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The map label for this gene is yocR [H]

Identifier: 78779606

GI number: 78779606

Start: 1139766

End: 1141115

Strand: Direct

Name: yocR [H]

Synonym: PMT9312_1223

Alternate gene names: 78779606

Gene position: 1139766-1141115 (Clockwise)

Preceding gene: 78779597

Following gene: 78779607

Centisome position: 66.68

GC content: 36.22

Gene sequence:

>1350_bases
TTGGTTTTGGACTCAAAGATTTCTCAAAGAGAACAATGGACTAGTAAGCTAGGATTCATTCTCGCAGCTGCTGGAAGTGC
AGTAGGTCTAGGCAACCTTTGGGGTTTTGCTTACAGAGCATCTCAAGGAGGAGGTGCTGCTTTTGTACTTTTATATTTAT
TGATCGTTTTAATTGTATGTCTTCCGGTATTTGTTGCTGAAATGGCATTGGGTAGAAACGCAATGGCAAGCACATTACTT
GCTCCTGTTAAGCTGGCTGGGAAAAATTGGTATCCATTAGGAATTCTTTTCTTCTTAGCTCCCCTGGGAATAGCATCATA
TTATTCAGTGATAATGGGATGGACAGCAGATACCTTGTTCCATTCTTTATTTTTTGGATTACCGAAAAATTTAACTGAAG
CAGAAACCTTCTTTGGCTCTATTAGTAGTGGTAGCAGTGTTTTATTAGGGCACCTATTAAGTCTTGTACTTACAGCAATA
ATAGTTTCATCAGGTATAAAAAAAGGTATAGAAAAAGTTACTAGATATTTCATGCCAATCCTTTTCATAATTATTGTAAT
TCTTGCTATTTGGGCTACTTCTCTTTCAGGGGCTTGGGAAGGATATAAAACATTTCTACTTAAGTTTGATTTTAATGAAT
TAAGAAATCCTCAAACAATAAGAAACGCTTTTACACAAGCATTCTTTTCATTAAGCTTAGGGATTGGAATTATGGTTACT
TACGCCTCGTATCTAAATAAGAAAAGTAATCTTCCAAAACTAAGTGTTGGAGTTGCATCATTAGATACTTTGGTTGGACT
AATGGCTGGATTTATAACTTTCCCAATAGTTTTAACATTCGGTTTAAGTGACGCTATTTCTGAATCCACAGTTGGTGCTT
TGTTCATATCAATTCCAACAGGCCTAGGTTCATATGGTGCAGCCGGAAGAATTGTAGCTGTTGCATTTTTTGCACTAGCT
TATATTGCAGCTATAACTTCTTCTGTTTCATTATTAGAAGTTCCAGTTTCCTCTTTAATGGATAAATTTGGTTTTAAAAG
AGAAAAATCTGTTTGGATGATAACTCTATTCCTATTCTTAGCTGGGATTCCTTCTGCATTGAACTTAAACATTCTTGGAA
CAGTTGATTCGATTTTTGGAGGCGTATTACTTATCTTTGGTGGATTCTTAGTAACTTTCTTTATGGGATGGGTCGTTCCA
GGAAAGTTCGATGAAGAGCTTAGTGACTCAAAAGTTGGAATCAAAACAACCCGTTATTTGAAATTCATGACAAGGTGGGT
TGCGCCTCCAATTATTGGTTTTGGACTATTTATTAGTGTGTTTGACTTGCTGAAAGGCTGGGTAAGTTAG

Upstream 100 bases:

>100_bases
AATCTTTTTCAATAAAAAATATCAAGAAAAATTAGTTTTCATTAAGCAAAGTATTAACTAATTTTTATTTATAAGTTATA
AATCAACTATAAAAACGATT

Downstream 100 bases:

>100_bases
AAACTTTTTTTAGATTATTTTAAAACAATCTAAAAAAAATCTTCAATGTATAAGTATTTGCAGTTGTTCTTGCTTAAAAA
TTAATATATTGGAGAAGTTC

Product: SNF family Na(+)-dependent transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 449; Mature: 449

Protein sequence:

>449_residues
MVLDSKISQREQWTSKLGFILAAAGSAVGLGNLWGFAYRASQGGGAAFVLLYLLIVLIVCLPVFVAEMALGRNAMASTLL
APVKLAGKNWYPLGILFFLAPLGIASYYSVIMGWTADTLFHSLFFGLPKNLTEAETFFGSISSGSSVLLGHLLSLVLTAI
IVSSGIKKGIEKVTRYFMPILFIIIVILAIWATSLSGAWEGYKTFLLKFDFNELRNPQTIRNAFTQAFFSLSLGIGIMVT
YASYLNKKSNLPKLSVGVASLDTLVGLMAGFITFPIVLTFGLSDAISESTVGALFISIPTGLGSYGAAGRIVAVAFFALA
YIAAITSSVSLLEVPVSSLMDKFGFKREKSVWMITLFLFLAGIPSALNLNILGTVDSIFGGVLLIFGGFLVTFFMGWVVP
GKFDEELSDSKVGIKTTRYLKFMTRWVAPPIIGFGLFISVFDLLKGWVS

Sequences:

>Translated_449_residues
MVLDSKISQREQWTSKLGFILAAAGSAVGLGNLWGFAYRASQGGGAAFVLLYLLIVLIVCLPVFVAEMALGRNAMASTLL
APVKLAGKNWYPLGILFFLAPLGIASYYSVIMGWTADTLFHSLFFGLPKNLTEAETFFGSISSGSSVLLGHLLSLVLTAI
IVSSGIKKGIEKVTRYFMPILFIIIVILAIWATSLSGAWEGYKTFLLKFDFNELRNPQTIRNAFTQAFFSLSLGIGIMVT
YASYLNKKSNLPKLSVGVASLDTLVGLMAGFITFPIVLTFGLSDAISESTVGALFISIPTGLGSYGAAGRIVAVAFFALA
YIAAITSSVSLLEVPVSSLMDKFGFKREKSVWMITLFLFLAGIPSALNLNILGTVDSIFGGVLLIFGGFLVTFFMGWVVP
GKFDEELSDSKVGIKTTRYLKFMTRWVAPPIIGFGLFISVFDLLKGWVS
>Mature_449_residues
MVLDSKISQREQWTSKLGFILAAAGSAVGLGNLWGFAYRASQGGGAAFVLLYLLIVLIVCLPVFVAEMALGRNAMASTLL
APVKLAGKNWYPLGILFFLAPLGIASYYSVIMGWTADTLFHSLFFGLPKNLTEAETFFGSISSGSSVLLGHLLSLVLTAI
IVSSGIKKGIEKVTRYFMPILFIIIVILAIWATSLSGAWEGYKTFLLKFDFNELRNPQTIRNAFTQAFFSLSLGIGIMVT
YASYLNKKSNLPKLSVGVASLDTLVGLMAGFITFPIVLTFGLSDAISESTVGALFISIPTGLGSYGAAGRIVAVAFFALA
YIAAITSSVSLLEVPVSSLMDKFGFKREKSVWMITLFLFLAGIPSALNLNILGTVDSIFGGVLLIFGGFLVTFFMGWVVP
GKFDEELSDSKVGIKTTRYLKFMTRWVAPPIIGFGLFISVFDLLKGWVS

Specific function: Putative sodium-dependent transporter [H]

COG id: COG0733

COG function: function code R; Na+-dependent transporters of the SNF family

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family [H]

Homologues:

Organism=Homo sapiens, GI289191351, Length=504, Percent_Identity=23.8095238095238, Blast_Score=113, Evalue=4e-25,
Organism=Homo sapiens, GI4557046, Length=504, Percent_Identity=23.8095238095238, Blast_Score=113, Evalue=4e-25,
Organism=Homo sapiens, GI289191377, Length=504, Percent_Identity=23.8095238095238, Blast_Score=112, Evalue=5e-25,
Organism=Homo sapiens, GI171184408, Length=396, Percent_Identity=27.7777777777778, Blast_Score=111, Evalue=1e-24,
Organism=Homo sapiens, GI171184406, Length=396, Percent_Identity=27.7777777777778, Blast_Score=111, Evalue=1e-24,
Organism=Homo sapiens, GI171184404, Length=396, Percent_Identity=27.7777777777778, Blast_Score=111, Evalue=1e-24,
Organism=Homo sapiens, GI4507041, Length=494, Percent_Identity=23.6842105263158, Blast_Score=105, Evalue=8e-23,
Organism=Homo sapiens, GI4507043, Length=417, Percent_Identity=25.4196642685851, Blast_Score=102, Evalue=6e-22,
Organism=Homo sapiens, GI21361581, Length=414, Percent_Identity=25.1207729468599, Blast_Score=101, Evalue=2e-21,
Organism=Homo sapiens, GI58219014, Length=284, Percent_Identity=30.6338028169014, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI188528618, Length=382, Percent_Identity=24.869109947644, Blast_Score=97, Evalue=3e-20,
Organism=Homo sapiens, GI7657587, Length=497, Percent_Identity=23.943661971831, Blast_Score=96, Evalue=7e-20,
Organism=Homo sapiens, GI33354281, Length=306, Percent_Identity=26.1437908496732, Blast_Score=96, Evalue=7e-20,
Organism=Homo sapiens, GI134304856, Length=414, Percent_Identity=26.0869565217391, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI11181770, Length=300, Percent_Identity=27.6666666666667, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI197276623, Length=509, Percent_Identity=24.75442043222, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI54607094, Length=509, Percent_Identity=24.75442043222, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI194018524, Length=305, Percent_Identity=28.5245901639344, Blast_Score=93, Evalue=4e-19,
Organism=Homo sapiens, GI51468073, Length=306, Percent_Identity=26.1437908496732, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI5032097, Length=500, Percent_Identity=23, Blast_Score=86, Evalue=1e-16,
Organism=Homo sapiens, GI12408638, Length=277, Percent_Identity=27.0758122743682, Blast_Score=85, Evalue=2e-16,
Organism=Homo sapiens, GI92859670, Length=205, Percent_Identity=33.6585365853659, Blast_Score=77, Evalue=5e-14,
Organism=Homo sapiens, GI218563756, Length=500, Percent_Identity=22.8, Blast_Score=75, Evalue=9e-14,
Organism=Homo sapiens, GI21361693, Length=113, Percent_Identity=34.5132743362832, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI197276625, Length=134, Percent_Identity=34.3283582089552, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI289191353, Length=438, Percent_Identity=21.689497716895, Blast_Score=70, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17555248, Length=422, Percent_Identity=24.1706161137441, Blast_Score=108, Evalue=4e-24,
Organism=Caenorhabditis elegans, GI25146584, Length=419, Percent_Identity=25.0596658711217, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17554804, Length=363, Percent_Identity=26.7217630853994, Blast_Score=86, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17569475, Length=409, Percent_Identity=25.1833740831296, Blast_Score=76, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI133952791, Length=127, Percent_Identity=32.2834645669291, Blast_Score=67, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI212642127, Length=308, Percent_Identity=25.6493506493506, Blast_Score=65, Evalue=9e-11,
Organism=Drosophila melanogaster, GI45551088, Length=386, Percent_Identity=25.9067357512953, Blast_Score=119, Evalue=4e-27,
Organism=Drosophila melanogaster, GI24652942, Length=386, Percent_Identity=25.9067357512953, Blast_Score=119, Evalue=5e-27,
Organism=Drosophila melanogaster, GI24661428, Length=492, Percent_Identity=25.8130081300813, Blast_Score=118, Evalue=9e-27,
Organism=Drosophila melanogaster, GI281363702, Length=472, Percent_Identity=26.6949152542373, Blast_Score=117, Evalue=2e-26,
Organism=Drosophila melanogaster, GI17136952, Length=395, Percent_Identity=27.0886075949367, Blast_Score=116, Evalue=3e-26,
Organism=Drosophila melanogaster, GI281364394, Length=395, Percent_Identity=27.0886075949367, Blast_Score=113, Evalue=3e-25,
Organism=Drosophila melanogaster, GI28574704, Length=395, Percent_Identity=27.0886075949367, Blast_Score=113, Evalue=3e-25,
Organism=Drosophila melanogaster, GI17136950, Length=395, Percent_Identity=27.0886075949367, Blast_Score=113, Evalue=3e-25,
Organism=Drosophila melanogaster, GI28574702, Length=395, Percent_Identity=27.0886075949367, Blast_Score=113, Evalue=3e-25,
Organism=Drosophila melanogaster, GI19921936, Length=396, Percent_Identity=24.7474747474747, Blast_Score=110, Evalue=1e-24,
Organism=Drosophila melanogaster, GI24582567, Length=418, Percent_Identity=27.0334928229665, Blast_Score=110, Evalue=1e-24,
Organism=Drosophila melanogaster, GI24762620, Length=427, Percent_Identity=26.9320843091335, Blast_Score=110, Evalue=2e-24,
Organism=Drosophila melanogaster, GI281365034, Length=412, Percent_Identity=24.0291262135922, Blast_Score=102, Evalue=4e-22,
Organism=Drosophila melanogaster, GI281363700, Length=338, Percent_Identity=28.9940828402367, Blast_Score=99, Evalue=4e-21,
Organism=Drosophila melanogaster, GI45550877, Length=335, Percent_Identity=26.5671641791045, Blast_Score=96, Evalue=6e-20,
Organism=Drosophila melanogaster, GI45551183, Length=335, Percent_Identity=26.2686567164179, Blast_Score=95, Evalue=8e-20,
Organism=Drosophila melanogaster, GI24639853, Length=427, Percent_Identity=24.1217798594848, Blast_Score=90, Evalue=3e-18,
Organism=Drosophila melanogaster, GI281364136, Length=430, Percent_Identity=24.1860465116279, Blast_Score=84, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24655079, Length=301, Percent_Identity=25.9136212624585, Blast_Score=83, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24639514, Length=394, Percent_Identity=25.8883248730964, Blast_Score=83, Evalue=4e-16,
Organism=Drosophila melanogaster, GI24639516, Length=301, Percent_Identity=26.9102990033223, Blast_Score=83, Evalue=4e-16,
Organism=Drosophila melanogaster, GI221329674, Length=394, Percent_Identity=25.8883248730964, Blast_Score=83, Evalue=5e-16,
Organism=Drosophila melanogaster, GI19921352, Length=208, Percent_Identity=25.9615384615385, Blast_Score=72, Evalue=7e-13,
Organism=Drosophila melanogaster, GI24584353, Length=208, Percent_Identity=25.9615384615385, Blast_Score=72, Evalue=7e-13,
Organism=Drosophila melanogaster, GI24654186, Length=306, Percent_Identity=25.1633986928105, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24582569, Length=372, Percent_Identity=25.5376344086022, Blast_Score=70, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000175 [H]

Pfam domain/function: PF00209 SNF [H]

EC number: NA

Molecular weight: Translated: 48426; Mature: 48426

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: PS50267 NA_NEUROTRAN_SYMP_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure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HHHHHHHCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]