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The map label for this gene is psbD [H]

Identifier: 78779639

GI number: 78779639

Start: 1167825

End: 1168901

Strand: Direct

Name: psbD [H]

Synonym: PMT9312_1256

Alternate gene names: 78779639

Gene position: 1167825-1168901 (Clockwise)

Preceding gene: 78779636

Following gene: 78779640

Centisome position: 68.33

GC content: 40.85

Gene sequence:

>1077_bases
ATGACGATCGCAGTTGGTAGCGCCCCACAAAGAGGATGGTTTGATGTCCTCGATGATTGGTTGAAGCGCGACCGCTTTGT
ATTTATTGGTTGGTCCGGACTACTACTTCTTCCTTGTGCATATCTTGCTATAGGTGGTTGGTTCGTCGGAACAACATTTG
TTACCTCATGGTACACACATGGAGTTGCAAGCTCATACCTTGAAGGTTGTAACTTTTTAACAGCAGCTGTTAGTACCCCT
GGTGATGCCATGGGACACAGTCTTCTATTTTTATGGGGTCCTGAAGCCCAAGGTAGTTTCGTTAGATGGCTACAACTTGG
TGGTCTTTGGAACTTTGTCGCATTACATGGAGTATTTGGCCTTATTGGTTTTATGCTTCGTCAGTTTGAAATTGCTGGCC
TTGTTGGAATAAGACCATACAACGCATTAGCTTTCTCAGCAGTAATTGCAGTTTTCACAAGTATTTTCCTTATTTATCCC
TTAGGACAGCATAGTTGGTTCTTCGCACCTTCATTTGGTGTTGCAGCAATCTTCCGTTATATTCTGTTCATTCAAGGTTT
TCATAATATTACTTTAAATCCCTTCCACATGATGGGAGTAGCTGGAATTCTTGGTGGTGCTCTACTTTGCGCTATTCATG
GAGCTACAGTACAAAATACTTTGTATGAAGATACAAGTATTTACACAGATGGTAAGGTTCAAAGTTCAACATTTAGAGCT
TTTGACCCTACACAAGAAGAAGAAACTTATTCAATGATTACGGCGAATAGATTCTGGAGTCAAATCTTCGGTATCGCTTT
CTCAAACAAGCGTTTCTTACACTTCTTGATGCTTTTTGTACCTGTTATGGGTATGTGGACATCTTCAATTGGTATAGTCG
GCTTAGCACTAAACCTAAGGGCTTATGATTTCGTAAGCCAAGAGATACGTGCTGCAGAAGATCCTGAATTTGAAACTTTC
TATACAAAAAATATACTTTTGAACGAAGGTATGCGAGCATGGATGTCTTCTGTGGATCAACCACACGAAAATTTTGTATT
CCCTGAGGAGGTTCTTCCACGTGGAAACGCCCTTTAA

Upstream 100 bases:

>100_bases
GAAAACCTTTACAAGGCATTTCAGATATACAAATATTTCCCCACATTACTCTCAATCTTTGTTACAGTTTCTCCGTATCC
CGAAGCTAAAACGATTTCTC

Downstream 100 bases:

>100_bases
TAATTTATTAAGAGCTCCAAACCAAAGTATTGAAGAGACTGGTTATGCCTGGTATGTAGGTAACGCTAGACTAATCAATT
TATCTGGACGTTTATTAGGA

Product: photosystem II D2 protein (photosystem q(a) protein)

Products: NA

Alternate protein names: PSII D2 protein; Photosystem Q(A) protein [H]

Number of amino acids: Translated: 358; Mature: 357

Protein sequence:

>358_residues
MTIAVGSAPQRGWFDVLDDWLKRDRFVFIGWSGLLLLPCAYLAIGGWFVGTTFVTSWYTHGVASSYLEGCNFLTAAVSTP
GDAMGHSLLFLWGPEAQGSFVRWLQLGGLWNFVALHGVFGLIGFMLRQFEIAGLVGIRPYNALAFSAVIAVFTSIFLIYP
LGQHSWFFAPSFGVAAIFRYILFIQGFHNITLNPFHMMGVAGILGGALLCAIHGATVQNTLYEDTSIYTDGKVQSSTFRA
FDPTQEEETYSMITANRFWSQIFGIAFSNKRFLHFLMLFVPVMGMWTSSIGIVGLALNLRAYDFVSQEIRAAEDPEFETF
YTKNILLNEGMRAWMSSVDQPHENFVFPEEVLPRGNAL

Sequences:

>Translated_358_residues
MTIAVGSAPQRGWFDVLDDWLKRDRFVFIGWSGLLLLPCAYLAIGGWFVGTTFVTSWYTHGVASSYLEGCNFLTAAVSTP
GDAMGHSLLFLWGPEAQGSFVRWLQLGGLWNFVALHGVFGLIGFMLRQFEIAGLVGIRPYNALAFSAVIAVFTSIFLIYP
LGQHSWFFAPSFGVAAIFRYILFIQGFHNITLNPFHMMGVAGILGGALLCAIHGATVQNTLYEDTSIYTDGKVQSSTFRA
FDPTQEEETYSMITANRFWSQIFGIAFSNKRFLHFLMLFVPVMGMWTSSIGIVGLALNLRAYDFVSQEIRAAEDPEFETF
YTKNILLNEGMRAWMSSVDQPHENFVFPEEVLPRGNAL
>Mature_357_residues
TIAVGSAPQRGWFDVLDDWLKRDRFVFIGWSGLLLLPCAYLAIGGWFVGTTFVTSWYTHGVASSYLEGCNFLTAAVSTPG
DAMGHSLLFLWGPEAQGSFVRWLQLGGLWNFVALHGVFGLIGFMLRQFEIAGLVGIRPYNALAFSAVIAVFTSIFLIYPL
GQHSWFFAPSFGVAAIFRYILFIQGFHNITLNPFHMMGVAGILGGALLCAIHGATVQNTLYEDTSIYTDGKVQSSTFRAF
DPTQEEETYSMITANRFWSQIFGIAFSNKRFLHFLMLFVPVMGMWTSSIGIVGLALNLRAYDFVSQEIRAAEDPEFETFY
TKNILLNEGMRAWMSSVDQPHENFVFPEEVLPRGNAL

Specific function: One of the two reaction center proteins of photosystem II (PSII), D2 is needed for assembly of a stable PSII complex [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the reaction center pufL/M/psbA/D family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000484
- InterPro:   IPR005868 [H]

Pfam domain/function: PF00124 Photo_RC [H]

EC number: NA

Molecular weight: Translated: 39976; Mature: 39844

Theoretical pI: Translated: 5.78; Mature: 5.78

Prosite motif: PS00244 REACTION_CENTER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIAVGSAPQRGWFDVLDDWLKRDRFVFIGWSGLLLLPCAYLAIGGWFVGTTFVTSWYTH
CEEECCCCCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVASSYLEGCNFLTAAVSTPGDAMGHSLLFLWGPEAQGSFVRWLQLGGLWNFVALHGVFG
HHHHHHHHCCHHHEEECCCCCCCCCCEEEEEECCCCCCHHHHHHHHCCHHHHHHHHHHHH
LIGFMLRQFEIAGLVGIRPYNALAFSAVIAVFTSIFLIYPLGQHSWFFAPSFGVAAIFRY
HHHHHHHHHHHHCEEECCCHHHHHHHHHHHHHHHHHHHEECCCCCEEECCCCCHHHHHHH
ILFIQGFHNITLNPFHMMGVAGILGGALLCAIHGATVQNTLYEDTSIYTDGKVQSSTFRA
HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCEEECCCCCCCCCCC
FDPTQEEETYSMITANRFWSQIFGIAFSNKRFLHFLMLFVPVMGMWTSSIGIVGLALNLR
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHH
AYDFVSQEIRAAEDPEFETFYTKNILLNEGMRAWMSSVDQPHENFVFPEEVLPRGNAL
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCHHHCCCCCCC
>Mature Secondary Structure 
TIAVGSAPQRGWFDVLDDWLKRDRFVFIGWSGLLLLPCAYLAIGGWFVGTTFVTSWYTH
EEECCCCCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVASSYLEGCNFLTAAVSTPGDAMGHSLLFLWGPEAQGSFVRWLQLGGLWNFVALHGVFG
HHHHHHHHCCHHHEEECCCCCCCCCCEEEEEECCCCCCHHHHHHHHCCHHHHHHHHHHHH
LIGFMLRQFEIAGLVGIRPYNALAFSAVIAVFTSIFLIYPLGQHSWFFAPSFGVAAIFRY
HHHHHHHHHHHHCEEECCCHHHHHHHHHHHHHHHHHHHEECCCCCEEECCCCCHHHHHHH
ILFIQGFHNITLNPFHMMGVAGILGGALLCAIHGATVQNTLYEDTSIYTDGKVQSSTFRA
HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCEEECCCCCCCCCCC
FDPTQEEETYSMITANRFWSQIFGIAFSNKRFLHFLMLFVPVMGMWTSSIGIVGLALNLR
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHH
AYDFVSQEIRAAEDPEFETFYTKNILLNEGMRAWMSSVDQPHENFVFPEEVLPRGNAL
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12917642 [H]