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The map label for this gene is 78779860

Identifier: 78779860

GI number: 78779860

Start: 1385670

End: 1386845

Strand: Direct

Name: 78779860

Synonym: PMT9312_1476

Alternate gene names: NA

Gene position: 1385670-1386845 (Clockwise)

Preceding gene: 78779859

Following gene: 78779863

Centisome position: 81.07

GC content: 33.08

Gene sequence:

>1176_bases
TTGAGTAATATAAAATTTTCAGGTCTTAAAGGCCAAGCGCTTGCAATAGAGAATAAAGATATTCCAAGCCTCAAAGAATT
TAAGGATGTTATCCCAAATCACTATTTCAAGTGCAACACGAAAACTTCTTTAAGGTATCTTTTACAATCAGCTTTAATTC
AATTTGTTGTAGTTTTAATAGGTTTATCTATTCCATTTACTCCAAAAATGATCCCAATTTGGATCATTTTCTCATTACTA
TCAGGTACCACTATGATGGGATTCTGGGTAATTGCCCATGAATGTGGACATGGAGCATTTTCTAAAAACAAAACATTGGA
AACTATAACTGGATATTTACTACATTCATTACTACTAGTTCCTTATTTCTCTTGGCAACGTTCTCATGCAGTTCATCATC
GATTTACAAATAATGTAACCAATGGCGAAACTCACGTTCCTTTAGTTGTTGAGGGAAACGGAGTTACAGAAAAGGTTGGA
GGAGAAAGAGAGTTACATTTTTCAAATTCCATAGGTAAGAAAAATTATGGAATTCTTCAACTTGTTTTACATCTAATATT
TGGCTGGCCTGCTTATTTACTTACAGGTAGTACCGGAGGTACTAAATATGGAACTTCGAATCATTTTTGGCCAATCAAAC
CATTTTCCAAATCATTATGGCCATCAATATGGACTAAGAAAGTTTGGATATCAGATATAGGAGTAGGTTTAACATTATTA
GGCATTTTTTTCTTTGTTTTTAAATATGGATTATTTCCAGTAATTGCAATTTATATTGGTCCTTTATTAGTAGTTAATAG
TTGGTTAGTAGTTTATACATGGCTTCATCATACAGATTCAGATGTCCCCCATCTTTCAAATACGAAATTTTCATTTATGA
AAGGAGCCTTTCTATCTATTGACAGGCCTTACGGTAAAATTCTTAATTTTCTGCATCATAATATTGGTTCGAGCCATGTA
GTTCATCATGTCTGTCCAACCATTCCTCACTATCATGCTAAAAAGGCTACCGTCTTAATTAAAAAAGCCTTTAAAAAGGC
ATATCTTTTTAATCCTGATCCTGTCCCTAAAGCACTTTGGAATATAGCTTGCAATTGCGTAGCTGTTAAGTCAGATATCA
AAGAAGGTAGATATATCTGGCAATCTTCGTACAATAAAAGAGGATTTAAAACATAA

Upstream 100 bases:

>100_bases
ATTCTTTTGATAAGAAGATCTTCTGATGGATAATAGAATATGTAAATTGATTTTTATTTAACAAAATTCTTACCTAACAA
AATTCTTACCTAACAAAAAT

Downstream 100 bases:

>100_bases
TTTGTCTTGATCACATTAGTTTACGCAAATCTGAAAAAAATATAAAATAATTAACAAAATCCTAATTTTCATATTAAAAA
TAATCTGATTTATTATTTTA

Product: Delta(12)-fatty acid dehydrogenase

Products: NA

Alternate protein names: Delta(12)-Fatty Acid Dehydrogenase; Omega-3 Fatty Acid Desaturase; Fatty Acid Desaturase Domain Protein; Omega-3 Acyl-Lipid Desaturase; Omega 3 Acyl-Lipid Desaturase; Phosphatidylcholine Desaturase

Number of amino acids: Translated: 391; Mature: 390

Protein sequence:

>391_residues
MSNIKFSGLKGQALAIENKDIPSLKEFKDVIPNHYFKCNTKTSLRYLLQSALIQFVVVLIGLSIPFTPKMIPIWIIFSLL
SGTTMMGFWVIAHECGHGAFSKNKTLETITGYLLHSLLLVPYFSWQRSHAVHHRFTNNVTNGETHVPLVVEGNGVTEKVG
GERELHFSNSIGKKNYGILQLVLHLIFGWPAYLLTGSTGGTKYGTSNHFWPIKPFSKSLWPSIWTKKVWISDIGVGLTLL
GIFFFVFKYGLFPVIAIYIGPLLVVNSWLVVYTWLHHTDSDVPHLSNTKFSFMKGAFLSIDRPYGKILNFLHHNIGSSHV
VHHVCPTIPHYHAKKATVLIKKAFKKAYLFNPDPVPKALWNIACNCVAVKSDIKEGRYIWQSSYNKRGFKT

Sequences:

