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The map label for this gene is ydiU [C]

Identifier: 78779607

GI number: 78779607

Start: 1141418

End: 1143121

Strand: Direct

Name: ydiU [C]

Synonym: PMT9312_1224

Alternate gene names: 78779607

Gene position: 1141418-1143121 (Clockwise)

Preceding gene: 78779606

Following gene: 78779610

Centisome position: 66.78

GC content: 35.97

Gene sequence:

>1704_bases
ATGTCAACCAAATCTGATTCATTAAAAGGAAAGCTTACAGAAAATTTTTCTGAATTTTCTCAATTATCTGACTATTCTCT
TATGAATTCTCTTAAAGCAGATCCTCAATCAACAAAAGATGGAAATGATCATAAGCCGCGTTCAGTATATTCAGGTCATT
ATGTACCAGTTGTTCCAACTCCTATTCCAGAACCAGAATATATTTCCCATAGCAACAAACTTTTTAAAGAACTAAGGCTA
AGCTCAGATCTTACTAAAGACGAGAATTTTTGTCGTTTTTTCTCAGGTGATATTTCTGTTGCTAATTATCCAATGAGTCC
TGTTGGTTGGGCAACAGGTTATGCATTATCAATTTACGGAACTGAATATACCCAACAATGTCCCTTTGGCACTGGCAATG
GTTATGGCGATGGCAGAGCAATTTCTGTTTTTGAAGGTTTATTCAATGGGAAAAGAATGGAAATGCAACTTAAAGGAGGA
GGTCCAACTCCCTACTGTCGTGGAGCAGATGGCAGAGCTGTCTTAAGGTCTAGCGTACGAGAATTTCTCGCACAGGAATT
AATGGATGCCTTGGGAATCCCTACCTCAAGATCTTTAACACTTTATGTCTCACGTTCAGAAATAGTTAGAAGACCGTGGT
ATTCCAAAGGGTCCAGATATTTTGAACCTGATGTCATGATTGATAATCAAGCGGCAATTACTACGAGAGTCGCTCCATCT
TTTTTACGTTTAGGCCAGATTGAACTTTTTGCAAGACGAGTTCGTAATAATGCGCATGATGAGGCCCTCAATGAACTAAA
GATGATAGTTCAACATCTAATTGATAGAAATTATAAAGATGAAATTGAATATGAGATTTCAATTGAAAGTAAAGTAATAA
AACTGGCTTCTTTATACAGATCAAGACTTATATCACTTATAGCCAACTGGATGAGAGTTGGTTATTGCCAGGGTAATTTC
AATAGTGATAATTGTGCTGCTGGAGGTTATACCTTGGATTATGGCCCCTTTGGATTCTGTGAATTATTTGATCCAAGATT
TCAACCATGGACAGGTGGAGGTGAACATTTCTCATTTTTTAACCAGCCTTCTGCAGCGGCAATCAACTTTAAAACATTCT
GTTCATCTCTTAGTCTGTTACTTTCACAAAGCAAACAAGATCAAGAAAAGTTAGATCAAATCGAAAAAGACTTTTTTGAA
TTAATGAATAAGGAATTGATGAAAATGTGGGCAAACAAGCTTGGTTTAGAACATTACAACGAAACTCTAATAAATGAATT
TTTTAATCTCATGGTCATTTCAAAAGCAGACTATACAATTTTGTTCCGTAAACTCTCTAAAATCCCTGATAACTTAGATT
CTTTAAAAGACTGTTTCTATTTACCAATTAATGACGAGCTCAATAATAGGTGGGAAGTATGGCTTGAAAACTGGCAATCA
GTCTTGAAGAAAGAGGGAAATATTAAAGCAAAATCGGCATCAATGAAATCCCTTAATCCAGTCTATACTTGGCGCGAATG
GATGGTCGTTCCCGCATATGAAGAAGCTGAAAAGGGAAATTACAAAAAAATAAAAGAGTTACAGGATGTCTTTAGCAATC
CATATGTAGAACAACCCCCAGAAATAGATCAAAAATATAATCGACTAAAGCCAAGCCAGTATTTTAACTATGGAGGAGTA
TCTCATTACAGTTGTTCTTCGTAA

Upstream 100 bases:

>100_bases
CGTATCGCCAAAAACCATCCCTAATAGAATCTATATAAGATACATTTAGGTATTTAATTTAAAGAAATTAGAGCGCCACA
AAGAATAGATAGCAAATTTG

Downstream 100 bases:

>100_bases
AAGGTGAATCCTAAAAATGCAGATTGAACAAATTACAGAAAAATATTATTTATTTATGGTCGTAGGCATTCCAACTACAG
ATACAACTCCCACATGAAGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 567; Mature: 566

Protein sequence:

>567_residues
MSTKSDSLKGKLTENFSEFSQLSDYSLMNSLKADPQSTKDGNDHKPRSVYSGHYVPVVPTPIPEPEYISHSNKLFKELRL
SSDLTKDENFCRFFSGDISVANYPMSPVGWATGYALSIYGTEYTQQCPFGTGNGYGDGRAISVFEGLFNGKRMEMQLKGG
GPTPYCRGADGRAVLRSSVREFLAQELMDALGIPTSRSLTLYVSRSEIVRRPWYSKGSRYFEPDVMIDNQAAITTRVAPS
FLRLGQIELFARRVRNNAHDEALNELKMIVQHLIDRNYKDEIEYEISIESKVIKLASLYRSRLISLIANWMRVGYCQGNF
NSDNCAAGGYTLDYGPFGFCELFDPRFQPWTGGGEHFSFFNQPSAAAINFKTFCSSLSLLLSQSKQDQEKLDQIEKDFFE
LMNKELMKMWANKLGLEHYNETLINEFFNLMVISKADYTILFRKLSKIPDNLDSLKDCFYLPINDELNNRWEVWLENWQS
VLKKEGNIKAKSASMKSLNPVYTWREWMVVPAYEEAEKGNYKKIKELQDVFSNPYVEQPPEIDQKYNRLKPSQYFNYGGV
SHYSCSS

Sequences:

>Translated_567_residues
MSTKSDSLKGKLTENFSEFSQLSDYSLMNSLKADPQSTKDGNDHKPRSVYSGHYVPVVPTPIPEPEYISHSNKLFKELRL
SSDLTKDENFCRFFSGDISVANYPMSPVGWATGYALSIYGTEYTQQCPFGTGNGYGDGRAISVFEGLFNGKRMEMQLKGG
GPTPYCRGADGRAVLRSSVREFLAQELMDALGIPTSRSLTLYVSRSEIVRRPWYSKGSRYFEPDVMIDNQAAITTRVAPS
FLRLGQIELFARRVRNNAHDEALNELKMIVQHLIDRNYKDEIEYEISIESKVIKLASLYRSRLISLIANWMRVGYCQGNF
NSDNCAAGGYTLDYGPFGFCELFDPRFQPWTGGGEHFSFFNQPSAAAINFKTFCSSLSLLLSQSKQDQEKLDQIEKDFFE
LMNKELMKMWANKLGLEHYNETLINEFFNLMVISKADYTILFRKLSKIPDNLDSLKDCFYLPINDELNNRWEVWLENWQS
VLKKEGNIKAKSASMKSLNPVYTWREWMVVPAYEEAEKGNYKKIKELQDVFSNPYVEQPPEIDQKYNRLKPSQYFNYGGV
SHYSCSS
>Mature_566_residues
STKSDSLKGKLTENFSEFSQLSDYSLMNSLKADPQSTKDGNDHKPRSVYSGHYVPVVPTPIPEPEYISHSNKLFKELRLS
SDLTKDENFCRFFSGDISVANYPMSPVGWATGYALSIYGTEYTQQCPFGTGNGYGDGRAISVFEGLFNGKRMEMQLKGGG
PTPYCRGADGRAVLRSSVREFLAQELMDALGIPTSRSLTLYVSRSEIVRRPWYSKGSRYFEPDVMIDNQAAITTRVAPSF
LRLGQIELFARRVRNNAHDEALNELKMIVQHLIDRNYKDEIEYEISIESKVIKLASLYRSRLISLIANWMRVGYCQGNFN
SDNCAAGGYTLDYGPFGFCELFDPRFQPWTGGGEHFSFFNQPSAAAINFKTFCSSLSLLLSQSKQDQEKLDQIEKDFFEL
MNKELMKMWANKLGLEHYNETLINEFFNLMVISKADYTILFRKLSKIPDNLDSLKDCFYLPINDELNNRWEVWLENWQSV
LKKEGNIKAKSASMKSLNPVYTWREWMVVPAYEEAEKGNYKKIKELQDVFSNPYVEQPPEIDQKYNRLKPSQYFNYGGVS
HYSCSS

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family [H]

Homologues:

Organism=Homo sapiens, GI32880229, Length=428, Percent_Identity=29.2056074766355, Blast_Score=158, Evalue=1e-38,
Organism=Escherichia coli, GI1787999, Length=507, Percent_Identity=31.5581854043393, Blast_Score=203, Evalue=2e-53,
Organism=Saccharomyces cerevisiae, GI6325034, Length=424, Percent_Identity=28.7735849056604, Blast_Score=141, Evalue=3e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003846 [H]

Pfam domain/function: PF02696 UPF0061 [H]

EC number: NA

Molecular weight: Translated: 64967; Mature: 64836

Theoretical pI: Translated: 6.71; Mature: 6.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTKSDSLKGKLTENFSEFSQLSDYSLMNSLKADPQSTKDGNDHKPRSVYSGHYVPVVPT
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCC
PIPEPEYISHSNKLFKELRLSSDLTKDENFCRFFSGDISVANYPMSPVGWATGYALSIYG
CCCCCHHHCHHHHHHHHHHHHCCCCCCCCHHHHCCCCCEEECCCCCCCCCCCCCEEEEEC
TEYTQQCPFGTGNGYGDGRAISVFEGLFNGKRMEMQLKGGGPTPYCRGADGRAVLRSSVR
CCHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHH
EFLAQELMDALGIPTSRSLTLYVSRSEIVRRPWYSKGSRYFEPDVMIDNQAAITTRVAPS
HHHHHHHHHHHCCCCCCCEEEEEEHHHHHHCCCCCCCCCEECCCEEECCCCHHHHHHCHH
FLRLGQIELFARRVRNNAHDEALNELKMIVQHLIDRNYKDEIEYEISIESKVIKLASLYR
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHH
SRLISLIANWMRVGYCQGNFNSDNCAAGGYTLDYGPFGFCELFDPRFQPWTGGGEHFSFF
HHHHHHHHHHHHHEEECCCCCCCCCCCCCEEECCCCCCHHHHCCCCCCCCCCCCCCCCCC
NQPSAAAINFKTFCSSLSLLLSQSKQDQEKLDQIEKDFFELMNKELMKMWANKLGLEHYN
CCCCCCEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
ETLINEFFNLMVISKADYTILFRKLSKIPDNLDSLKDCFYLPINDELNNRWEVWLENWQS
HHHHHHHHHEEEECCCCHHHHHHHHHHCCCCHHHHHHEEEECCCCCCCCHHHHHHHHHHH
VLKKEGNIKAKSASMKSLNPVYTWREWMVVPAYEEAEKGNYKKIKELQDVFSNPYVEQPP
HHHCCCCCEECCCCHHCCCCCEEEEHEEEECCHHHHCCCCHHHHHHHHHHHCCCCCCCCC
EIDQKYNRLKPSQYFNYGGVSHYSCSS
CHHHHHHHCCCHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
STKSDSLKGKLTENFSEFSQLSDYSLMNSLKADPQSTKDGNDHKPRSVYSGHYVPVVPT
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCC
PIPEPEYISHSNKLFKELRLSSDLTKDENFCRFFSGDISVANYPMSPVGWATGYALSIYG
CCCCCHHHCHHHHHHHHHHHHCCCCCCCCHHHHCCCCCEEECCCCCCCCCCCCCEEEEEC
TEYTQQCPFGTGNGYGDGRAISVFEGLFNGKRMEMQLKGGGPTPYCRGADGRAVLRSSVR
CCHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHH
EFLAQELMDALGIPTSRSLTLYVSRSEIVRRPWYSKGSRYFEPDVMIDNQAAITTRVAPS
HHHHHHHHHHHCCCCCCCEEEEEEHHHHHHCCCCCCCCCEECCCEEECCCCHHHHHHCHH
FLRLGQIELFARRVRNNAHDEALNELKMIVQHLIDRNYKDEIEYEISIESKVIKLASLYR
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHH
SRLISLIANWMRVGYCQGNFNSDNCAAGGYTLDYGPFGFCELFDPRFQPWTGGGEHFSFF
HHHHHHHHHHHHHEEECCCCCCCCCCCCCEEECCCCCCHHHHCCCCCCCCCCCCCCCCCC
NQPSAAAINFKTFCSSLSLLLSQSKQDQEKLDQIEKDFFELMNKELMKMWANKLGLEHYN
CCCCCCEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
ETLINEFFNLMVISKADYTILFRKLSKIPDNLDSLKDCFYLPINDELNNRWEVWLENWQS
HHHHHHHHHEEEECCCCHHHHHHHHHHCCCCHHHHHHEEEECCCCCCCCHHHHHHHHHHH
VLKKEGNIKAKSASMKSLNPVYTWREWMVVPAYEEAEKGNYKKIKELQDVFSNPYVEQPP
HHHCCCCCEECCCCHHCCCCCEEEEHEEEECCHHHHCCCCHHHHHHHHHHHCCCCCCCCC
EIDQKYNRLKPSQYFNYGGVSHYSCSS
CHHHHHHHCCCHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA