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The map label for this gene is kaiC [H]

Identifier: 78779824

GI number: 78779824

Start: 1354118

End: 1355614

Strand: Reverse

Name: kaiC [H]

Synonym: PMT9312_1440

Alternate gene names: 78779824

Gene position: 1355614-1354118 (Counterclockwise)

Preceding gene: 78779825

Following gene: 78779821

Centisome position: 79.31

GC content: 34.94

Gene sequence:

>1497_bases
ATGCAAGTACAAAAATTGCCTACAGGTATAGAAGGCTTCGATGATGTTTGCAGAGGTGGTTTGCCTGTATCTCGAAGTAC
ACTTATTAGTGGTACTTCAGGTACTGGCAAAACTGTTTTTTCGCTTCAATACTTGCACCATGGAATTTGCAACTTTGATG
AGCCTGGTATCTTCGTTACATTTGAGGAGTCCCCTTTAGATATCATTAGAAATGCTGCAAGTTTTGGTTGGGATTTACAA
GAATTAATTGATCAAAATAAACTTTTTATTTTAGATGCTTCTCCTGACCCCGATGGTCAAGATGTTGCGGGCAACTTTGA
CTTATCTGGTCTTATTGAAAGAATTAGTTATGCGATTAGAAAATATAAAGCTAAAAGAGTTGCAATAGATTCAATAACTG
CAGTTTTTCAACAGTATGACGCCATTTACGTTGTTAGAAGAGAAATTTTTAGACTAATAGCAAGATTAAAAGAAATAGGA
GTAACAACAGTTATGACTACAGAAAGGGTTGATGATTATGGACCTATTGCTAGGTATGGAGTAGAAGAATTTGTATCTGA
TAATGTTGTCTTATTAAGAAATGTTCTTGAGTCAGAGAAGAGAAGAAGAACTTTAGAAGTTTTGAAGTTAAGAGGAACTG
TACATATGAAAGGAGAATATCCATTCACTATGGGAGCCGATGGTATAAGTGTATTCGCACTTGGAGCAATGCGATTAACA
CAGCGATCCTCAAATATTAGGATTAGCTCTGGAGTGAAAGATCTTGATGATATGTGTGGTGGAGGATATTTTCAAGATTC
GATTATCCTTGCCACAGGAGCTACTGGTACAGGTAAGACAATGCTCGTATCAAAATTTGTGGAAGATGCGTATAACAACA
ATGAAAGAGCAATACTTTTTGCATATGAAGAATCCAGGGCTCAATTGCTTAGGAATGCTACTAGTTGGGGAATAGACTTT
GAAAAGATGGAAAGTGATGGGTTATTAAAAATTATTTGTGCATATCCTGAATCAACTGGTTTGGAAGATCACTTACAAAT
AATAAAAACGCAAATTAATCAATTTAAACCCAAGAGAATGGCAATAGATTCTCTCTCAGCTTTAGCCCGAGGTGTAAGTT
TGAATGCATTTAGACAGTTTGTAATTGCAGTCACTGGTTATACAAAACAAGAAGAAATAGCAGGATTTTTTACTAATACT
GCAGAAGAATTCATGGGAAGTCATTCTATTACTGATTCTCACATCTCAACAATTACAGATACTATATTATTGCTCCAATA
TGTTGAAATAAAAGGAGAGATGGCTAGAGCATTAAATGTTTTTAAAATGCGAGGATCATGGCATGATAAACGAATAAGAG
AATTTATAATCACCAATAAAGGTCCCGAAATCAAAGATTCTTTTTCTAACTTTGAACAGATATTTAGTGGTGCCCCTCAT
AGGGTAGTTCCTGATCAAAATGTTCAGAATATTTTTAGAGGACTAGATAATAATTAG

Upstream 100 bases:

>100_bases
AGAAAAATTTTATAATTAAATATAAATCATATATTTATTTTTAATTTCGTTTCTTTAGCAAAAAACTATGAAAGATAAGA
AATTTGGCAAATCAAATAAA

Downstream 100 bases:

>100_bases
ATGAATTTACTTACTTCAGAGTTTGAAAAATTATCTGTATTGTTAATAGTTTGAGTTAATAATTCATCTTTATCTGATTG
TGCCAATGCTAAATCAAACC

Product: circadian clock protein KaiC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 498; Mature: 498

Protein sequence:

>498_residues
MQVQKLPTGIEGFDDVCRGGLPVSRSTLISGTSGTGKTVFSLQYLHHGICNFDEPGIFVTFEESPLDIIRNAASFGWDLQ
ELIDQNKLFILDASPDPDGQDVAGNFDLSGLIERISYAIRKYKAKRVAIDSITAVFQQYDAIYVVRREIFRLIARLKEIG
VTTVMTTERVDDYGPIARYGVEEFVSDNVVLLRNVLESEKRRRTLEVLKLRGTVHMKGEYPFTMGADGISVFALGAMRLT
QRSSNIRISSGVKDLDDMCGGGYFQDSIILATGATGTGKTMLVSKFVEDAYNNNERAILFAYEESRAQLLRNATSWGIDF
EKMESDGLLKIICAYPESTGLEDHLQIIKTQINQFKPKRMAIDSLSALARGVSLNAFRQFVIAVTGYTKQEEIAGFFTNT
AEEFMGSHSITDSHISTITDTILLLQYVEIKGEMARALNVFKMRGSWHDKRIREFIITNKGPEIKDSFSNFEQIFSGAPH
RVVPDQNVQNIFRGLDNN

Sequences:

>Translated_498_residues
MQVQKLPTGIEGFDDVCRGGLPVSRSTLISGTSGTGKTVFSLQYLHHGICNFDEPGIFVTFEESPLDIIRNAASFGWDLQ
ELIDQNKLFILDASPDPDGQDVAGNFDLSGLIERISYAIRKYKAKRVAIDSITAVFQQYDAIYVVRREIFRLIARLKEIG
VTTVMTTERVDDYGPIARYGVEEFVSDNVVLLRNVLESEKRRRTLEVLKLRGTVHMKGEYPFTMGADGISVFALGAMRLT
QRSSNIRISSGVKDLDDMCGGGYFQDSIILATGATGTGKTMLVSKFVEDAYNNNERAILFAYEESRAQLLRNATSWGIDF
EKMESDGLLKIICAYPESTGLEDHLQIIKTQINQFKPKRMAIDSLSALARGVSLNAFRQFVIAVTGYTKQEEIAGFFTNT
AEEFMGSHSITDSHISTITDTILLLQYVEIKGEMARALNVFKMRGSWHDKRIREFIITNKGPEIKDSFSNFEQIFSGAPH
RVVPDQNVQNIFRGLDNN
>Mature_498_residues
MQVQKLPTGIEGFDDVCRGGLPVSRSTLISGTSGTGKTVFSLQYLHHGICNFDEPGIFVTFEESPLDIIRNAASFGWDLQ
ELIDQNKLFILDASPDPDGQDVAGNFDLSGLIERISYAIRKYKAKRVAIDSITAVFQQYDAIYVVRREIFRLIARLKEIG
VTTVMTTERVDDYGPIARYGVEEFVSDNVVLLRNVLESEKRRRTLEVLKLRGTVHMKGEYPFTMGADGISVFALGAMRLT
QRSSNIRISSGVKDLDDMCGGGYFQDSIILATGATGTGKTMLVSKFVEDAYNNNERAILFAYEESRAQLLRNATSWGIDF
EKMESDGLLKIICAYPESTGLEDHLQIIKTQINQFKPKRMAIDSLSALARGVSLNAFRQFVIAVTGYTKQEEIAGFFTNT
AEEFMGSHSITDSHISTITDTILLLQYVEIKGEMARALNVFKMRGSWHDKRIREFIITNKGPEIKDSFSNFEQIFSGAPH
RVVPDQNVQNIFRGLDNN

Specific function: Core component of the kaiBC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. Binds to DNA. The kaiBC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting

COG id: COG0467

COG function: function code T; RecA-superfamily ATPases implicated in signal transduction

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 kaiC domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014774
- InterPro:   IPR013503
- InterPro:   IPR010624 [H]

Pfam domain/function: PF06745 KaiC [H]

EC number: =2.7.11.1 [H]

Molecular weight: Translated: 55740; Mature: 55740

Theoretical pI: Translated: 5.74; Mature: 5.74

Prosite motif: PS51146 KAIC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVQKLPTGIEGFDDVCRGGLPVSRSTLISGTSGTGKTVFSLQYLHHGICNFDEPGIFVT
CCCCCCCCCCCCHHHHHCCCCCCCCCCEEECCCCCCCHHEEHHHHHCCCCCCCCCCEEEE
FEESPLDIIRNAASFGWDLQELIDQNKLFILDASPDPDGQDVAGNFDLSGLIERISYAIR
ECCCHHHHHHHHHHCCCCHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
KYKAKRVAIDSITAVFQQYDAIYVVRREIFRLIARLKEIGVTTVMTTERVDDYGPIARYG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHCCCCCCHHHHH
VEEFVSDNVVLLRNVLESEKRRRTLEVLKLRGTVHMKGEYPFTMGADGISVFALGAMRLT
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCEEECCCCHHHHHHHHHHHH
QRSSNIRISSGVKDLDDMCGGGYFQDSIILATGATGTGKTMLVSKFVEDAYNNNERAILF
HCCCCEEEECCCHHHHHHCCCCEECCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEE
AYEESRAQLLRNATSWGIDFEKMESDGLLKIICAYPESTGLEDHLQIIKTQINQFKPKRM
EECHHHHHHHHHHHHCCCCHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHH
AIDSLSALARGVSLNAFRQFVIAVTGYTKQEEIAGFFTNTAEEFMGSHSITDSHISTITD
HHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
TILLLQYVEIKGEMARALNVFKMRGSWHDKRIREFIITNKGPEIKDSFSNFEQIFSGAPH
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCC
RVVPDQNVQNIFRGLDNN
CCCCCCCHHHHHHCCCCC
>Mature Secondary Structure
MQVQKLPTGIEGFDDVCRGGLPVSRSTLISGTSGTGKTVFSLQYLHHGICNFDEPGIFVT
CCCCCCCCCCCCHHHHHCCCCCCCCCCEEECCCCCCCHHEEHHHHHCCCCCCCCCCEEEE
FEESPLDIIRNAASFGWDLQELIDQNKLFILDASPDPDGQDVAGNFDLSGLIERISYAIR
ECCCHHHHHHHHHHCCCCHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
KYKAKRVAIDSITAVFQQYDAIYVVRREIFRLIARLKEIGVTTVMTTERVDDYGPIARYG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHCCCCCCHHHHH
VEEFVSDNVVLLRNVLESEKRRRTLEVLKLRGTVHMKGEYPFTMGADGISVFALGAMRLT
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCEEECCCCHHHHHHHHHHHH
QRSSNIRISSGVKDLDDMCGGGYFQDSIILATGATGTGKTMLVSKFVEDAYNNNERAILF
HCCCCEEEECCCHHHHHHCCCCEECCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEE
AYEESRAQLLRNATSWGIDFEKMESDGLLKIICAYPESTGLEDHLQIIKTQINQFKPKRM
EECHHHHHHHHHHHHCCCCHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHH
AIDSLSALARGVSLNAFRQFVIAVTGYTKQEEIAGFFTNTAEEFMGSHSITDSHISTITD
HHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
TILLLQYVEIKGEMARALNVFKMRGSWHDKRIREFIITNKGPEIKDSFSNFEQIFSGAPH
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCC
RVVPDQNVQNIFRGLDNN
CCCCCCCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12917642 [H]