>Translated_391_residues
MSNIKFSGLKGQALAIENKDIPSLKEFKDVIPNHYFKCNTKTSLRYLLQSALIQFVVVLIGLSIPFTPKMIPIWIIFSLL
SGTTMMGFWVIAHECGHGAFSKNKTLETITGYLLHSLLLVPYFSWQRSHAVHHRFTNNVTNGETHVPLVVEGNGVTEKVG
GERELHFSNSIGKKNYGILQLVLHLIFGWPAYLLTGSTGGTKYGTSNHFWPIKPFSKSLWPSIWTKKVWISDIGVGLTLL
GIFFFVFKYGLFPVIAIYIGPLLVVNSWLVVYTWLHHTDSDVPHLSNTKFSFMKGAFLSIDRPYGKILNFLHHNIGSSHV
VHHVCPTIPHYHAKKATVLIKKAFKKAYLFNPDPVPKALWNIACNCVAVKSDIKEGRYIWQSSYNKRGFKT
>Mature_390_residues
SNIKFSGLKGQALAIENKDIPSLKEFKDVIPNHYFKCNTKTSLRYLLQSALIQFVVVLIGLSIPFTPKMIPIWIIFSLLS
GTTMMGFWVIAHECGHGAFSKNKTLETITGYLLHSLLLVPYFSWQRSHAVHHRFTNNVTNGETHVPLVVEGNGVTEKVGG
ERELHFSNSIGKKNYGILQLVLHLIFGWPAYLLTGSTGGTKYGTSNHFWPIKPFSKSLWPSIWTKKVWISDIGVGLTLLG
IFFFVFKYGLFPVIAIYIGPLLVVNSWLVVYTWLHHTDSDVPHLSNTKFSFMKGAFLSIDRPYGKILNFLHHNIGSSHVV
HHVCPTIPHYHAKKATVLIKKAFKKAYLFNPDPVPKALWNIACNCVAVKSDIKEGRYIWQSSYNKRGFKT

Specific function: Unknown

COG id: COG3239

COG function: function code I; Fatty acid desaturase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Caenorhabditis elegans, GI17542730, Length=343, Percent_Identity=30.0291545189504, Blast_Score=130, Evalue=1e-30,
Organism=Caenorhabditis elegans, GI71999459, Length=346, Percent_Identity=28.6127167630058, Blast_Score=115, Evalue=3e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 1.14.99.-

Molecular weight: Translated: 44229; Mature: 44098

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNIKFSGLKGQALAIENKDIPSLKEFKDVIPNHYFKCNTKTSLRYLLQSALIQFVVVLI
CCCCCCCCCCCCEEEECCCCCCCHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHH
GLSIPFTPKMIPIWIIFSLLSGTTMMGFWVIAHECGHGAFSKNKTLETITGYLLHSLLLV
HCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
PYFSWQRSHAVHHRFTNNVTNGETHVPLVVEGNGVTEKVGGERELHFSNSIGKKNYGILQ
HHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCHHHCCCCEEEEECCCCCCCCCHHHH
LVLHLIFGWPAYLLTGSTGGTKYGTSNHFWPIKPFSKSLWPSIWTKKVWISDIGVGLTLL
HHHHHHHCCHHHEEECCCCCCCCCCCCCCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHH
GIFFFVFKYGLFPVIAIYIGPLLVVNSWLVVYTWLHHTDSDVPHLSNTKFSFMKGAFLSI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCEEC
DRPYGKILNFLHHNIGSSHVVHHVCPTIPHYHAKKATVLIKKAFKKAYLFNPDPVPKALW
CCCHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHH
NIACNCVAVKSDIKEGRYIWQSSYNKRGFKT
HHHHHHHEEHHHHHCCHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SNIKFSGLKGQALAIENKDIPSLKEFKDVIPNHYFKCNTKTSLRYLLQSALIQFVVVLI
CCCCCCCCCCCEEEECCCCCCCHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHH
GLSIPFTPKMIPIWIIFSLLSGTTMMGFWVIAHECGHGAFSKNKTLETITGYLLHSLLLV
HCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
PYFSWQRSHAVHHRFTNNVTNGETHVPLVVEGNGVTEKVGGERELHFSNSIGKKNYGILQ
HHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCHHHCCCCEEEEECCCCCCCCCHHHH
LVLHLIFGWPAYLLTGSTGGTKYGTSNHFWPIKPFSKSLWPSIWTKKVWISDIGVGLTLL
HHHHHHHCCHHHEEECCCCCCCCCCCCCCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHH
GIFFFVFKYGLFPVIAIYIGPLLVVNSWLVVYTWLHHTDSDVPHLSNTKFSFMKGAFLSI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCEEC
DRPYGKILNFLHHNIGSSHVVHHVCPTIPHYHAKKATVLIKKAFKKAYLFNPDPVPKALW
CCCHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHH
NIACNCVAVKSDIKEGRYIWQSSYNKRGFKT
HHHHHHHEEHHHHHCCHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA