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The map label for this gene is atpC

Identifier: 78779916

GI number: 78779916

Start: 1429514

End: 1429918

Strand: Direct

Name: atpC

Synonym: PMT9312_1532

Alternate gene names: 78779916

Gene position: 1429514-1429918 (Clockwise)

Preceding gene: 78779915

Following gene: 78779920

Centisome position: 83.64

GC content: 35.06

Gene sequence:

>405_bases
ATGCCAATTTCTCTCAAAGTTTTAGCTCCTAACAAAAATGTTTATCAAGGCGAAGCTGAAGAAGTAATTCTTCCTAGTAC
TACTGGGCAACTGGGTGTACTTCCTGGACATATTTCTTTAGTTACAGCTATTGATATTGGCGTTTTAAGGCTAAGAATGA
ATTCCCAGTGGCAATCAATAGCTTTAATGGGTGGCTTCGCTGAAATTGAATCAGATGAAGTAATAGTTTTAGTAAACAAC
GCAGAAATTGGATCTGATATTGATGTTCAAAATGCTGAACAAGATCTCAAAGAAGCAAAATTAGTAATGACTAAATTTCC
TGAAAATGAAAAAAATTCAGAGAAAATCAAAGCCCTTCAGGAGATTTCAAAGGCTGAGGCTAGAATACAAGCTGCAAAAA
ACTAA

Upstream 100 bases:

>100_bases
TGGTTGGTAACATTGATGAAGTCAAAGCAAAGGCTGAAAAACTAAAGTCAGAAAAATAAATACCTAAAATATTTTTTTAA
CCTTCAATAATTTTAAATTA

Downstream 100 bases:

>100_bases
TTTTTATGCAGTTCCACAAAAAGTTACTTCAGGAAACTTTAGCTTGGCTTCTTCTAATTTTTTAGTTTTACCCTCTTCTT
GCCAATAATTAATTACTTCT

Product: F0F1 ATP synthase subunit epsilon

Products: ADP; phosphate; H+

Alternate protein names: ATP synthase F1 sector epsilon subunit; F-ATPase epsilon subunit

Number of amino acids: Translated: 134; Mature: 133

Protein sequence:

>134_residues
MPISLKVLAPNKNVYQGEAEEVILPSTTGQLGVLPGHISLVTAIDIGVLRLRMNSQWQSIALMGGFAEIESDEVIVLVNN
AEIGSDIDVQNAEQDLKEAKLVMTKFPENEKNSEKIKALQEISKAEARIQAAKN

Sequences:

>Translated_134_residues
MPISLKVLAPNKNVYQGEAEEVILPSTTGQLGVLPGHISLVTAIDIGVLRLRMNSQWQSIALMGGFAEIESDEVIVLVNN
AEIGSDIDVQNAEQDLKEAKLVMTKFPENEKNSEKIKALQEISKAEARIQAAKN
>Mature_133_residues
PISLKVLAPNKNVYQGEAEEVILPSTTGQLGVLPGHISLVTAIDIGVLRLRMNSQWQSIALMGGFAEIESDEVIVLVNNA
EIGSDIDVQNAEQDLKEAKLVMTKFPENEKNSEKIKALQEISKAEARIQAAKN

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane

COG id: COG0355

COG function: function code C; F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit)

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase epsilon chain family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ATPE_PROM9 (Q318V3)

Other databases:

- EMBL:   CP000111
- RefSeq:   YP_398028.1
- ProteinModelPortal:   Q318V3
- SMR:   Q318V3
- STRING:   Q318V3
- GeneID:   3766349
- GenomeReviews:   CP000111_GR
- KEGG:   pmi:PMT9312_1532
- eggNOG:   COG0355
- HOGENOM:   HBG663981
- OMA:   NNAEIGS
- ProtClustDB:   PRK00571
- BioCyc:   PMAR74546:PMT9312_1532-MONOMER
- HAMAP:   MF_00530
- InterPro:   IPR001469
- InterPro:   IPR020547
- InterPro:   IPR020546
- Gene3D:   G3DSA:2.60.15.10
- PANTHER:   PTHR13822
- ProDom:   PD000944
- TIGRFAMs:   TIGR01216

Pfam domain/function: PF00401 ATP-synt_DE; PF02823 ATP-synt_DE_N; SSF51344 ATPsynt_DE

EC number: 3.6.3.14

Molecular weight: Translated: 14596; Mature: 14465

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPISLKVLAPNKNVYQGEAEEVILPSTTGQLGVLPGHISLVTAIDIGVLRLRMNSQWQSI
CCEEEEEECCCCCCCCCCCCEEEECCCCCCEEECCCCCEEEEHHHEEEEEEEECCCCEEE
ALMGGFAEIESDEVIVLVNNAEIGSDIDVQNAEQDLKEAKLVMTKFPENEKNSEKIKALQ
EEECCCEECCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHEEECCCCCCCHHHHHHHH
EISKAEARIQAAKN
HHHHHHHHHHCCCC
>Mature Secondary Structure 
PISLKVLAPNKNVYQGEAEEVILPSTTGQLGVLPGHISLVTAIDIGVLRLRMNSQWQSI
CEEEEEECCCCCCCCCCCCEEEECCCCCCEEECCCCCEEEEHHHEEEEEEEECCCCEEE
ALMGGFAEIESDEVIVLVNNAEIGSDIDVQNAEQDLKEAKLVMTKFPENEKNSEKIKALQ
EEECCCEECCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHEEECCCCCCCHHHHHHHH
EISKAEARIQAAKN
HHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: Borate; diphosphate; HCO3- [C]

Metal ions: Co2+; Fe2+; Mn2+; Zn2+ [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; H+

Specific reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out)

General reaction: Phosphorous acid anhydride hydrolysis [C]

Inhibitor: Ca2+; CN-; Efrapeptin; Ethidiumbromide; Guanidines analogs; Oligomycin; Quercetin; Trialkyl tin derivatives; Venturicidin [C]

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA