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The map label for this gene is 78779534

Identifier: 78779534

GI number: 78779534

Start: 1067348

End: 1068796

Strand: Direct

Name: 78779534

Synonym: PMT9312_1151

Alternate gene names: NA

Gene position: 1067348-1068796 (Clockwise)

Preceding gene: 78779533

Following gene: 78779535

Centisome position: 62.45

GC content: 32.09

Gene sequence:

>1449_bases
ATGTCAGAACAAGATGCGGACCAAAGTAATTCTTTGAATAATCAATGGAAAAAAAGATTACAAGAGATAGGGCAGGGGGC
TTTTGAATTTGAAGAAATGCTCCGTTTAGGCTTCATTGATTTGGATACTATTAAGCGTTTCGATAAAGAAATGACTATTG
AGGAATCTAAAGAAGTTTTTGAACAGTTAACTAAAACCAGTGCAATATTAAGTGAAGTTGATAAAGAAATAAATTCCATT
AATCGTATAGAGGAACTTCTCGCAGAAATAAGATCTCGAAGAATAAAAAGAGTTAAGGAGGCTGCTAAAGAAAAGAAAAT
TAAGAAGCAAGAGGAAAAGATTAAACGGTCGAAAGAAATTAAAGAACGAAAAATTAATTCCCCAACATTTTTGGGGAGAG
GGGTTTCAAATAGACTTAGTTTTGAAAAAGTTAAAAAGGTAGATTTTAAATCCAATAAAATTCCTGAACTTAATTCTTTT
GTTGATGTAGCTAATGCTTTAGAGGTAACTCCATCCAAATTGCAATGGCTTATTTATGAAAGAGGTGCAAGTAATATTGA
TCATTATTTAAGATATGAGATACCAAAAAAATCAGGAGGTAAGAGATTAATTTCCAGTCCAAAGAAAGATATGAAAAAAG
CTCAGAAATGGATCTTGGAAAATATTTTAATTAACCTTGATGTTGATAAAGCGGCTATGGCTTTTCAAAAAGGTTTATCA
ATTATTGATAATGCATCCTTACATGTCAAATCAAAAATTATAGTCCGTATAGATATAAAAGACTTTTTCCCTACTATCAC
TTTTCCCCGTGTAAGAGGTTTTTTCGAATCTTTAGGTTATAACCCTGGTGTTGCAACTGTCTTTGCATTGATTTGTACGG
ATAGTCCTAAAGTAATACTTAAGCAGGAAGCGATAGATGGAGACAAAAACAATAAAGATTATCCTCATTTTATAGCTATT
AGTGAGAGGTCACTGCCTCAAGGTGCGTGTACTTCACCATCATTAGCTAATCTTATTTGCAGAAAAATTGACTCACGTCT
TAATGGATATTCTTCAAAATCTGGATGGAAATATTCTAGATATGCAGATGATTTAATTTTTTCTACTACCTCTGAAGACA
GCTATCCTCATAGATTAATAAAATCAATTTCATCGATAATATCTGAAGAAGGTTTTAAGGTAAATCAATCAAAAACAAGA
TTGATGCGCGCACCTAATCGACAAACTGTTACTGGTTTAGTTGTTAATAATGAAGTAACTCTTAGCAGAAGAGATTTAAA
ACGAATGCGTGCATTTTTTCATCAATGTTCTTCTAAAGGTTTAGATTTCATGAGTGAGAAAATTGGTAAAGATGCATTAT
CTGTAGCGCGTGGATATATCTCATATGTCGAAATGGTTTCACCTACAATTGCAGAAAAATTTCTTTCAACCAATTCCTGG
ATAAAATAA

Upstream 100 bases:

>100_bases
ATTAATGCGCAATGCGACTGTTCTCATTTTCGATTTCATAAACTTAGACAAGGACCTTGTAGACATATTGTTTGCTTAAG
CTTGAAGGGAGGTGGATAAG

Downstream 100 bases:

>100_bases
TTCAAAATAAATGTCTAAAAAATTCCCAATATTATTTCCCGAATTGCTTGCTGATTTTGAATTAATTAAAGGTTCAAGTG
ATGATCCTGATGAAACTGAT

Product: retron-type reverse transcriptase

Products: NA

Alternate protein names: Mx162-RT; Reverse transcriptase [H]

Number of amino acids: Translated: 482; Mature: 481

Protein sequence:

>482_residues
MSEQDADQSNSLNNQWKKRLQEIGQGAFEFEEMLRLGFIDLDTIKRFDKEMTIEESKEVFEQLTKTSAILSEVDKEINSI
NRIEELLAEIRSRRIKRVKEAAKEKKIKKQEEKIKRSKEIKERKINSPTFLGRGVSNRLSFEKVKKVDFKSNKIPELNSF
VDVANALEVTPSKLQWLIYERGASNIDHYLRYEIPKKSGGKRLISSPKKDMKKAQKWILENILINLDVDKAAMAFQKGLS
IIDNASLHVKSKIIVRIDIKDFFPTITFPRVRGFFESLGYNPGVATVFALICTDSPKVILKQEAIDGDKNNKDYPHFIAI
SERSLPQGACTSPSLANLICRKIDSRLNGYSSKSGWKYSRYADDLIFSTTSEDSYPHRLIKSISSIISEEGFKVNQSKTR
LMRAPNRQTVTGLVVNNEVTLSRRDLKRMRAFFHQCSSKGLDFMSEKIGKDALSVARGYISYVEMVSPTIAEKFLSTNSW
IK

Sequences:

>Translated_482_residues
MSEQDADQSNSLNNQWKKRLQEIGQGAFEFEEMLRLGFIDLDTIKRFDKEMTIEESKEVFEQLTKTSAILSEVDKEINSI
NRIEELLAEIRSRRIKRVKEAAKEKKIKKQEEKIKRSKEIKERKINSPTFLGRGVSNRLSFEKVKKVDFKSNKIPELNSF
VDVANALEVTPSKLQWLIYERGASNIDHYLRYEIPKKSGGKRLISSPKKDMKKAQKWILENILINLDVDKAAMAFQKGLS
IIDNASLHVKSKIIVRIDIKDFFPTITFPRVRGFFESLGYNPGVATVFALICTDSPKVILKQEAIDGDKNNKDYPHFIAI
SERSLPQGACTSPSLANLICRKIDSRLNGYSSKSGWKYSRYADDLIFSTTSEDSYPHRLIKSISSIISEEGFKVNQSKTR
LMRAPNRQTVTGLVVNNEVTLSRRDLKRMRAFFHQCSSKGLDFMSEKIGKDALSVARGYISYVEMVSPTIAEKFLSTNSW
IK
>Mature_481_residues
SEQDADQSNSLNNQWKKRLQEIGQGAFEFEEMLRLGFIDLDTIKRFDKEMTIEESKEVFEQLTKTSAILSEVDKEINSIN
RIEELLAEIRSRRIKRVKEAAKEKKIKKQEEKIKRSKEIKERKINSPTFLGRGVSNRLSFEKVKKVDFKSNKIPELNSFV
DVANALEVTPSKLQWLIYERGASNIDHYLRYEIPKKSGGKRLISSPKKDMKKAQKWILENILINLDVDKAAMAFQKGLSI
IDNASLHVKSKIIVRIDIKDFFPTITFPRVRGFFESLGYNPGVATVFALICTDSPKVILKQEAIDGDKNNKDYPHFIAIS
ERSLPQGACTSPSLANLICRKIDSRLNGYSSKSGWKYSRYADDLIFSTTSEDSYPHRLIKSISSIISEEGFKVNQSKTRL
MRAPNRQTVTGLVVNNEVTLSRRDLKRMRAFFHQCSSKGLDFMSEKIGKDALSVARGYISYVEMVSPTIAEKFLSTNSWI
K

Specific function: Participates in the synthesis of a msDNA (a branched RNA linked by a 2',5'-phosphodiester linkage to a single-stranded DNA) of unknown function. The retron transcript serves as primer and template to the reaction, and codes for the RT [H]

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000123
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: =2.7.7.49 [H]

Molecular weight: Translated: 55151; Mature: 55020

Theoretical pI: Translated: 10.20; Mature: 10.20

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEQDADQSNSLNNQWKKRLQEIGQGAFEFEEMLRLGFIDLDTIKRFDKEMTIEESKEVF
CCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHH
EQLTKTSAILSEVDKEINSINRIEELLAEIRSRRIKRVKEAAKEKKIKKQEEKIKRSKEI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KERKINSPTFLGRGVSNRLSFEKVKKVDFKSNKIPELNSFVDVANALEVTPSKLQWLIYE
HHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHH
RGASNIDHYLRYEIPKKSGGKRLISSPKKDMKKAQKWILENILINLDVDKAAMAFQKGLS
CCCCCHHHHHEEECCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCH
IIDNASLHVKSKIIVRIDIKDFFPTITFPRVRGFFESLGYNPGVATVFALICTDSPKVIL
HHCCCCEEEEEEEEEEEEHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHCCCCCEEE
KQEAIDGDKNNKDYPHFIAISERSLPQGACTSPSLANLICRKIDSRLNGYSSKSGWKYSR
EHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHH
YADDLIFSTTSEDSYPHRLIKSISSIISEEGFKVNQSKTRLMRAPNRQTVTGLVVNNEVT
HHHHHHEECCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEEEECCCEE
LSRRDLKRMRAFFHQCSSKGLDFMSEKIGKDALSVARGYISYVEMVSPTIAEKFLSTNSW
ECHHHHHHHHHHHHHHHHCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
IK
CC
>Mature Secondary Structure 
SEQDADQSNSLNNQWKKRLQEIGQGAFEFEEMLRLGFIDLDTIKRFDKEMTIEESKEVF
CCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHH
EQLTKTSAILSEVDKEINSINRIEELLAEIRSRRIKRVKEAAKEKKIKKQEEKIKRSKEI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KERKINSPTFLGRGVSNRLSFEKVKKVDFKSNKIPELNSFVDVANALEVTPSKLQWLIYE
HHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHH
RGASNIDHYLRYEIPKKSGGKRLISSPKKDMKKAQKWILENILINLDVDKAAMAFQKGLS
CCCCCHHHHHEEECCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCH
IIDNASLHVKSKIIVRIDIKDFFPTITFPRVRGFFESLGYNPGVATVFALICTDSPKVIL
HHCCCCEEEEEEEEEEEEHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHCCCCCEEE
KQEAIDGDKNNKDYPHFIAISERSLPQGACTSPSLANLICRKIDSRLNGYSSKSGWKYSR
EHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHH
YADDLIFSTTSEDSYPHRLIKSISSIISEEGFKVNQSKTRLMRAPNRQTVTGLVVNNEVT
HHHHHHEECCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEEEECCCEE
LSRRDLKRMRAFFHQCSSKGLDFMSEKIGKDALSVARGYISYVEMVSPTIAEKFLSTNSW
ECHHHHHHHHHHHHHHHHCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
IK
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2465092; 2465091 [H]