEEECCCE
VLKLQLDHIYTSIWFLFTLILLCISLSACSFRRQIPSLKASLKWIEYNNEKKFSKLQLTS
EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEEEECCCCCEEEEEEEC
SHPINQDGDHISKVDLLLKKRGWKTYKFKSHISARRGLIGKIGPLVVHIGLIVLLLGSAY
CCCCCCCCCHHHHHHHHHHHCCCCEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
GSFTSQSNEQYLLPGESLDLVNESTNSKANIKLVNFSIERESDGIPKQFISKLNFSSEDL
CCCCCCCCCEEECCCCCCHHCCCCCCCCEEEEEEEEEEECCCCCCHHHHHHHCCCCCCCC
NINEIKTAKVNHPIRFKGLTIYQADWAISNVVLEIDNILYQLQLKEIPEIGNQVWGVLVE
CCCEEEEEECCCCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGSETKKNFLLTIDNENGPLKISNVENFSGNNLYINDRPLEVNSSKVSLKKIIPSSGLII
HCCCCCCCEEEEEECCCCCEEEECCCCCCCCEEEECCCCEEECCCCEEHHHHCCCCCEEE
KNDPSIPFIYFSFILIIFGTIISLIPTNQLWIFVNKESHKLSIGGLSNKNLVGFKKEFFK
ECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEECCCCCCCCCCHHHHHHH
LSEEIKNF
HHHHHHCC
>Mature Secondary Structure
MIIFKNLILKISSLRFAISLIIFIAITSGIGTFIPQGNSNKFYIDNFDSAPIFGFLDGEK
CEEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCEEEEECCCCCCEEEEECCCE
VLKLQLDHIYTSIWFLFTLILLCISLSACSFRRQIPSLKASLKWIEYNNEKKFSKLQLTS
EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEEEECCCCCEEEEEEEC
SHPINQDGDHISKVDLLLKKRGWKTYKFKSHISARRGLIGKIGPLVVHIGLIVLLLGSAY
CCCCCCCCCHHHHHHHHHHHCCCCEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
GSFTSQSNEQYLLPGESLDLVNESTNSKANIKLVNFSIERESDGIPKQFISKLNFSSEDL
CCCCCCCCCEEECCCCCCHHCCCCCCCCEEEEEEEEEEECCCCCCHHHHHHHCCCCCCCC
NINEIKTAKVNHPIRFKGLTIYQADWAISNVVLEIDNILYQLQLKEIPEIGNQVWGVLVE
CCCEEEEEECCCCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGSETKKNFLLTIDNENGPLKISNVENFSGNNLYINDRPLEVNSSKVSLKKIIPSSGLII
HCCCCCCCEEEEEECCCCCEEEECCCCCCCCEEEECCCCEEECCCCEEHHHHCCCCCEEE
KNDPSIPFIYFSFILIIFGTIISLIPTNQLWIFVNKESHKLSIGGLSNKNLVGFKKEFFK
ECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEECCCCCCCCCCHHHHHHH
LSEEIKNF
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA