Click here to switch to the map view.

The map label for this gene is capD [H]

Identifier: 78779689

GI number: 78779689

Start: 1213420

End: 1215327

Strand: Direct

Name: capD [H]

Synonym: PMT9312_1306

Alternate gene names: 78779689

Gene position: 1213420-1215327 (Clockwise)

Preceding gene: 78779688

Following gene: 78779692

Centisome position: 70.99

GC content: 29.19

Gene sequence:

>1908_bases
ATGGAATTTTTAAAGAAAATTATAAAAAGACTTAGGTTAGATTCTTTACTTATTCCTAGTATTGATTTTCTTTTAATATA
TTTTGCTTGCCAACTAGGAATACGTTATAGAAATATTTCTTATGAAATTATAAGATCAGATTTAAGAGGCTTCCCCGATG
ATTACGCATGGATATTATGGATTGCACCATTTTTGGGGGTTTTCATATTCTCTTTATCAAACCAATACAAATCATTATTT
GGTTTATTTACAACAAAGAACATATATAAATTATTTTGGTATTCTTTATTTTTTCTAATAATTTTAGCTTTTATTGGACA
AATATTTTTATTTAAAATCCCAGATTTTAAAGCTTGGATTGTATTATATTTCATTGTTGTTTCTGCTACTTCATTTTCAC
GTTTTATATATAAGGATACTTTTCAAAAAAGAATTTCTTTAAAATCTAAAAATGCAAAATCTATTGCCATATATGGAGCT
GGCGGAGCAGGTAGGCAACTTCAGGCCTCCTTGAGAATATCTAACCTATATAACGTCAGTTTCTTTATAGATGACGACTC
AAGTTATTGGTACAGAGAAATCAATGGAATTAAAATATTTCCTCCTGAATGTTTAAAAGATAAAGTAAAAAATATTGATC
AGATTTTTTTAGCAATTCCATCACTTCCTCCAAAAAAAAGAAAGAAAATTCTAAATTCATTACAGAAATTTAATATCAAA
ATCTCTTCCATACCATCAATAAAAGAAATAACAAAGCAGAAATCAATAATAGATTCTTTAAAACCAATTGATGTTGAGGA
TTTACTTGAGAGAGATGCTGTAGATCCTTACATTCATCTACTATCAAAAGACATTAAAGGAGCAATAATTTGCATTACTG
GAGCAGGAGGTTCTATAGGCGGCGAATTAACAAGGCAAATAATCGAATTAAATCCAAAGAAAATAATCTTGCTGGACAAT
TGTGAATCAAATCTTTACCAAATAACATCAGCGGTTGAAGGCTTGAATTTTCGTAGCATAAAAATAACACCGGCCTTAGG
CGATTGTTGTAATTTAGAATTTCTAAAGAACCTATTCAGAAAAGAAAAAGTTGATATTGTTTTTCATGCAGCAGCATATA
AGCATGTTCCATTGGTAGAAATAAATCCCATAAATAGTATAAATAATAATGTTTTTTCTACCCTCAATATATGTATTGCC
TCAAAGAAACTTTCTTTAAAAAAGGTTTTGATGATCTCATCAGATAAAGCTGTAAGACCTACAAATATAATGGGCGCATC
TAAAAGACTTTCTGAAATTATTGTTCAAGCATTTGCTCATGATGCTGAAAAAAATTCGCTTAATAAAAAAGAAAAAAAAA
CATGCTTCTCCATGGTTAGATTTGGAAATGTTCTTAGTTCATCAGGATCAGCAGTTCCACTTTTTATTAAGCAAATTTCC
TCTGGGGGTCCAGTAACTCTTACTCATCCTCAAATAACGCGTTACTTTATGACGATTAAGGAAGCCTCACAATTAGTTAT
TCAATCTTCAGCCATGGCTCAAGGAGGAGAGGTATTCCTATTAGATATGGGTAAATCTATATGTATAAAAGATCTTGTTA
TTAAATTAATTAAATTGAGTGGACTACAATTGAGAGATGATTCAAATCCTAATGGCGATATAGAAATTAAGATTACTGGA
TTGAGACCTGGTGAAAAATTATATGAAGAATTACTAATTGATGCTCAGGCAGAAAAGACAGACCATCCTTTAATATTTAG
AGCGAAAGAAAAATTTATTCCAATGGATGAAATTATCCCAAAATTAGAAAATTTAAAAAAATTGATTAACGAAAGAAATA
AAGATCAAATTTTAAAAACCCTGAATGAATTAGTTAAAGAATGGCAAAATCAAAATGAATTAAACTAG

Upstream 100 bases:

>100_bases
AAAGATTTATGTAAGTTATCACTTAGAAAAGATAAACTTAAACCTACACCTCCTCCAGGTTCTAATGAAATCGTTGTTAC
AAGAGAAACCTGAATAATTA

Downstream 100 bases:

>100_bases
ATCCATCAGCTTACCCATTTTCTTCATTTCATTACTAATATCATTTCTTTCTAATATTGTTTCTCTAGCCCTAATTCCAA
TTTTTTTCCATAAATGTTTT

Product: nucleotide-diphosphate-sugar epimerase, membrane associated

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 635; Mature: 635

Protein sequence:

>635_residues
MEFLKKIIKRLRLDSLLIPSIDFLLIYFACQLGIRYRNISYEIIRSDLRGFPDDYAWILWIAPFLGVFIFSLSNQYKSLF
GLFTTKNIYKLFWYSLFFLIILAFIGQIFLFKIPDFKAWIVLYFIVVSATSFSRFIYKDTFQKRISLKSKNAKSIAIYGA
GGAGRQLQASLRISNLYNVSFFIDDDSSYWYREINGIKIFPPECLKDKVKNIDQIFLAIPSLPPKKRKKILNSLQKFNIK
ISSIPSIKEITKQKSIIDSLKPIDVEDLLERDAVDPYIHLLSKDIKGAIICITGAGGSIGGELTRQIIELNPKKIILLDN
CESNLYQITSAVEGLNFRSIKITPALGDCCNLEFLKNLFRKEKVDIVFHAAAYKHVPLVEINPINSINNNVFSTLNICIA
SKKLSLKKVLMISSDKAVRPTNIMGASKRLSEIIVQAFAHDAEKNSLNKKEKKTCFSMVRFGNVLSSSGSAVPLFIKQIS
SGGPVTLTHPQITRYFMTIKEASQLVIQSSAMAQGGEVFLLDMGKSICIKDLVIKLIKLSGLQLRDDSNPNGDIEIKITG
LRPGEKLYEELLIDAQAEKTDHPLIFRAKEKFIPMDEIIPKLENLKKLINERNKDQILKTLNELVKEWQNQNELN

Sequences:

>Translated_635_residues
MEFLKKIIKRLRLDSLLIPSIDFLLIYFACQLGIRYRNISYEIIRSDLRGFPDDYAWILWIAPFLGVFIFSLSNQYKSLF
GLFTTKNIYKLFWYSLFFLIILAFIGQIFLFKIPDFKAWIVLYFIVVSATSFSRFIYKDTFQKRISLKSKNAKSIAIYGA
GGAGRQLQASLRISNLYNVSFFIDDDSSYWYREINGIKIFPPECLKDKVKNIDQIFLAIPSLPPKKRKKILNSLQKFNIK
ISSIPSIKEITKQKSIIDSLKPIDVEDLLERDAVDPYIHLLSKDIKGAIICITGAGGSIGGELTRQIIELNPKKIILLDN
CESNLYQITSAVEGLNFRSIKITPALGDCCNLEFLKNLFRKEKVDIVFHAAAYKHVPLVEINPINSINNNVFSTLNICIA
SKKLSLKKVLMISSDKAVRPTNIMGASKRLSEIIVQAFAHDAEKNSLNKKEKKTCFSMVRFGNVLSSSGSAVPLFIKQIS
SGGPVTLTHPQITRYFMTIKEASQLVIQSSAMAQGGEVFLLDMGKSICIKDLVIKLIKLSGLQLRDDSNPNGDIEIKITG
LRPGEKLYEELLIDAQAEKTDHPLIFRAKEKFIPMDEIIPKLENLKKLINERNKDQILKTLNELVKEWQNQNELN
>Mature_635_residues
MEFLKKIIKRLRLDSLLIPSIDFLLIYFACQLGIRYRNISYEIIRSDLRGFPDDYAWILWIAPFLGVFIFSLSNQYKSLF
GLFTTKNIYKLFWYSLFFLIILAFIGQIFLFKIPDFKAWIVLYFIVVSATSFSRFIYKDTFQKRISLKSKNAKSIAIYGA
GGAGRQLQASLRISNLYNVSFFIDDDSSYWYREINGIKIFPPECLKDKVKNIDQIFLAIPSLPPKKRKKILNSLQKFNIK
ISSIPSIKEITKQKSIIDSLKPIDVEDLLERDAVDPYIHLLSKDIKGAIICITGAGGSIGGELTRQIIELNPKKIILLDN
CESNLYQITSAVEGLNFRSIKITPALGDCCNLEFLKNLFRKEKVDIVFHAAAYKHVPLVEINPINSINNNVFSTLNICIA
SKKLSLKKVLMISSDKAVRPTNIMGASKRLSEIIVQAFAHDAEKNSLNKKEKKTCFSMVRFGNVLSSSGSAVPLFIKQIS
SGGPVTLTHPQITRYFMTIKEASQLVIQSSAMAQGGEVFLLDMGKSICIKDLVIKLIKLSGLQLRDDSNPNGDIEIKITG
LRPGEKLYEELLIDAQAEKTDHPLIFRAKEKFIPMDEIIPKLENLKKLINERNKDQILKTLNELVKEWQNQNELN

Specific function: Required for the biosynthesis of type 1 capsular polysaccharide [H]

COG id: COG1086

COG function: function code MG; Predicted nucleoside-diphosphate sugar epimerases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR003869 [H]

Pfam domain/function: PF02719 Polysacc_synt_2 [H]

EC number: NA

Molecular weight: Translated: 72182; Mature: 72182

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFLKKIIKRLRLDSLLIPSIDFLLIYFACQLGIRYRNISYEIIRSDLRGFPDDYAWILW
CHHHHHHHHHHHHCHHHCCHHHHHHHHHHHHHCCEEECCHHHHHHHHHCCCCCCHHHHHH
IAPFLGVFIFSLSNQYKSLFGLFTTKNIYKLFWYSLFFLIILAFIGQIFLFKIPDFKAWI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHH
VLYFIVVSATSFSRFIYKDTFQKRISLKSKNAKSIAIYGAGGAGRQLQASLRISNLYNVS
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCEEEEEEEEEEEEEE
FFIDDDSSYWYREINGIKIFPPECLKDKVKNIDQIFLAIPSLPPKKRKKILNSLQKFNIK
EEEECCCCEEEEECCCEEECCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCEE
ISSIPSIKEITKQKSIIDSLKPIDVEDLLERDAVDPYIHLLSKDIKGAIICITGAGGSIG
EECCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHCCCCEEEEEECCCCCCC
GELTRQIIELNPKKIILLDNCESNLYQITSAVEGLNFRSIKITPALGDCCNLEFLKNLFR
HHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHH
KEKVDIVFHAAAYKHVPLVEINPINSINNNVFSTLNICIASKKLSLKKVLMISSDKAVRP
HCCCCEEEEEHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCHHHEEEECCCCCCCC
TNIMGASKRLSEIIVQAFAHDAEKNSLNKKEKKTCFSMVRFGNVLSSSGSAVPLFIKQIS
CCCCCHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHC
SGGPVTLTHPQITRYFMTIKEASQLVIQSSAMAQGGEVFLLDMGKSICIKDLVIKLIKLS
CCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHC
GLQLRDDSNPNGDIEIKITGLRPGEKLYEELLIDAQAEKTDHPLIFRAKEKFIPMDEIIP
CCEEECCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCCCCCEEEECHHHCCCHHHHHH
KLENLKKLINERNKDQILKTLNELVKEWQNQNELN
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MEFLKKIIKRLRLDSLLIPSIDFLLIYFACQLGIRYRNISYEIIRSDLRGFPDDYAWILW
CHHHHHHHHHHHHCHHHCCHHHHHHHHHHHHHCCEEECCHHHHHHHHHCCCCCCHHHHHH
IAPFLGVFIFSLSNQYKSLFGLFTTKNIYKLFWYSLFFLIILAFIGQIFLFKIPDFKAWI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHH
VLYFIVVSATSFSRFIYKDTFQKRISLKSKNAKSIAIYGAGGAGRQLQASLRISNLYNVS
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCEEEEEEEEEEEEEE
FFIDDDSSYWYREINGIKIFPPECLKDKVKNIDQIFLAIPSLPPKKRKKILNSLQKFNIK
EEEECCCCEEEEECCCEEECCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCEE
ISSIPSIKEITKQKSIIDSLKPIDVEDLLERDAVDPYIHLLSKDIKGAIICITGAGGSIG
EECCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHCCCCEEEEEECCCCCCC
GELTRQIIELNPKKIILLDNCESNLYQITSAVEGLNFRSIKITPALGDCCNLEFLKNLFR
HHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHH
KEKVDIVFHAAAYKHVPLVEINPINSINNNVFSTLNICIASKKLSLKKVLMISSDKAVRP
HCCCCEEEEEHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCHHHEEEECCCCCCCC
TNIMGASKRLSEIIVQAFAHDAEKNSLNKKEKKTCFSMVRFGNVLSSSGSAVPLFIKQIS
CCCCCHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHC
SGGPVTLTHPQITRYFMTIKEASQLVIQSSAMAQGGEVFLLDMGKSICIKDLVIKLIKLS
CCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHC
GLQLRDDSNPNGDIEIKITGLRPGEKLYEELLIDAQAEKTDHPLIFRAKEKFIPMDEIIP
CCEEECCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCCCCCEEEECHHHCCCHHHHHH
KLENLKKLINERNKDQILKTLNELVKEWQNQNELN
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7961465 [H]